Wall clock time and date at job start Tue Mar 31 2020 00:17:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.46958 * 2 1 4 4 C 1.50696 * 109.47687 * 240.00002 * 2 1 3 5 5 O 1.21280 * 120.00300 * 240.00549 * 4 2 1 6 6 N 1.34777 * 120.00089 * 59.99740 * 4 2 1 7 7 C 1.46498 * 120.00139 * 180.02562 * 6 4 2 8 8 H 1.08992 * 115.51775 * 9.41026 * 7 6 4 9 9 C 1.53008 * 117.43993 * 224.00240 * 7 6 4 10 10 H 1.09003 * 119.53519 * 4.11221 * 9 7 6 11 11 C 1.54436 * 118.09216 * 160.74092 * 9 7 6 12 12 N 1.48142 * 104.55635 * 87.29205 * 11 9 7 13 13 C 1.36936 * 127.83651 * 140.40385 * 12 11 9 14 14 H 1.07999 * 120.00379 * 195.61203 * 13 12 11 15 15 C 1.38814 * 120.00258 * 15.61544 * 13 12 11 16 16 N 1.31627 * 119.99780 * 9.10788 * 15 13 12 17 17 Si 1.86795 * 120.00435 * 189.11363 * 15 13 12 18 18 H 1.48500 * 109.46951 * 359.97438 * 17 15 13 19 19 H 1.48498 * 109.47378 * 119.99609 * 17 15 13 20 20 H 1.48504 * 109.47103 * 239.99663 * 17 15 13 21 21 C 1.48140 * 104.32751 * 320.40194 * 12 11 9 22 22 C 1.53001 * 117.44356 * 154.83623 * 7 6 4 23 23 H 1.09000 * 119.53749 * 354.27724 * 22 7 6 24 24 C 1.53002 * 109.46865 * 119.99659 * 2 1 3 25 25 C 1.53000 * 117.51836 * 231.28289 * 24 2 1 26 26 C 1.53002 * 117.50165 * 299.91511 * 24 2 1 27 27 H 1.08992 * 109.47632 * 299.99783 * 1 2 3 28 28 H 1.09004 * 109.46897 * 60.00657 * 1 2 3 29 29 H 1.08999 * 109.46847 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.47458 * 179.97438 * 3 2 1 31 31 H 1.08996 * 109.47526 * 299.99715 * 3 2 1 32 32 H 1.09006 * 109.47105 * 60.00148 * 3 2 1 33 33 H 0.97000 * 119.99841 * 0.02562 * 6 4 2 34 34 H 1.09003 * 110.44539 * 328.52347 * 11 9 7 35 35 H 1.08999 * 110.52565 * 206.10333 * 11 9 7 36 36 H 0.97000 * 119.99793 * 180.02562 * 16 15 13 37 37 H 1.09010 * 110.40514 * 280.80206 * 21 12 11 38 38 H 1.08998 * 110.40996 * 158.37257 * 21 12 11 39 39 H 1.08999 * 115.54898 * 85.58625 * 24 2 1 40 40 H 1.08996 * 117.50138 * 214.96929 * 25 24 2 41 41 H 1.08997 * 117.50121 * 0.02562 * 25 24 2 42 42 H 1.08997 * 117.49573 * 359.97438 * 26 24 2 43 43 H 1.08998 * 117.49427 * 144.97090 * 26 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0325 -0.7104 -1.2304 5 8 2.7297 -1.6965 -1.1191 6 7 1.7069 -0.2500 -2.4545 7 6 2.1949 -0.9409 -3.6507 8 1 2.6772 -1.9021 -3.4737 9 6 2.7399 -0.0777 -4.7905 10 1 2.8134 1.0019 -4.6591 11 6 3.6549 -0.7493 -5.8378 12 7 2.7226 -1.2946 -6.8516 13 6 2.8744 -1.3059 -8.2125 14 1 2.0241 -1.5009 -8.8492 15 6 4.1212 -1.0666 -8.7739 16 7 5.1884 -1.0072 -8.0056 17 14 4.2847 -0.8289 -10.6194 18 1 2.9467 -0.9422 -11.2535 19 1 4.8523 0.5150 -10.8971 20 1 5.1851 -1.8710 -11.1749 21 6 1.5888 -1.8251 -6.0594 22 6 1.3791 -0.7872 -4.9359 23 1 0.4262 -0.2587 -4.9076 24 6 2.0399 -0.7212 1.2493 25 6 3.0757 0.0039 2.1109 26 6 1.6373 -0.1483 2.6097 27 1 -0.3634 0.5137 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 3.1300 1.4426 0.0005 31 1 1.6767 1.9563 -0.8900 32 1 1.6766 1.9563 0.8900 33 1 1.1495 0.5389 -2.5436 34 1 4.2313 -1.5532 -5.3801 35 1 4.3212 -0.0148 -6.2901 36 1 6.0596 -0.8396 -8.3978 37 1 1.8426 -2.7972 -5.6363 38 1 0.6949 -1.9008 -6.6785 39 1 2.1253 -1.8046 1.1648 40 1 3.8424 -0.6024 2.5932 41 1 3.3938 0.9952 1.7880 42 1 1.0095 0.7427 2.6146 43 1 1.4573 -0.8548 3.4199 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000961526829.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:17:21 Heat of formation + Delta-G solvation = 23.086764 kcal Electronic energy + Delta-G solvation = -21834.427423 eV Core-core repulsion = 18688.217382 eV Total energy + Delta-G solvation = -3146.210041 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.57482 -40.25549 -38.48515 -36.11959 -34.76832 -33.56681 -31.85641 -28.94879 -28.36359 -27.65745 -25.55831 -23.90464 -23.06124 -22.26803 -21.95074 -20.91218 -19.66158 -18.88226 -18.14780 -17.66012 -16.83861 -16.56921 -16.04154 -15.58866 -15.51768 -15.11495 -14.85126 -14.65797 -13.84577 -13.80283 -13.65980 -13.36535 -13.22333 -13.13137 -13.01756 -12.88457 -12.75389 -12.44979 -12.12909 -12.01303 -11.97619 -11.89478 -11.72776 -11.66678 -11.25850 -10.95500 -10.86065 -10.77706 -10.59714 -9.70813 -8.94483 -7.93019 -5.30603 1.46475 1.47269 1.55264 1.58696 1.94075 2.47630 2.83511 2.94846 3.27359 3.52142 3.59713 3.65033 3.82782 3.91137 3.97873 4.08890 4.11975 4.15870 4.33299 4.36516 4.48023 4.51274 4.73041 4.76341 4.82707 4.87230 4.88899 4.96104 4.97038 4.98689 5.06654 5.24900 5.26451 5.30736 5.34181 5.38792 5.40817 5.44433 5.54124 5.62323 6.14637 6.53327 6.98133 7.23785 7.65457 8.43935 9.21086 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.043669 B = 0.003248 C = 0.003173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 641.037030 B = 8619.509397 C = 8823.266965 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.040 4.040 3 C -0.144 4.144 4 C 0.521 3.479 5 O -0.585 6.585 6 N -0.680 5.680 7 C 0.114 3.886 8 H 0.099 0.901 9 C -0.183 4.183 10 H 0.123 0.877 11 C 0.189 3.811 12 N -0.617 5.617 13 C -0.241 4.241 14 H 0.085 0.915 15 C -0.065 4.065 16 N -0.950 5.950 17 Si 0.984 3.016 18 H -0.262 1.262 19 H -0.289 1.289 20 H -0.293 1.293 21 C 0.147 3.853 22 C -0.157 4.157 23 H 0.143 0.857 24 C -0.155 4.155 25 C -0.190 4.190 26 C -0.151 4.151 27 H 0.092 0.908 28 H 0.076 0.924 29 H 0.050 0.950 30 H 0.052 0.948 31 H 0.075 0.925 32 H 0.094 0.906 33 H 0.417 0.583 34 H -0.009 1.009 35 H 0.058 0.942 36 H 0.250 0.750 37 H 0.017 0.983 38 H 0.068 0.932 39 H 0.083 0.917 40 H 0.085 0.915 41 H 0.109 0.891 42 H 0.117 0.883 43 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.254 7.907 19.870 24.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.043 4.043 3 C -0.202 4.202 4 C 0.309 3.691 5 O -0.464 6.464 6 N -0.330 5.330 7 C 0.006 3.994 8 H 0.117 0.883 9 C -0.205 4.205 10 H 0.141 0.859 11 C 0.063 3.937 12 N -0.341 5.341 13 C -0.369 4.369 14 H 0.103 0.897 15 C -0.258 4.258 16 N -0.597 5.597 17 Si 0.811 3.189 18 H -0.186 1.186 19 H -0.216 1.216 20 H -0.220 1.220 21 C 0.021 3.979 22 C -0.178 4.178 23 H 0.161 0.839 24 C -0.173 4.173 25 C -0.227 4.227 26 C -0.188 4.188 27 H 0.111 0.889 28 H 0.094 0.906 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.094 0.906 32 H 0.113 0.887 33 H 0.254 0.746 34 H 0.009 0.991 35 H 0.076 0.924 36 H 0.059 0.941 37 H 0.034 0.966 38 H 0.086 0.914 39 H 0.102 0.898 40 H 0.104 0.896 41 H 0.127 0.873 42 H 0.135 0.865 43 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -11.629 7.220 19.743 24.024 hybrid contribution 0.720 -0.156 -1.226 1.431 sum -10.909 7.064 18.517 22.623 Atomic orbital electron populations 1.21876 0.90131 1.02794 1.04515 1.20254 0.98402 0.96254 0.89380 1.22048 1.01308 0.92206 1.04595 1.21309 0.78790 0.83767 0.85234 1.90678 1.39761 1.28760 1.87244 1.45183 1.52673 1.31568 1.03589 1.21352 1.00583 0.96653 0.80764 0.88292 1.24378 0.97698 0.99237 0.99140 0.85903 1.20765 0.91105 0.94781 0.87023 1.45492 1.19852 1.67026 1.01711 1.19463 0.94131 1.42273 0.81053 0.89695 1.25813 0.94799 1.02485 1.02749 1.70126 0.98209 1.55898 1.35501 0.84943 0.77970 0.76836 0.79124 1.18596 1.21612 1.22045 1.21288 0.91559 0.93576 0.91457 1.24177 0.96260 1.02307 0.95061 0.83911 1.21981 1.05796 0.98509 0.91056 1.23223 0.93192 1.02569 1.03681 1.23069 0.97207 1.03440 0.95074 0.88902 0.90551 0.93048 0.92856 0.90590 0.88742 0.74554 0.99126 0.92383 0.94128 0.96566 0.91381 0.89825 0.89613 0.87254 0.86506 0.88189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.72 8.21 71.98 0.59 -1.12 16 2 C -0.04 -0.72 0.72 -52.93 -0.04 -0.76 16 3 C -0.14 -1.94 6.97 71.98 0.50 -1.43 16 4 C 0.52 14.47 6.48 87.66 0.57 15.04 16 5 O -0.59 -22.50 15.21 -3.03 -0.05 -22.55 16 6 N -0.68 -17.15 5.35 -442.53 -2.37 -19.52 16 7 C 0.11 3.84 5.98 45.00 0.27 4.11 16 8 H 0.10 4.06 7.40 -2.39 -0.02 4.05 16 9 C -0.18 -6.95 7.05 -9.91 -0.07 -7.02 16 10 H 0.12 4.14 8.14 -2.39 -0.02 4.12 16 11 C 0.19 9.69 5.71 86.55 0.49 10.18 16 12 N -0.62 -32.51 3.38 -688.07 -2.32 -34.83 16 13 C -0.24 -13.61 10.35 84.03 0.87 -12.74 16 14 H 0.09 4.55 7.84 -2.91 -0.02 4.52 16 15 C -0.07 -3.73 5.40 84.86 0.46 -3.27 16 16 N -0.95 -58.27 10.86 21.65 0.24 -58.04 16 17 Si 0.98 45.75 29.56 68.60 2.03 47.78 16 18 H -0.26 -11.33 7.11 99.48 0.71 -10.63 16 19 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 20 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 21 C 0.15 6.17 7.04 86.53 0.61 6.78 16 22 C -0.16 -5.26 7.05 -9.93 -0.07 -5.33 16 23 H 0.14 3.73 8.14 -2.39 -0.02 3.71 16 24 C -0.15 -3.08 4.75 -10.79 -0.05 -3.13 16 25 C -0.19 -3.21 9.57 30.60 0.29 -2.92 16 26 C -0.15 -1.95 9.38 30.60 0.29 -1.66 16 27 H 0.09 0.75 7.29 -2.39 -0.02 0.74 16 28 H 0.08 0.74 7.57 -2.38 -0.02 0.72 16 29 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 30 H 0.05 0.89 6.97 -2.39 -0.02 0.87 16 31 H 0.08 0.82 7.56 -2.39 -0.02 0.80 16 32 H 0.09 0.81 7.07 -2.38 -0.02 0.79 16 33 H 0.42 7.33 7.66 -92.71 -0.71 6.62 16 34 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 35 H 0.06 3.32 6.51 -2.39 -0.02 3.30 16 36 H 0.25 14.79 8.31 -92.71 -0.77 14.02 16 37 H 0.02 0.72 8.14 -2.38 -0.02 0.70 16 38 H 0.07 2.62 8.14 -2.39 -0.02 2.60 16 39 H 0.08 2.19 7.47 -2.39 -0.02 2.18 16 40 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 41 H 0.11 1.62 5.85 -2.39 -0.01 1.61 16 42 H 0.12 0.99 7.07 -2.39 -0.02 0.97 16 43 H 0.10 1.17 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -74.02 340.08 2.53 -71.49 By element: Atomic # 1 Polarization: 18.67 SS G_CDS: 0.29 Total: 18.96 kcal Atomic # 6 Polarization: -8.00 SS G_CDS: 4.71 Total: -3.29 kcal Atomic # 7 Polarization: -107.93 SS G_CDS: -4.46 Total: -112.39 kcal Atomic # 8 Polarization: -22.50 SS G_CDS: -0.05 Total: -22.55 kcal Atomic # 14 Polarization: 45.75 SS G_CDS: 2.03 Total: 47.78 kcal Total: -74.02 2.53 -71.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000961526829.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.572 kcal (2) G-P(sol) polarization free energy of solvation -74.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.485 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds