Wall clock time and date at job start Tue Mar 31 2020 00:07:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.47111 * 120.00008 * 2 1 4 4 O 1.21609 * 119.99936 * 172.54537 * 3 2 1 5 5 N 1.34779 * 119.99497 * 352.54391 * 3 2 1 6 6 C 1.47430 * 125.64270 * 180.81099 * 5 3 2 7 7 C 1.54908 * 104.83097 * 204.09355 * 6 5 3 8 8 C 1.55161 * 101.58099 * 322.99587 * 7 6 5 9 9 H 1.09006 * 110.71537 * 276.95654 * 8 7 6 10 10 N 1.46500 * 110.71919 * 153.86876 * 8 7 6 11 11 C 1.46504 * 119.99797 * 301.44708 * 10 8 7 12 12 C 1.36933 * 120.00054 * 121.45116 * 10 8 7 13 13 H 1.08000 * 120.00209 * 31.50520 * 12 10 8 14 14 C 1.38818 * 120.00025 * 211.49882 * 12 10 8 15 15 N 1.31622 * 119.99367 * 6.66354 * 14 12 10 16 16 Si 1.86795 * 120.00232 * 186.66033 * 14 12 10 17 17 H 1.48499 * 109.47020 * 90.00029 * 16 14 12 18 18 H 1.48497 * 109.47308 * 210.00267 * 16 14 12 19 19 H 1.48504 * 109.46997 * 330.00280 * 16 14 12 20 20 C 1.47014 * 125.65206 * 0.50775 * 5 3 2 21 21 C 1.32994 * 120.00177 * 179.97438 * 2 1 3 22 22 C 1.51403 * 136.31695 * 359.97438 * 21 2 1 23 23 C 1.53671 * 87.49124 * 153.95837 * 22 21 2 24 24 C 1.51407 * 136.31671 * 180.02562 * 21 2 1 25 25 H 1.08997 * 109.46936 * 276.59581 * 1 2 3 26 26 H 1.08996 * 109.47094 * 36.59278 * 1 2 3 27 27 H 1.08994 * 109.46830 * 156.59273 * 1 2 3 28 28 H 1.09001 * 110.36831 * 322.93427 * 6 5 3 29 29 H 1.08998 * 110.36183 * 85.14615 * 6 5 3 30 30 H 1.09001 * 111.00279 * 81.06649 * 7 6 5 31 31 H 1.09001 * 111.00609 * 204.88045 * 7 6 5 32 32 H 1.09005 * 109.46978 * 85.41813 * 11 10 8 33 33 H 1.08997 * 109.47011 * 205.42189 * 11 10 8 34 34 H 1.09004 * 109.47185 * 325.42005 * 11 10 8 35 35 H 0.97009 * 119.99537 * 179.97438 * 15 14 12 36 36 H 1.08998 * 109.88269 * 298.39338 * 20 5 3 37 37 H 1.09004 * 109.88282 * 59.56010 * 20 5 3 38 38 H 1.09002 * 113.56213 * 268.63238 * 22 21 2 39 39 H 1.09000 * 113.55967 * 39.28520 * 22 21 2 40 40 H 1.09004 * 113.82813 * 139.89100 * 23 22 21 41 41 H 1.09000 * 113.82333 * 271.46766 * 23 22 21 42 42 H 1.09006 * 113.55785 * 320.63655 * 24 21 2 43 43 H 1.08999 * 113.56426 * 91.29714 * 24 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2426 1.2740 0.0000 4 8 3.4510 1.2784 0.1366 5 7 1.5771 2.4362 -0.1515 6 6 2.1879 3.7776 -0.1871 7 6 1.0543 4.7411 0.2446 8 6 -0.1832 4.0848 -0.4226 9 1 -0.2642 4.3873 -1.4667 10 7 -1.4067 4.4224 0.3092 11 6 -1.5331 4.0716 1.7260 12 6 -2.4319 5.0658 -0.3311 13 1 -2.6054 4.8921 -1.3828 14 6 -3.2486 5.9411 0.3717 15 7 -2.9599 6.2538 1.6173 16 14 -4.7569 6.6751 -0.4501 17 1 -5.9267 5.7902 -0.2184 18 1 -5.0299 8.0170 0.1242 19 1 -4.5132 6.8015 -1.9096 20 6 0.1228 2.5760 -0.3148 21 6 2.1720 -1.1517 0.0005 22 6 1.8139 -2.6228 0.0016 23 6 3.1698 -2.8842 -0.6727 24 6 3.6251 -1.5771 0.0012 25 1 -0.3633 0.1180 1.0208 26 1 -0.3633 0.8251 -0.6126 27 1 -0.3633 -0.9431 -0.4082 28 1 3.0210 3.8339 0.5135 29 1 2.5252 4.0140 -1.1963 30 1 0.9494 4.7597 1.3294 31 1 1.2239 5.7442 -0.1467 32 1 -1.0843 4.8557 2.3358 33 1 -2.5876 3.9705 1.9825 34 1 -1.0214 3.1276 1.9137 35 1 -3.5304 6.8658 2.1083 36 1 -0.1992 2.0646 -1.2219 37 1 -0.3895 2.1567 0.5513 38 1 1.7344 -3.0511 1.0008 39 1 0.9592 -2.8636 -0.6305 40 1 3.6815 -3.7727 -0.3029 41 1 3.1378 -2.8311 -1.7610 42 1 4.2605 -0.9582 -0.6325 43 1 4.0366 -1.7210 1.0002 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000971508355.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:07:01 Heat of formation + Delta-G solvation = 49.798769 kcal Electronic energy + Delta-G solvation = -22283.036736 eV Core-core repulsion = 19137.985015 eV Total energy + Delta-G solvation = -3145.051721 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.12425 -38.61557 -37.19105 -34.73533 -33.36670 -31.45981 -29.69532 -28.11487 -26.53051 -26.04802 -25.48272 -24.21436 -22.71760 -21.64240 -19.84170 -19.37388 -17.72646 -17.03104 -16.18953 -16.00161 -15.57106 -15.43214 -14.73594 -14.11071 -13.98505 -13.60756 -13.18438 -13.03838 -12.90031 -12.58663 -12.51971 -12.47718 -12.08644 -11.90134 -11.71287 -11.50891 -11.13915 -11.04229 -10.91161 -10.81400 -10.55196 -10.48653 -10.28838 -10.21378 -9.96459 -9.85162 -9.41265 -8.85798 -8.58999 -8.17927 -6.73612 -5.83911 -3.36999 1.45350 3.26919 3.32995 3.40082 3.40936 3.45737 4.28186 4.41385 4.45520 4.63110 4.91710 4.99720 5.18556 5.22894 5.31953 5.34229 5.47882 5.50881 5.55154 5.63055 5.64735 5.78023 5.79345 5.83240 5.90821 5.92304 6.02345 6.08681 6.13239 6.22939 6.33615 6.42803 6.59884 6.63880 6.77235 6.80197 6.91123 7.26330 7.62931 7.73513 7.85620 8.36538 8.44829 9.15096 9.74692 10.28452 11.22359 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.030895 B = 0.003948 C = 0.003689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.091738 B = 7090.162617 C = 7587.724297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.147 4.147 3 C 0.569 3.431 4 O -0.554 6.554 5 N -0.607 5.607 6 C 0.107 3.893 7 C -0.150 4.150 8 C 0.168 3.832 9 H 0.079 0.921 10 N -0.584 5.584 11 C 0.159 3.841 12 C -0.266 4.266 13 H 0.067 0.933 14 C 0.012 3.988 15 N -0.901 5.901 16 Si 0.906 3.094 17 H -0.287 1.287 18 H -0.290 1.290 19 H -0.278 1.278 20 C 0.072 3.928 21 C -0.086 4.086 22 C -0.103 4.103 23 C -0.142 4.142 24 C -0.099 4.099 25 H 0.071 0.929 26 H 0.102 0.898 27 H 0.061 0.939 28 H 0.070 0.930 29 H 0.062 0.938 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.022 0.978 33 H 0.052 0.948 34 H -0.003 1.003 35 H 0.254 0.746 36 H 0.071 0.929 37 H 0.083 0.917 38 H 0.097 0.903 39 H 0.075 0.925 40 H 0.074 0.926 41 H 0.082 0.918 42 H 0.081 0.919 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.095 -13.872 -3.302 16.397 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.150 4.150 3 C 0.360 3.640 4 O -0.434 6.434 5 N -0.340 5.340 6 C -0.015 4.015 7 C -0.190 4.190 8 C 0.057 3.943 9 H 0.097 0.903 10 N -0.304 5.304 11 C 0.015 3.985 12 C -0.395 4.395 13 H 0.085 0.915 14 C -0.188 4.188 15 N -0.545 5.545 16 Si 0.736 3.264 17 H -0.213 1.213 18 H -0.216 1.216 19 H -0.203 1.203 20 C -0.053 4.053 21 C -0.088 4.088 22 C -0.140 4.140 23 C -0.180 4.180 24 C -0.135 4.135 25 H 0.090 0.910 26 H 0.120 0.880 27 H 0.080 0.920 28 H 0.088 0.912 29 H 0.081 0.919 30 H 0.093 0.907 31 H 0.096 0.904 32 H 0.040 0.960 33 H 0.071 0.929 34 H 0.016 0.984 35 H 0.065 0.935 36 H 0.089 0.911 37 H 0.101 0.899 38 H 0.115 0.885 39 H 0.093 0.907 40 H 0.093 0.907 41 H 0.101 0.899 42 H 0.099 0.901 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 8.625 -13.796 -3.080 16.559 hybrid contribution -0.902 0.553 -0.260 1.090 sum 7.723 -13.243 -3.340 15.690 Atomic orbital electron populations 1.21633 0.90532 1.04393 1.03502 1.20453 0.96125 0.91003 1.07421 1.17948 0.86474 0.82929 0.76692 1.90727 1.13984 1.87232 1.51447 1.48360 1.08836 1.05863 1.70892 1.22238 0.96941 0.81511 1.00843 1.23352 0.95208 0.98200 1.02268 1.21433 0.86753 0.89573 0.96494 0.90304 1.43773 1.12312 1.66750 1.07594 1.20767 0.99824 0.93640 0.84302 1.19167 1.06477 1.19059 0.94845 0.91521 1.25244 1.00101 0.96836 0.96626 1.70024 1.38319 1.36462 1.09647 0.86248 0.82815 0.78451 0.78932 1.21342 1.21642 1.20322 1.23335 0.79550 1.01139 1.01236 1.23099 0.97807 0.93574 0.94315 1.22233 0.98278 0.91908 1.01538 1.22819 0.96827 0.98087 1.00232 1.22205 0.94147 0.95646 1.01530 0.91021 0.88039 0.92043 0.91197 0.91939 0.90700 0.90421 0.96006 0.92884 0.98426 0.93542 0.91117 0.89924 0.88501 0.90679 0.90702 0.89892 0.90075 0.88785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.85 8.37 36.01 0.30 -1.55 16 2 C -0.15 -2.15 5.98 -102.84 -0.62 -2.77 16 3 C 0.57 9.88 7.78 -12.66 -0.10 9.78 16 4 O -0.55 -10.88 15.52 5.27 0.08 -10.80 16 5 N -0.61 -10.20 3.33 -171.91 -0.57 -10.78 16 6 C 0.11 1.74 6.91 -2.53 -0.02 1.72 16 7 C -0.15 -2.67 6.65 -24.58 -0.16 -2.83 16 8 C 0.17 3.21 3.43 -66.09 -0.23 2.99 16 9 H 0.08 1.50 7.95 -51.93 -0.41 1.09 16 10 N -0.58 -13.64 2.91 -171.37 -0.50 -14.14 16 11 C 0.16 3.70 7.90 59.85 0.47 4.17 16 12 C -0.27 -6.88 9.52 -15.06 -0.14 -7.02 16 13 H 0.07 1.68 7.84 -52.49 -0.41 1.27 16 14 C 0.01 0.31 5.15 -17.43 -0.09 0.22 16 15 N -0.90 -25.25 10.98 55.49 0.61 -24.64 16 16 Si 0.91 20.92 29.56 -169.99 -5.02 15.89 16 17 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 18 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 19 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 20 C 0.07 1.19 4.54 -3.07 -0.01 1.17 16 21 C -0.09 -1.11 6.59 -100.48 -0.66 -1.77 16 22 C -0.10 -0.97 7.61 -27.41 -0.21 -1.18 16 23 C -0.14 -1.27 8.20 -25.90 -0.21 -1.48 16 24 C -0.10 -1.16 6.97 -27.26 -0.19 -1.35 16 25 H 0.07 0.92 7.84 -51.93 -0.41 0.51 16 26 H 0.10 1.36 3.44 -51.93 -0.18 1.18 16 27 H 0.06 0.67 7.59 -51.93 -0.39 0.28 16 28 H 0.07 1.14 8.03 -51.93 -0.42 0.73 16 29 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 30 H 0.07 1.45 7.12 -51.93 -0.37 1.09 16 31 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16 32 H 0.02 0.55 7.51 -51.93 -0.39 0.16 16 33 H 0.05 1.34 7.12 -51.93 -0.37 0.97 16 34 H 0.00 -0.05 6.16 -51.93 -0.32 -0.37 16 35 H 0.25 6.94 8.31 -40.82 -0.34 6.60 16 36 H 0.07 1.08 6.31 -51.93 -0.33 0.75 16 37 H 0.08 1.42 4.36 -51.93 -0.23 1.19 16 38 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.07 0.65 7.97 -51.93 -0.41 0.23 16 40 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 42 H 0.08 1.09 7.63 -51.93 -0.40 0.69 16 43 H 0.09 1.05 8.14 -51.93 -0.42 0.62 16 LS Contribution 333.24 15.07 5.02 5.02 Total: -1.00 -29.65 333.24 -8.95 -38.61 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: -6.71 Total: 0.72 kcal Atomic # 6 Polarization: 1.98 SS G_CDS: -1.87 Total: 0.11 kcal Atomic # 7 Polarization: -49.09 SS G_CDS: -0.46 Total: -49.56 kcal Atomic # 8 Polarization: -10.88 SS G_CDS: 0.08 Total: -10.80 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.89 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -29.65 -8.95 -38.61 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971508355.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.405 kcal (2) G-P(sol) polarization free energy of solvation -29.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.955 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.607 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.799 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds