Wall clock time and date at job start Tue Mar 31 2020 00:07:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.47111 * 120.00008 * 2 1 4 4 O 1.21609 * 119.99936 * 172.54537 * 3 2 1 5 5 N 1.34779 * 119.99497 * 352.54391 * 3 2 1 6 6 C 1.47430 * 125.64270 * 180.81099 * 5 3 2 7 7 C 1.54908 * 104.83097 * 204.09355 * 6 5 3 8 8 C 1.55161 * 101.58099 * 322.99587 * 7 6 5 9 9 H 1.09006 * 110.71537 * 276.95654 * 8 7 6 10 10 N 1.46500 * 110.71919 * 153.86876 * 8 7 6 11 11 C 1.46504 * 119.99797 * 301.44708 * 10 8 7 12 12 C 1.36933 * 120.00054 * 121.45116 * 10 8 7 13 13 H 1.08000 * 120.00209 * 31.50520 * 12 10 8 14 14 C 1.38818 * 120.00025 * 211.49882 * 12 10 8 15 15 N 1.31622 * 119.99367 * 6.66354 * 14 12 10 16 16 Si 1.86795 * 120.00232 * 186.66033 * 14 12 10 17 17 H 1.48499 * 109.47020 * 90.00029 * 16 14 12 18 18 H 1.48497 * 109.47308 * 210.00267 * 16 14 12 19 19 H 1.48504 * 109.46997 * 330.00280 * 16 14 12 20 20 C 1.47014 * 125.65206 * 0.50775 * 5 3 2 21 21 C 1.32994 * 120.00177 * 179.97438 * 2 1 3 22 22 C 1.51403 * 136.31695 * 359.97438 * 21 2 1 23 23 C 1.53671 * 87.49124 * 153.95837 * 22 21 2 24 24 C 1.51407 * 136.31671 * 180.02562 * 21 2 1 25 25 H 1.08997 * 109.46936 * 276.59581 * 1 2 3 26 26 H 1.08996 * 109.47094 * 36.59278 * 1 2 3 27 27 H 1.08994 * 109.46830 * 156.59273 * 1 2 3 28 28 H 1.09001 * 110.36831 * 322.93427 * 6 5 3 29 29 H 1.08998 * 110.36183 * 85.14615 * 6 5 3 30 30 H 1.09001 * 111.00279 * 81.06649 * 7 6 5 31 31 H 1.09001 * 111.00609 * 204.88045 * 7 6 5 32 32 H 1.09005 * 109.46978 * 85.41813 * 11 10 8 33 33 H 1.08997 * 109.47011 * 205.42189 * 11 10 8 34 34 H 1.09004 * 109.47185 * 325.42005 * 11 10 8 35 35 H 0.97009 * 119.99537 * 179.97438 * 15 14 12 36 36 H 1.08998 * 109.88269 * 298.39338 * 20 5 3 37 37 H 1.09004 * 109.88282 * 59.56010 * 20 5 3 38 38 H 1.09002 * 113.56213 * 268.63238 * 22 21 2 39 39 H 1.09000 * 113.55967 * 39.28520 * 22 21 2 40 40 H 1.09004 * 113.82813 * 139.89100 * 23 22 21 41 41 H 1.09000 * 113.82333 * 271.46766 * 23 22 21 42 42 H 1.09006 * 113.55785 * 320.63655 * 24 21 2 43 43 H 1.08999 * 113.56426 * 91.29714 * 24 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2426 1.2740 0.0000 4 8 3.4510 1.2784 0.1366 5 7 1.5771 2.4362 -0.1515 6 6 2.1879 3.7776 -0.1871 7 6 1.0543 4.7411 0.2446 8 6 -0.1832 4.0848 -0.4226 9 1 -0.2642 4.3873 -1.4667 10 7 -1.4067 4.4224 0.3092 11 6 -1.5331 4.0716 1.7260 12 6 -2.4319 5.0658 -0.3311 13 1 -2.6054 4.8921 -1.3828 14 6 -3.2486 5.9411 0.3717 15 7 -2.9599 6.2538 1.6173 16 14 -4.7569 6.6751 -0.4501 17 1 -5.9267 5.7902 -0.2184 18 1 -5.0299 8.0170 0.1242 19 1 -4.5132 6.8015 -1.9096 20 6 0.1228 2.5760 -0.3148 21 6 2.1720 -1.1517 0.0005 22 6 1.8139 -2.6228 0.0016 23 6 3.1698 -2.8842 -0.6727 24 6 3.6251 -1.5771 0.0012 25 1 -0.3633 0.1180 1.0208 26 1 -0.3633 0.8251 -0.6126 27 1 -0.3633 -0.9431 -0.4082 28 1 3.0210 3.8339 0.5135 29 1 2.5252 4.0140 -1.1963 30 1 0.9494 4.7597 1.3294 31 1 1.2239 5.7442 -0.1467 32 1 -1.0843 4.8557 2.3358 33 1 -2.5876 3.9705 1.9825 34 1 -1.0214 3.1276 1.9137 35 1 -3.5304 6.8658 2.1083 36 1 -0.1992 2.0646 -1.2219 37 1 -0.3895 2.1567 0.5513 38 1 1.7344 -3.0511 1.0008 39 1 0.9592 -2.8636 -0.6305 40 1 3.6815 -3.7727 -0.3029 41 1 3.1378 -2.8311 -1.7610 42 1 4.2605 -0.9582 -0.6325 43 1 4.0366 -1.7210 1.0002 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000971508355.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:07:00 Heat of formation + Delta-G solvation = 33.733767 kcal Electronic energy + Delta-G solvation = -22283.733367 eV Core-core repulsion = 19137.985015 eV Total energy + Delta-G solvation = -3145.748352 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.40578 -39.67463 -38.59426 -36.46671 -34.49960 -33.25414 -31.17218 -29.55641 -28.03397 -27.51392 -26.39085 -25.54293 -24.35809 -22.71951 -21.10466 -20.92654 -18.92160 -18.77386 -17.53771 -17.48709 -16.69374 -16.54988 -16.21915 -15.62612 -15.33500 -15.06561 -14.54898 -14.54258 -14.26301 -14.17856 -13.78725 -13.39882 -13.27861 -13.11592 -12.91691 -12.82990 -12.73064 -12.54380 -12.44606 -12.30617 -12.10821 -11.90247 -11.84446 -11.65162 -11.54677 -11.23550 -10.69347 -10.56661 -9.98501 -9.44862 -8.65898 -7.84279 -5.39194 0.36072 1.50827 1.51689 1.60214 1.98455 2.20027 2.52414 3.24201 3.32446 3.55854 3.64307 3.78192 3.82486 3.90905 4.00364 4.25328 4.27413 4.32475 4.42227 4.45366 4.61473 4.74109 4.75353 4.76500 4.82187 4.83618 4.94292 4.95373 4.99515 5.06615 5.10307 5.16258 5.22535 5.32924 5.36710 5.37707 5.44692 5.67951 5.70200 5.76402 6.38116 6.53442 7.11879 7.17300 7.84110 8.33615 9.20588 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.030895 B = 0.003948 C = 0.003689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.091738 B = 7090.162617 C = 7587.724297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.177 4.177 3 C 0.562 3.438 4 O -0.585 6.585 5 N -0.610 5.610 6 C 0.113 3.887 7 C -0.141 4.141 8 C 0.161 3.839 9 H 0.083 0.917 10 N -0.597 5.597 11 C 0.177 3.823 12 C -0.269 4.269 13 H 0.074 0.926 14 C -0.043 4.043 15 N -0.935 5.935 16 Si 0.968 3.032 17 H -0.285 1.285 18 H -0.299 1.299 19 H -0.266 1.266 20 C 0.088 3.912 21 C -0.083 4.083 22 C -0.094 4.094 23 C -0.128 4.128 24 C -0.111 4.111 25 H 0.066 0.934 26 H 0.093 0.907 27 H 0.082 0.918 28 H 0.066 0.934 29 H 0.079 0.921 30 H 0.054 0.946 31 H 0.080 0.920 32 H -0.006 1.006 33 H 0.027 0.973 34 H 0.024 0.976 35 H 0.249 0.751 36 H 0.091 0.909 37 H 0.078 0.922 38 H 0.115 0.885 39 H 0.090 0.910 40 H 0.098 0.902 41 H 0.086 0.914 42 H 0.058 0.942 43 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.000 -16.092 -4.624 18.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.180 4.180 3 C 0.355 3.645 4 O -0.468 6.468 5 N -0.342 5.342 6 C -0.009 4.009 7 C -0.181 4.181 8 C 0.052 3.948 9 H 0.102 0.898 10 N -0.318 5.318 11 C 0.032 3.968 12 C -0.399 4.399 13 H 0.092 0.908 14 C -0.239 4.239 15 N -0.580 5.580 16 Si 0.796 3.204 17 H -0.212 1.212 18 H -0.225 1.225 19 H -0.191 1.191 20 C -0.036 4.036 21 C -0.085 4.085 22 C -0.130 4.130 23 C -0.165 4.165 24 C -0.148 4.148 25 H 0.085 0.915 26 H 0.111 0.889 27 H 0.101 0.899 28 H 0.085 0.915 29 H 0.097 0.903 30 H 0.073 0.927 31 H 0.099 0.901 32 H 0.013 0.987 33 H 0.046 0.954 34 H 0.042 0.958 35 H 0.058 0.942 36 H 0.109 0.891 37 H 0.096 0.904 38 H 0.133 0.867 39 H 0.109 0.891 40 H 0.117 0.883 41 H 0.105 0.895 42 H 0.076 0.924 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 8.541 -16.034 -4.434 18.700 hybrid contribution -0.740 1.171 0.137 1.392 sum 7.801 -14.862 -4.297 17.327 Atomic orbital electron populations 1.21520 0.89256 1.05158 1.03157 1.20446 0.96955 0.90136 1.10485 1.18509 0.86346 0.83811 0.75864 1.90703 1.15337 1.87711 1.53066 1.48417 1.08843 1.06032 1.70909 1.22189 0.96068 0.81014 1.01646 1.23186 0.95328 0.98793 1.00798 1.21600 0.85558 0.91412 0.96231 0.89843 1.43909 1.13496 1.66852 1.07551 1.20459 0.98095 0.93899 0.84302 1.19530 1.06885 1.18298 0.95179 0.90818 1.25965 1.02961 0.97746 0.97190 1.70187 1.39388 1.37432 1.10995 0.85261 0.79612 0.77009 0.78474 1.21183 1.22542 1.19058 1.23146 0.79419 0.98964 1.02039 1.23684 0.98809 0.95048 0.90997 1.22336 0.99083 0.88711 1.02893 1.22798 0.96235 0.97180 1.00286 1.22362 0.93369 0.97241 1.01840 0.91491 0.88937 0.89887 0.91504 0.90251 0.92707 0.90127 0.98732 0.95448 0.95777 0.94223 0.89112 0.90421 0.86688 0.89131 0.88321 0.89546 0.92380 0.88274 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.18 8.37 71.24 0.60 -2.58 16 2 C -0.18 -4.94 5.98 -18.70 -0.11 -5.05 16 3 C 0.56 19.23 7.78 86.57 0.67 19.90 16 4 O -0.59 -23.09 15.52 -4.06 -0.06 -23.15 16 5 N -0.61 -20.02 3.33 -816.04 -2.71 -22.73 16 6 C 0.11 3.61 6.91 86.85 0.60 4.21 16 7 C -0.14 -4.99 6.65 31.99 0.21 -4.77 16 8 C 0.16 6.03 3.43 46.18 0.16 6.19 16 9 H 0.08 3.06 7.95 -2.38 -0.02 3.04 16 10 N -0.60 -27.86 2.91 -696.10 -2.03 -29.89 16 11 C 0.18 8.38 7.90 127.77 1.01 9.39 16 12 C -0.27 -13.82 9.52 84.04 0.80 -13.02 16 13 H 0.07 3.63 7.84 -2.91 -0.02 3.60 16 14 C -0.04 -2.27 5.15 84.86 0.44 -1.83 16 15 N -0.93 -53.53 10.98 21.65 0.24 -53.29 16 16 Si 0.97 43.07 29.56 68.60 2.03 45.10 16 17 H -0.29 -12.51 7.11 99.48 0.71 -11.80 16 18 H -0.30 -13.59 7.11 99.48 0.71 -12.88 16 19 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 20 C 0.09 2.81 4.54 86.73 0.39 3.21 16 21 C -0.08 -1.98 6.59 -17.17 -0.11 -2.09 16 22 C -0.09 -1.42 7.61 30.16 0.23 -1.19 16 23 C -0.13 -1.86 8.20 31.14 0.26 -1.60 16 24 C -0.11 -2.45 6.97 30.25 0.21 -2.24 16 25 H 0.07 1.61 7.84 -2.39 -0.02 1.59 16 26 H 0.09 2.29 3.44 -2.39 -0.01 2.28 16 27 H 0.08 1.55 7.59 -2.39 -0.02 1.54 16 28 H 0.07 2.18 8.03 -2.39 -0.02 2.16 16 29 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 30 H 0.05 2.16 7.12 -2.39 -0.02 2.15 16 31 H 0.08 2.78 8.14 -2.39 -0.02 2.76 16 32 H -0.01 -0.30 7.51 -2.38 -0.02 -0.31 16 33 H 0.03 1.40 7.12 -2.39 -0.02 1.38 16 34 H 0.02 0.99 6.16 -2.38 -0.01 0.98 16 35 H 0.25 13.93 8.31 -92.70 -0.77 13.16 16 36 H 0.09 2.58 6.31 -2.39 -0.02 2.56 16 37 H 0.08 2.58 4.36 -2.39 -0.01 2.57 16 38 H 0.12 1.41 8.14 -2.39 -0.02 1.39 16 39 H 0.09 1.16 7.97 -2.39 -0.02 1.14 16 40 H 0.10 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.09 1.22 8.14 -2.39 -0.02 1.20 16 42 H 0.06 1.55 7.63 -2.38 -0.02 1.53 16 43 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 Total: -1.00 -64.41 333.24 3.81 -60.60 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: 1.00 Total: 14.85 kcal Atomic # 6 Polarization: 3.16 SS G_CDS: 5.35 Total: 8.52 kcal Atomic # 7 Polarization: -101.41 SS G_CDS: -4.50 Total: -105.91 kcal Atomic # 8 Polarization: -23.09 SS G_CDS: -0.06 Total: -23.15 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 2.03 Total: 45.10 kcal Total: -64.41 3.81 -60.60 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000971508355.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.332 kcal (2) G-P(sol) polarization free energy of solvation -64.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.921 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.598 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds