Wall clock time and date at job start Tue Mar 31 2020 00:03:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53010 * 110.77728 * 2 1 4 4 C 1.54319 * 110.72348 * 236.76105 * 2 1 3 5 5 N 1.47017 * 107.27309 * 263.82852 * 4 2 1 6 6 C 1.36933 * 125.65306 * 181.02359 * 5 4 2 7 7 H 1.08001 * 119.99777 * 0.02562 * 6 5 4 8 8 C 1.38811 * 120.00519 * 180.02562 * 6 5 4 9 9 N 1.31616 * 119.99666 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 120.00251 * 179.97438 * 8 6 5 11 11 H 1.48493 * 109.46895 * 60.00230 * 10 8 6 12 12 H 1.48503 * 109.47063 * 180.02562 * 10 8 6 13 13 H 1.48495 * 109.47142 * 300.00227 * 10 8 6 14 14 C 1.47429 * 108.70022 * 1.05970 * 5 4 2 15 15 C 1.54907 * 104.83228 * 335.86828 * 14 5 4 16 16 H 1.09003 * 111.00164 * 155.12112 * 15 14 5 17 17 N 1.46498 * 111.00431 * 278.93881 * 15 14 5 18 18 C 1.34777 * 119.99828 * 273.26684 * 17 15 14 19 19 O 1.21283 * 120.00222 * 0.28168 * 18 17 15 20 20 C 1.50703 * 120.00290 * 180.27728 * 18 17 15 21 21 H 1.08999 * 115.54699 * 325.58852 * 20 18 17 22 22 C 1.53001 * 117.49908 * 111.25493 * 20 18 17 23 23 C 1.52985 * 117.50172 * 179.91383 * 20 18 17 24 24 C 1.52996 * 138.58971 * 121.61677 * 23 20 18 25 25 C 1.52992 * 59.99936 * 229.10833 * 24 23 20 26 26 H 1.09003 * 109.47622 * 296.76245 * 1 2 3 27 27 H 1.09002 * 109.46976 * 56.76091 * 1 2 3 28 28 H 1.08997 * 109.46933 * 176.76099 * 1 2 3 29 29 H 1.09005 * 109.46549 * 183.23686 * 3 2 1 30 30 H 1.08996 * 109.47077 * 303.23836 * 3 2 1 31 31 H 1.08995 * 109.46791 * 63.23745 * 3 2 1 32 32 H 1.09004 * 109.88376 * 144.40653 * 4 2 1 33 33 H 1.09005 * 110.00904 * 23.32017 * 4 2 1 34 34 H 0.97004 * 119.99780 * 179.97438 * 9 8 6 35 35 H 1.09006 * 110.36433 * 217.02822 * 14 5 4 36 36 H 1.09003 * 110.45884 * 94.76178 * 14 5 4 37 37 H 0.97001 * 120.00384 * 93.55131 * 17 15 14 38 38 H 1.09000 * 117.49803 * 214.98054 * 22 20 18 39 39 H 1.08997 * 117.49835 * 0.02562 * 22 20 18 40 40 H 1.09000 * 117.49867 * 336.60294 * 24 23 20 41 41 H 1.09004 * 117.49835 * 121.61340 * 24 23 20 42 42 H 1.09000 * 117.49849 * 252.50828 * 25 24 23 43 43 H 1.09002 * 117.49935 * 107.49140 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0728 1.4306 0.0000 4 6 2.0761 -0.7911 -1.2072 5 7 2.3717 -2.1530 -0.7390 6 6 2.8934 -3.1636 -1.5017 7 1 3.1236 -2.9908 -2.5426 8 6 3.1263 -4.4101 -0.9370 9 7 2.8452 -4.6208 0.3314 10 14 3.8373 -5.7889 -1.9777 11 1 5.1646 -5.3790 -2.5022 12 1 3.9887 -7.0095 -1.1455 13 1 2.9231 -6.0743 -3.1126 14 6 2.0126 -2.2508 0.6876 15 6 2.0790 -0.7954 1.2138 16 1 1.4400 -0.6663 2.0875 17 7 3.4595 -0.4081 1.5145 18 6 3.9869 -0.6788 2.7248 19 8 3.3203 -1.2476 3.5634 20 6 5.4050 -0.2749 3.0363 21 1 6.1026 -0.3256 2.2004 22 6 5.6126 0.8403 4.0631 23 6 5.9450 -0.6085 4.4283 24 6 7.0960 -1.3991 5.0534 25 6 5.6664 -1.5997 5.5599 26 1 -0.3634 0.4627 0.9176 27 1 -0.3633 0.5633 -0.8595 28 1 -0.3633 -1.0260 -0.0581 29 1 3.1610 1.4062 -0.0580 30 1 1.6750 1.9701 -0.8595 31 1 1.7690 1.9344 0.9176 32 1 2.9869 -0.3205 -1.5775 33 1 1.3283 -0.8257 -1.9996 34 1 3.0077 -5.4920 0.7259 35 1 2.7293 -2.8787 1.2170 36 1 1.0044 -2.6495 0.8002 37 1 3.9926 0.0468 0.8439 38 1 6.4471 1.5230 3.9028 39 1 4.7235 1.2815 4.5136 40 1 7.5369 -2.2002 4.4602 41 1 7.7872 -0.8567 5.6986 42 1 5.4169 -1.1893 6.5384 43 1 5.1666 -2.5329 5.3000 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000975075423.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:03:33 Heat of formation + Delta-G solvation = 48.736066 kcal Electronic energy + Delta-G solvation = -22711.284556 eV Core-core repulsion = 19566.186752 eV Total energy + Delta-G solvation = -3145.097804 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -39.81608 -38.46408 -36.82798 -33.77360 -32.95339 -32.35349 -30.67406 -28.16647 -26.85868 -25.59296 -24.24513 -22.78226 -22.27636 -20.56168 -19.78992 -19.14988 -18.32022 -16.82423 -16.53756 -15.79967 -14.98138 -14.85642 -14.67214 -14.13833 -13.87720 -13.76592 -13.70148 -13.14009 -12.72355 -12.27989 -12.17227 -11.90549 -11.73045 -11.55404 -11.36780 -11.25923 -11.14176 -10.97466 -10.74811 -10.38931 -10.20665 -10.10264 -9.98511 -9.90965 -9.86541 -9.76349 -9.65747 -9.19153 -8.64102 -8.26049 -6.77896 -5.59577 -3.02904 2.96790 3.41347 3.45594 3.47690 3.49594 3.88968 4.03246 4.42814 4.50995 4.89749 4.96782 5.01256 5.26780 5.31469 5.37876 5.54121 5.54968 5.63821 5.67919 5.68644 5.73376 5.76210 5.82834 5.90104 6.02059 6.05650 6.06007 6.13190 6.21625 6.29520 6.32567 6.44904 6.51133 6.64705 6.73046 6.82008 7.06070 7.54410 7.65006 7.92887 8.14853 8.43470 8.85159 9.25172 9.86864 10.51318 11.42626 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.013042 B = 0.006646 C = 0.004865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2146.332603 B = 4211.856256 C = 5754.468595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.087 4.087 3 C -0.130 4.130 4 C 0.144 3.856 5 N -0.600 5.600 6 C -0.226 4.226 7 H 0.075 0.925 8 C -0.009 4.009 9 N -0.916 5.916 10 Si 0.912 3.088 11 H -0.286 1.286 12 H -0.290 1.290 13 H -0.286 1.286 14 C 0.146 3.854 15 C 0.126 3.874 16 H 0.083 0.917 17 N -0.700 5.700 18 C 0.541 3.459 19 O -0.538 6.538 20 C -0.136 4.136 21 H 0.121 0.879 22 C -0.104 4.104 23 C -0.199 4.199 24 C -0.133 4.133 25 C -0.112 4.112 26 H 0.050 0.950 27 H 0.054 0.946 28 H 0.063 0.937 29 H 0.052 0.948 30 H 0.053 0.947 31 H 0.052 0.948 32 H 0.020 0.980 33 H 0.023 0.977 34 H 0.252 0.748 35 H 0.113 0.887 36 H 0.019 0.981 37 H 0.395 0.605 38 H 0.102 0.898 39 H 0.099 0.901 40 H 0.096 0.904 41 H 0.095 0.905 42 H 0.093 0.907 43 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.962 12.875 5.445 14.530 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.089 4.089 3 C -0.188 4.188 4 C 0.018 3.982 5 N -0.326 5.326 6 C -0.354 4.354 7 H 0.093 0.907 8 C -0.205 4.205 9 N -0.564 5.564 10 Si 0.743 3.257 11 H -0.213 1.213 12 H -0.216 1.216 13 H -0.213 1.213 14 C 0.021 3.979 15 C 0.021 3.979 16 H 0.101 0.899 17 N -0.349 5.349 18 C 0.326 3.674 19 O -0.415 6.415 20 C -0.157 4.157 21 H 0.138 0.862 22 C -0.141 4.141 23 C -0.200 4.200 24 C -0.170 4.170 25 C -0.149 4.149 26 H 0.069 0.931 27 H 0.073 0.927 28 H 0.082 0.918 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.038 0.962 33 H 0.041 0.959 34 H 0.063 0.937 35 H 0.131 0.869 36 H 0.036 0.964 37 H 0.230 0.770 38 H 0.120 0.880 39 H 0.117 0.883 40 H 0.114 0.886 41 H 0.113 0.887 42 H 0.112 0.888 43 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 3.521 12.217 6.055 14.082 hybrid contribution 0.586 -0.597 -1.147 1.419 sum 4.107 11.620 4.909 13.266 Atomic orbital electron populations 1.21682 0.93597 1.02465 1.00817 1.21836 0.95975 0.94562 0.96486 1.21715 1.00414 0.95440 1.01232 1.21396 0.96382 0.86849 0.93609 1.44445 1.74199 1.06624 1.07378 1.18972 1.34348 0.89279 0.92820 0.90679 1.24794 1.01754 0.97617 0.96333 1.69808 1.53500 1.22309 1.10776 0.86199 0.78857 0.81687 0.78996 1.21288 1.21620 1.21260 1.22295 0.99999 0.90614 0.85008 1.22474 0.81401 0.98109 0.95963 0.89925 1.45728 1.14849 1.60021 1.14341 1.19450 0.87002 0.78816 0.82107 1.90671 1.61859 1.41338 1.47617 1.21987 0.95784 1.04550 0.93404 0.86156 1.22633 1.02612 0.89358 0.99513 1.21104 1.05692 0.97050 0.96157 1.22745 0.91308 1.00983 1.01923 1.22575 0.97060 0.99469 0.95816 0.93109 0.92737 0.91773 0.92881 0.92767 0.92844 0.96168 0.95948 0.93681 0.86931 0.96361 0.77026 0.88003 0.88312 0.88558 0.88657 0.88822 0.87955 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.96 8.41 37.16 0.31 -1.65 16 2 C -0.09 -1.47 0.81 -152.67 -0.12 -1.59 16 3 C -0.13 -1.72 8.07 37.16 0.30 -1.42 16 4 C 0.14 2.91 6.40 -3.07 -0.02 2.89 16 5 N -0.60 -15.17 3.39 -170.07 -0.58 -15.75 16 6 C -0.23 -6.29 10.27 -15.06 -0.15 -6.45 16 7 H 0.08 2.02 7.83 -52.49 -0.41 1.61 16 8 C -0.01 -0.26 5.49 -17.43 -0.10 -0.35 16 9 N -0.92 -27.46 10.09 55.49 0.56 -26.90 16 10 Si 0.91 22.41 29.55 -169.99 -5.02 17.38 16 11 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 12 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 13 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 14 C 0.15 3.66 5.27 -2.53 -0.01 3.65 16 15 C 0.13 2.47 2.56 -65.78 -0.17 2.30 16 16 H 0.08 1.67 7.62 -51.93 -0.40 1.27 16 17 N -0.70 -12.55 4.69 -51.73 -0.24 -12.79 16 18 C 0.54 10.13 7.61 -10.98 -0.08 10.05 16 19 O -0.54 -12.03 15.99 5.55 0.09 -11.94 16 20 C -0.14 -2.02 6.19 -91.78 -0.57 -2.59 16 21 H 0.12 1.62 8.14 -51.93 -0.42 1.20 16 22 C -0.10 -1.24 10.24 -26.70 -0.27 -1.52 16 23 C -0.20 -2.81 5.06 -154.49 -0.78 -3.59 16 24 C -0.13 -1.58 10.53 -26.74 -0.28 -1.86 16 25 C -0.11 -1.56 10.16 -26.74 -0.27 -1.83 16 26 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 27 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.06 1.12 7.58 -51.93 -0.39 0.73 16 29 H 0.05 0.67 6.35 -51.93 -0.33 0.34 16 30 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.02 0.40 7.76 -51.93 -0.40 0.00 16 33 H 0.02 0.46 7.85 -51.93 -0.41 0.05 16 34 H 0.25 7.44 8.31 -40.82 -0.34 7.10 16 35 H 0.11 3.29 5.88 -51.93 -0.31 2.99 16 36 H 0.02 0.50 7.81 -51.93 -0.41 0.09 16 37 H 0.40 6.31 6.88 -40.82 -0.28 6.02 16 38 H 0.10 0.95 8.14 -51.93 -0.42 0.52 16 39 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 40 H 0.10 1.15 8.14 -51.93 -0.42 0.72 16 41 H 0.10 0.92 8.14 -51.93 -0.42 0.49 16 42 H 0.09 1.14 8.14 -51.93 -0.42 0.71 16 43 H 0.10 1.63 8.14 -51.93 -0.42 1.21 16 LS Contribution 345.54 15.07 5.21 5.21 Total: -1.00 -32.42 345.54 -9.33 -41.74 By element: Atomic # 1 Polarization: 14.14 SS G_CDS: -7.12 Total: 7.02 kcal Atomic # 6 Polarization: -1.74 SS G_CDS: -2.22 Total: -3.96 kcal Atomic # 7 Polarization: -55.18 SS G_CDS: -0.26 Total: -55.44 kcal Atomic # 8 Polarization: -12.03 SS G_CDS: 0.09 Total: -11.94 kcal Atomic # 14 Polarization: 22.41 SS G_CDS: -5.02 Total: 17.38 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -32.42 -9.33 -41.74 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000975075423.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.478 kcal (2) G-P(sol) polarization free energy of solvation -32.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.742 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds