Wall clock time and date at job start Tue Mar 31 2020 00:08:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.47093 * 120.00305 * 2 1 4 4 O 1.21617 * 120.00225 * 82.18818 * 3 2 1 5 5 N 1.34781 * 120.00087 * 262.18813 * 3 2 1 6 6 C 1.47026 * 125.64771 * 355.30538 * 5 3 2 7 7 C 1.54324 * 107.40198 * 181.10593 * 6 5 3 8 8 C 1.55156 * 102.94161 * 22.11488 * 7 6 5 9 9 H 1.08991 * 111.00563 * 82.61541 * 8 7 6 10 10 N 1.46506 * 110.99890 * 206.42786 * 8 7 6 11 11 C 1.36940 * 119.99539 * 273.54537 * 10 8 7 12 12 H 1.07994 * 120.00173 * 359.97438 * 11 10 8 13 13 C 1.38813 * 119.99409 * 180.02562 * 11 10 8 14 14 N 1.31611 * 120.00454 * 359.97438 * 13 11 10 15 15 Si 1.86807 * 119.99705 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.46971 * 59.99602 * 15 13 11 17 17 H 1.48492 * 109.46976 * 179.97438 * 15 13 11 18 18 H 1.48506 * 109.46816 * 299.99876 * 15 13 11 19 19 C 1.47744 * 125.82462 * 175.21685 * 5 3 2 20 20 C 1.32996 * 119.99505 * 179.97438 * 2 1 3 21 21 C 1.51448 * 126.33842 * 179.68530 * 20 2 1 22 22 C 1.54280 * 106.85126 * 180.24305 * 21 20 2 23 23 C 1.54983 * 103.65788 * 23.48568 * 22 21 20 24 24 C 1.51836 * 126.34427 * 0.02562 * 20 2 1 25 25 H 1.08998 * 109.47162 * 95.21322 * 1 2 3 26 26 H 1.08997 * 109.47238 * 215.21846 * 1 2 3 27 27 H 1.09002 * 109.46979 * 335.21775 * 1 2 3 28 28 H 1.08997 * 109.88437 * 61.60404 * 6 5 3 29 29 H 1.09001 * 109.88192 * 300.59750 * 6 5 3 30 30 H 1.08998 * 110.71679 * 140.47858 * 7 6 5 31 31 H 1.09001 * 110.71660 * 263.57549 * 7 6 5 32 32 H 0.97001 * 120.00008 * 93.54777 * 10 8 7 33 33 H 0.97001 * 120.00279 * 180.02562 * 14 13 11 34 34 H 1.08999 * 110.29267 * 37.01969 * 19 5 3 35 35 H 1.09005 * 110.52520 * 274.75282 * 19 5 3 36 36 H 1.09000 * 109.98580 * 299.72921 * 21 20 2 37 37 H 1.08998 * 109.98365 * 61.03511 * 21 20 2 38 38 H 1.08999 * 110.79508 * 264.86354 * 22 21 20 39 39 H 1.09001 * 110.55560 * 141.99590 * 22 21 20 40 40 H 1.09005 * 110.83291 * 204.48760 * 23 22 21 41 41 H 1.09000 * 110.83349 * 80.91274 * 23 22 21 42 42 H 1.09005 * 110.43998 * 274.92135 * 24 20 2 43 43 H 1.08998 * 110.44618 * 37.44683 * 24 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2425 1.2738 0.0000 4 8 2.4227 1.8720 1.0434 5 7 2.7169 1.7781 -1.1564 6 6 2.6568 1.1168 -2.4681 7 6 3.3440 2.0498 -3.4874 8 6 4.2533 2.9326 -2.5923 9 1 5.1903 2.4242 -2.3654 10 7 4.5030 4.2333 -3.2187 11 6 5.5363 4.3789 -4.1054 12 1 6.1673 3.5352 -4.3426 13 6 5.7733 5.6114 -4.6986 14 7 5.0046 6.6397 -4.4091 15 14 7.1833 5.8103 -5.9077 16 1 6.9831 4.8915 -7.0570 17 1 7.2224 7.2121 -6.3961 18 1 8.4648 5.4853 -5.2314 19 6 3.3823 3.0870 -1.3206 20 6 2.1719 -1.1518 0.0005 21 6 3.6771 -1.3192 -0.0061 22 6 3.9584 -2.8361 -0.0089 23 6 2.6645 -3.4472 -0.6041 24 6 1.5625 -2.5426 0.0006 25 1 -0.3633 -0.0934 -1.0234 26 1 -0.3633 -0.8395 0.5926 27 1 -0.3633 0.9330 0.4308 28 1 1.6177 0.9557 -2.7548 29 1 3.1819 0.1625 -2.4266 30 1 3.9410 1.4748 -4.1951 31 1 2.6068 2.6580 -4.0115 32 1 3.9365 4.9912 -3.0053 33 1 5.1700 7.5009 -4.8239 34 1 4.0090 3.3036 -0.4555 35 1 2.6436 3.8764 -1.4601 36 1 4.0992 -0.8583 -0.8991 37 1 4.1064 -0.8644 0.8866 38 1 4.1230 -3.2010 1.0050 39 1 4.8162 -3.0651 -0.6412 40 1 2.5391 -4.4804 -0.2802 41 1 2.6682 -3.3786 -1.6920 42 1 1.3291 -2.8558 1.0182 43 1 0.6673 -2.5660 -0.6207 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000968395178.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:08:29 Heat of formation + Delta-G solvation = -22.269576 kcal Electronic energy + Delta-G solvation = -21997.658416 eV Core-core repulsion = 18849.481577 eV Total energy + Delta-G solvation = -3148.176839 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.04886 -38.23816 -37.14815 -34.15194 -33.49751 -31.40394 -29.51882 -29.26873 -27.83457 -27.75136 -24.79456 -23.38951 -22.56244 -20.97067 -20.16509 -19.98525 -17.80707 -17.30978 -16.65620 -16.11336 -15.81329 -15.27005 -14.79120 -14.40950 -13.70522 -13.61746 -13.52063 -13.39190 -13.19430 -12.83697 -12.67072 -12.55847 -12.39841 -11.94176 -11.81204 -11.57516 -11.38341 -11.31343 -11.23558 -11.14954 -10.89118 -10.82209 -10.68659 -10.32074 -10.09539 -9.79100 -9.62902 -8.96674 -8.80143 -8.38832 -7.06061 -5.83180 -3.13918 1.68674 2.75426 3.23834 3.40746 3.45623 3.46508 4.19276 4.44899 4.53782 4.67653 4.77132 4.90376 5.07084 5.14618 5.15715 5.27115 5.34710 5.36409 5.46011 5.52110 5.55092 5.57655 5.61069 5.64510 5.70249 5.76574 5.78626 5.84133 5.89403 5.98514 6.05076 6.14954 6.22073 6.27424 6.37732 6.55684 6.58601 6.61684 6.90907 7.63800 7.74385 8.31515 8.34585 9.45745 9.99739 10.34843 11.39006 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.026179 B = 0.003799 C = 0.003539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.300809 B = 7367.937447 C = 7909.817762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 C -0.155 4.155 3 C 0.574 3.426 4 O -0.544 6.544 5 N -0.607 5.607 6 C 0.104 3.896 7 C -0.154 4.154 8 C 0.173 3.827 9 H 0.062 0.938 10 N -0.715 5.715 11 C -0.245 4.245 12 H 0.072 0.928 13 C -0.009 4.009 14 N -0.931 5.931 15 Si 0.909 3.091 16 H -0.285 1.285 17 H -0.291 1.291 18 H -0.285 1.285 19 C 0.098 3.902 20 C -0.087 4.087 21 C -0.104 4.104 22 C -0.122 4.122 23 C -0.123 4.123 24 C -0.091 4.091 25 H 0.071 0.929 26 H 0.069 0.931 27 H 0.066 0.934 28 H 0.060 0.940 29 H 0.061 0.939 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.386 0.614 33 H 0.257 0.743 34 H 0.076 0.924 35 H 0.070 0.930 36 H 0.079 0.921 37 H 0.076 0.924 38 H 0.067 0.933 39 H 0.069 0.931 40 H 0.070 0.930 41 H 0.071 0.929 42 H 0.081 0.919 43 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.984 -20.057 6.525 22.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.158 4.158 3 C 0.362 3.638 4 O -0.422 6.422 5 N -0.340 5.340 6 C -0.019 4.019 7 C -0.196 4.196 8 C 0.061 3.939 9 H 0.080 0.920 10 N -0.356 5.356 11 C -0.376 4.376 12 H 0.090 0.910 13 C -0.206 4.206 14 N -0.578 5.578 15 Si 0.740 3.260 16 H -0.212 1.212 17 H -0.216 1.216 18 H -0.212 1.212 19 C -0.025 4.025 20 C -0.088 4.088 21 C -0.141 4.141 22 C -0.160 4.160 23 C -0.160 4.160 24 C -0.128 4.128 25 H 0.089 0.911 26 H 0.088 0.912 27 H 0.085 0.915 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.092 0.908 31 H 0.095 0.905 32 H 0.221 0.779 33 H 0.067 0.933 34 H 0.095 0.905 35 H 0.088 0.912 36 H 0.098 0.902 37 H 0.094 0.906 38 H 0.086 0.914 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.089 0.911 42 H 0.099 0.901 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -7.746 -19.731 7.031 22.333 hybrid contribution 0.544 0.453 -0.712 1.004 sum -7.202 -19.278 6.319 21.528 Atomic orbital electron populations 1.20565 0.89659 1.03010 1.02203 1.20698 0.96487 0.91619 1.06984 1.18008 0.78451 0.84899 0.82394 1.90800 1.58954 1.61509 1.30974 1.48537 1.57902 1.19987 1.07606 1.22073 1.00456 0.96470 0.82895 1.23415 1.00201 0.98340 0.97618 1.21277 0.94711 0.88673 0.89270 0.91971 1.42251 1.36606 1.05912 1.50781 1.19160 1.06247 0.95284 1.16924 0.91044 1.24765 0.99355 0.95787 1.00659 1.69648 1.40356 1.00947 1.46845 0.86248 0.82010 0.76791 0.80988 1.21178 1.21639 1.21159 1.22604 0.96062 0.84050 0.99799 1.22406 0.95793 0.93576 0.96998 1.21309 0.92739 0.97084 1.02935 1.22346 0.97928 0.94455 1.01227 1.22506 0.94467 0.98547 1.00514 1.21436 0.98366 0.91505 1.01496 0.91069 0.91192 0.91509 0.92145 0.92029 0.90789 0.90530 0.77929 0.93285 0.90547 0.91218 0.90234 0.90576 0.91378 0.91180 0.91177 0.91055 0.90116 0.90697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.99 9.48 36.01 0.34 -0.65 16 2 C -0.15 -1.98 4.93 -102.85 -0.51 -2.49 16 3 C 0.57 9.51 6.58 -12.67 -0.08 9.43 16 4 O -0.54 -11.11 17.36 5.26 0.09 -11.02 16 5 N -0.61 -9.74 3.34 -171.65 -0.57 -10.32 16 6 C 0.10 1.44 6.46 -3.06 -0.02 1.42 16 7 C -0.15 -2.53 6.65 -24.90 -0.17 -2.69 16 8 C 0.17 3.35 3.69 -65.78 -0.24 3.11 16 9 H 0.06 1.23 8.13 -51.93 -0.42 0.81 16 10 N -0.72 -17.42 5.28 -51.35 -0.27 -17.69 16 11 C -0.25 -6.60 9.98 -15.06 -0.15 -6.75 16 12 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 13 C -0.01 -0.26 5.50 -17.43 -0.10 -0.35 16 14 N -0.93 -27.60 13.06 55.49 0.72 -26.87 16 15 Si 0.91 21.90 29.55 -169.99 -5.02 16.87 16 16 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 17 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 18 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 19 C 0.10 1.78 6.57 -2.35 -0.02 1.76 16 20 C -0.09 -0.95 6.12 -100.24 -0.61 -1.57 16 21 C -0.10 -1.13 5.90 -26.85 -0.16 -1.29 16 22 C -0.12 -1.01 6.88 -25.01 -0.17 -1.18 16 23 C -0.12 -0.89 6.94 -24.70 -0.17 -1.06 16 24 C -0.09 -0.73 5.72 -26.34 -0.15 -0.88 16 25 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.07 0.58 7.48 -51.93 -0.39 0.19 16 27 H 0.07 0.74 8.08 -51.93 -0.42 0.32 16 28 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 29 H 0.06 0.76 6.84 -51.93 -0.35 0.41 16 30 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.08 1.34 8.14 -51.93 -0.42 0.92 16 32 H 0.39 10.05 7.71 -40.82 -0.31 9.73 16 33 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 34 H 0.08 1.47 8.00 -51.93 -0.42 1.05 16 35 H 0.07 1.30 8.00 -51.93 -0.42 0.89 16 36 H 0.08 0.92 6.84 -51.93 -0.35 0.57 16 37 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 38 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 39 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 43 H 0.07 0.53 7.77 -51.93 -0.40 0.13 16 LS Contribution 347.70 15.07 5.24 5.24 Total: -1.00 -31.31 347.70 -9.28 -40.59 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: -7.26 Total: 6.40 kcal Atomic # 6 Polarization: -1.00 SS G_CDS: -2.20 Total: -3.20 kcal Atomic # 7 Polarization: -54.76 SS G_CDS: -0.12 Total: -54.88 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: 0.09 Total: -11.02 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -5.02 Total: 16.87 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -31.31 -9.28 -40.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968395178.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.322 kcal (2) G-P(sol) polarization free energy of solvation -31.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.990 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.592 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds