Wall clock time and date at job start Tue Mar 31 2020 00:08:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.47093 * 120.00305 * 2 1 4 4 O 1.21617 * 120.00225 * 82.18818 * 3 2 1 5 5 N 1.34781 * 120.00087 * 262.18813 * 3 2 1 6 6 C 1.47026 * 125.64771 * 355.30538 * 5 3 2 7 7 C 1.54324 * 107.40198 * 181.10593 * 6 5 3 8 8 C 1.55156 * 102.94161 * 22.11488 * 7 6 5 9 9 H 1.08991 * 111.00563 * 82.61541 * 8 7 6 10 10 N 1.46506 * 110.99890 * 206.42786 * 8 7 6 11 11 C 1.36940 * 119.99539 * 273.54537 * 10 8 7 12 12 H 1.07994 * 120.00173 * 359.97438 * 11 10 8 13 13 C 1.38813 * 119.99409 * 180.02562 * 11 10 8 14 14 N 1.31611 * 120.00454 * 359.97438 * 13 11 10 15 15 Si 1.86807 * 119.99705 * 179.97438 * 13 11 10 16 16 H 1.48501 * 109.46971 * 59.99602 * 15 13 11 17 17 H 1.48492 * 109.46976 * 179.97438 * 15 13 11 18 18 H 1.48506 * 109.46816 * 299.99876 * 15 13 11 19 19 C 1.47744 * 125.82462 * 175.21685 * 5 3 2 20 20 C 1.32996 * 119.99505 * 179.97438 * 2 1 3 21 21 C 1.51448 * 126.33842 * 179.68530 * 20 2 1 22 22 C 1.54280 * 106.85126 * 180.24305 * 21 20 2 23 23 C 1.54983 * 103.65788 * 23.48568 * 22 21 20 24 24 C 1.51836 * 126.34427 * 0.02562 * 20 2 1 25 25 H 1.08998 * 109.47162 * 95.21322 * 1 2 3 26 26 H 1.08997 * 109.47238 * 215.21846 * 1 2 3 27 27 H 1.09002 * 109.46979 * 335.21775 * 1 2 3 28 28 H 1.08997 * 109.88437 * 61.60404 * 6 5 3 29 29 H 1.09001 * 109.88192 * 300.59750 * 6 5 3 30 30 H 1.08998 * 110.71679 * 140.47858 * 7 6 5 31 31 H 1.09001 * 110.71660 * 263.57549 * 7 6 5 32 32 H 0.97001 * 120.00008 * 93.54777 * 10 8 7 33 33 H 0.97001 * 120.00279 * 180.02562 * 14 13 11 34 34 H 1.08999 * 110.29267 * 37.01969 * 19 5 3 35 35 H 1.09005 * 110.52520 * 274.75282 * 19 5 3 36 36 H 1.09000 * 109.98580 * 299.72921 * 21 20 2 37 37 H 1.08998 * 109.98365 * 61.03511 * 21 20 2 38 38 H 1.08999 * 110.79508 * 264.86354 * 22 21 20 39 39 H 1.09001 * 110.55560 * 141.99590 * 22 21 20 40 40 H 1.09005 * 110.83291 * 204.48760 * 23 22 21 41 41 H 1.09000 * 110.83349 * 80.91274 * 23 22 21 42 42 H 1.09005 * 110.43998 * 274.92135 * 24 20 2 43 43 H 1.08998 * 110.44618 * 37.44683 * 24 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2425 1.2738 0.0000 4 8 2.4227 1.8720 1.0434 5 7 2.7169 1.7781 -1.1564 6 6 2.6568 1.1168 -2.4681 7 6 3.3440 2.0498 -3.4874 8 6 4.2533 2.9326 -2.5923 9 1 5.1903 2.4242 -2.3654 10 7 4.5030 4.2333 -3.2187 11 6 5.5363 4.3789 -4.1054 12 1 6.1673 3.5352 -4.3426 13 6 5.7733 5.6114 -4.6986 14 7 5.0046 6.6397 -4.4091 15 14 7.1833 5.8103 -5.9077 16 1 6.9831 4.8915 -7.0570 17 1 7.2224 7.2121 -6.3961 18 1 8.4648 5.4853 -5.2314 19 6 3.3823 3.0870 -1.3206 20 6 2.1719 -1.1518 0.0005 21 6 3.6771 -1.3192 -0.0061 22 6 3.9584 -2.8361 -0.0089 23 6 2.6645 -3.4472 -0.6041 24 6 1.5625 -2.5426 0.0006 25 1 -0.3633 -0.0934 -1.0234 26 1 -0.3633 -0.8395 0.5926 27 1 -0.3633 0.9330 0.4308 28 1 1.6177 0.9557 -2.7548 29 1 3.1819 0.1625 -2.4266 30 1 3.9410 1.4748 -4.1951 31 1 2.6068 2.6580 -4.0115 32 1 3.9365 4.9912 -3.0053 33 1 5.1700 7.5009 -4.8239 34 1 4.0090 3.3036 -0.4555 35 1 2.6436 3.8764 -1.4601 36 1 4.0992 -0.8583 -0.8991 37 1 4.1064 -0.8644 0.8866 38 1 4.1230 -3.2010 1.0050 39 1 4.8162 -3.0651 -0.6412 40 1 2.5391 -4.4804 -0.2802 41 1 2.6682 -3.3786 -1.6920 42 1 1.3291 -2.8558 1.0182 43 1 0.6673 -2.5660 -0.6207 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000968395178.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:08:28 Heat of formation + Delta-G solvation = -40.969343 kcal Electronic energy + Delta-G solvation = -21998.469299 eV Core-core repulsion = 18849.481577 eV Total energy + Delta-G solvation = -3148.987722 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.30867 -39.20590 -38.51311 -35.94539 -34.46707 -33.18885 -31.03902 -30.06722 -29.31394 -28.50473 -26.19199 -25.05019 -23.74647 -21.79606 -21.59794 -21.07116 -19.30132 -19.00010 -17.65640 -17.50708 -16.67654 -16.58748 -16.14777 -15.99183 -15.33754 -14.83626 -14.67221 -14.38864 -14.29743 -14.23092 -13.84684 -13.57291 -13.30041 -13.18930 -13.11217 -13.02278 -12.74405 -12.63142 -12.38142 -12.18596 -12.12706 -12.02708 -11.85620 -11.78718 -11.66272 -11.44860 -10.94832 -10.92908 -9.76388 -9.68255 -9.07137 -7.95747 -5.26592 0.76665 1.47044 1.49046 1.51937 1.57929 1.96120 2.56742 3.28794 3.38479 3.63448 3.67454 3.79039 3.92511 4.02699 4.11504 4.16182 4.22569 4.28030 4.39366 4.46963 4.47998 4.62389 4.71737 4.76945 4.78759 4.80846 4.89412 4.92923 4.95434 5.04306 5.11058 5.13688 5.17710 5.19660 5.23231 5.38792 5.42443 5.48214 5.52398 5.71464 6.24353 6.45275 7.00493 7.31323 8.01682 8.26639 9.27438 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.026179 B = 0.003799 C = 0.003539 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1069.300809 B = 7367.937447 C = 7909.817762 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.178 4.178 3 C 0.571 3.429 4 O -0.594 6.594 5 N -0.606 5.606 6 C 0.113 3.887 7 C -0.142 4.142 8 C 0.168 3.832 9 H 0.059 0.941 10 N -0.729 5.729 11 C -0.243 4.243 12 H 0.081 0.919 13 C -0.072 4.072 14 N -0.970 5.970 15 Si 0.975 3.025 16 H -0.274 1.274 17 H -0.298 1.298 18 H -0.279 1.279 19 C 0.105 3.895 20 C -0.073 4.073 21 C -0.112 4.112 22 C -0.119 4.119 23 C -0.117 4.117 24 C -0.088 4.088 25 H 0.088 0.912 26 H 0.092 0.908 27 H 0.049 0.951 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.086 0.914 31 H 0.065 0.935 32 H 0.374 0.626 33 H 0.252 0.748 34 H 0.058 0.942 35 H 0.060 0.940 36 H 0.071 0.929 37 H 0.053 0.947 38 H 0.073 0.927 39 H 0.076 0.924 40 H 0.090 0.910 41 H 0.075 0.925 42 H 0.092 0.908 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.545 -23.524 5.651 25.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.181 4.181 3 C 0.362 3.638 4 O -0.475 6.475 5 N -0.338 5.338 6 C -0.009 4.009 7 C -0.183 4.183 8 C 0.058 3.942 9 H 0.077 0.923 10 N -0.369 5.369 11 C -0.375 4.375 12 H 0.099 0.901 13 C -0.265 4.265 14 N -0.620 5.620 15 Si 0.803 3.197 16 H -0.200 1.200 17 H -0.224 1.224 18 H -0.205 1.205 19 C -0.019 4.019 20 C -0.074 4.074 21 C -0.149 4.149 22 C -0.157 4.157 23 C -0.155 4.155 24 C -0.125 4.125 25 H 0.107 0.893 26 H 0.110 0.890 27 H 0.068 0.932 28 H 0.104 0.896 29 H 0.102 0.898 30 H 0.104 0.896 31 H 0.084 0.916 32 H 0.206 0.794 33 H 0.060 0.940 34 H 0.076 0.924 35 H 0.079 0.921 36 H 0.089 0.911 37 H 0.072 0.928 38 H 0.091 0.909 39 H 0.094 0.906 40 H 0.108 0.892 41 H 0.094 0.906 42 H 0.110 0.890 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -8.312 -23.276 6.146 25.468 hybrid contribution 0.760 1.474 -0.356 1.696 sum -7.552 -21.802 5.789 23.789 Atomic orbital electron populations 1.20603 0.87608 1.03083 1.03622 1.20665 0.97611 0.89865 1.09957 1.18771 0.77745 0.85851 0.81465 1.90765 1.60782 1.63298 1.32673 1.48610 1.57381 1.19107 1.08715 1.22140 1.02002 0.96172 0.80632 1.23205 0.99357 0.97984 0.97727 1.21399 0.95411 0.87207 0.90186 0.92259 1.42397 1.36137 1.07363 1.50976 1.19567 1.06245 0.95397 1.16255 0.90108 1.25582 1.02111 0.95708 1.03056 1.69814 1.42410 1.01217 1.48540 0.85199 0.79144 0.76285 0.79036 1.19953 1.22431 1.20501 1.22316 0.95609 0.85408 0.98539 1.22725 0.95861 0.94630 0.94216 1.21400 0.92935 0.99131 1.01421 1.22354 0.99100 0.92242 1.01965 1.22523 0.92970 0.99298 1.00676 1.21539 0.99156 0.89131 1.02661 0.89301 0.88963 0.93200 0.89630 0.89809 0.89561 0.91614 0.79361 0.93956 0.92366 0.92134 0.91100 0.92832 0.90863 0.90552 0.89191 0.90624 0.89001 0.88851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.66 9.48 71.24 0.67 -0.98 16 2 C -0.18 -4.27 4.93 -18.71 -0.09 -4.36 16 3 C 0.57 19.00 6.58 86.57 0.57 19.57 16 4 O -0.59 -25.17 17.36 -4.08 -0.07 -25.25 16 5 N -0.61 -19.32 3.34 -815.22 -2.72 -22.04 16 6 C 0.11 2.86 6.46 86.73 0.56 3.42 16 7 C -0.14 -4.46 6.65 31.78 0.21 -4.25 16 8 C 0.17 6.57 3.69 46.38 0.17 6.74 16 9 H 0.06 2.35 8.13 -2.39 -0.02 2.33 16 10 N -0.73 -36.24 5.28 -316.38 -1.67 -37.91 16 11 C -0.24 -13.14 9.98 84.03 0.84 -12.30 16 12 H 0.08 4.12 7.83 -2.91 -0.02 4.10 16 13 C -0.07 -4.07 5.50 84.86 0.47 -3.60 16 14 N -0.97 -58.89 13.06 21.65 0.28 -58.61 16 15 Si 0.97 45.21 29.55 68.60 2.03 47.24 16 16 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 17 H -0.30 -14.06 7.11 99.48 0.71 -13.35 16 18 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 19 C 0.11 3.96 6.57 86.79 0.57 4.53 16 20 C -0.07 -1.44 6.12 -17.01 -0.10 -1.54 16 21 C -0.11 -2.29 5.90 30.52 0.18 -2.11 16 22 C -0.12 -1.65 6.88 31.71 0.22 -1.43 16 23 C -0.12 -1.21 6.94 31.91 0.22 -0.99 16 24 C -0.09 -1.06 5.72 30.85 0.18 -0.88 16 25 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 26 H 0.09 1.22 7.48 -2.39 -0.02 1.21 16 27 H 0.05 1.05 8.08 -2.39 -0.02 1.04 16 28 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 29 H 0.08 1.81 6.84 -2.39 -0.02 1.79 16 30 H 0.09 2.52 8.14 -2.39 -0.02 2.50 16 31 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 32 H 0.37 20.20 7.71 -92.71 -0.71 19.48 16 33 H 0.25 14.89 8.31 -92.71 -0.77 14.12 16 34 H 0.06 2.37 8.00 -2.39 -0.02 2.35 16 35 H 0.06 2.38 8.00 -2.38 -0.02 2.36 16 36 H 0.07 1.55 6.84 -2.39 -0.02 1.54 16 37 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 38 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 40 H 0.09 0.63 8.14 -2.38 -0.02 0.61 16 41 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 42 H 0.09 0.98 8.14 -2.38 -0.02 0.96 16 43 H 0.09 0.85 7.77 -2.39 -0.02 0.83 16 Total: -1.00 -69.67 347.70 2.79 -66.88 By element: Atomic # 1 Polarization: 27.61 SS G_CDS: 0.27 Total: 27.88 kcal Atomic # 6 Polarization: -2.86 SS G_CDS: 4.66 Total: 1.81 kcal Atomic # 7 Polarization: -114.46 SS G_CDS: -4.11 Total: -118.56 kcal Atomic # 8 Polarization: -25.17 SS G_CDS: -0.07 Total: -25.25 kcal Atomic # 14 Polarization: 45.21 SS G_CDS: 2.03 Total: 47.24 kcal Total: -69.67 2.79 -66.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000968395178.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.912 kcal (2) G-P(sol) polarization free energy of solvation -69.666 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.754 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.881 kcal (6) G-S(sol) free energy of system = (1) + (5) -40.969 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds