Wall clock time and date at job start Tue Mar 31 2020 00:03:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53010 * 110.77728 * 2 1 4 4 C 1.54319 * 110.72348 * 236.76105 * 2 1 3 5 5 N 1.47017 * 107.27309 * 263.82852 * 4 2 1 6 6 C 1.36933 * 125.65306 * 181.02359 * 5 4 2 7 7 H 1.08001 * 119.99777 * 0.02562 * 6 5 4 8 8 C 1.38811 * 120.00519 * 180.02562 * 6 5 4 9 9 N 1.31616 * 119.99666 * 0.02562 * 8 6 5 10 10 Si 1.86799 * 120.00251 * 179.97438 * 8 6 5 11 11 H 1.48493 * 109.46895 * 60.00230 * 10 8 6 12 12 H 1.48503 * 109.47063 * 180.02562 * 10 8 6 13 13 H 1.48495 * 109.47142 * 300.00227 * 10 8 6 14 14 C 1.47429 * 108.70022 * 1.05970 * 5 4 2 15 15 C 1.54907 * 104.83228 * 335.86828 * 14 5 4 16 16 H 1.09003 * 111.00164 * 155.12112 * 15 14 5 17 17 N 1.46498 * 111.00431 * 278.93881 * 15 14 5 18 18 C 1.34777 * 119.99828 * 273.26684 * 17 15 14 19 19 O 1.21283 * 120.00222 * 0.28168 * 18 17 15 20 20 C 1.50703 * 120.00290 * 180.27728 * 18 17 15 21 21 H 1.08999 * 115.54699 * 325.58852 * 20 18 17 22 22 C 1.53001 * 117.49908 * 111.25493 * 20 18 17 23 23 C 1.52985 * 117.50172 * 179.91383 * 20 18 17 24 24 C 1.52996 * 138.58971 * 121.61677 * 23 20 18 25 25 C 1.52992 * 59.99936 * 229.10833 * 24 23 20 26 26 H 1.09003 * 109.47622 * 296.76245 * 1 2 3 27 27 H 1.09002 * 109.46976 * 56.76091 * 1 2 3 28 28 H 1.08997 * 109.46933 * 176.76099 * 1 2 3 29 29 H 1.09005 * 109.46549 * 183.23686 * 3 2 1 30 30 H 1.08996 * 109.47077 * 303.23836 * 3 2 1 31 31 H 1.08995 * 109.46791 * 63.23745 * 3 2 1 32 32 H 1.09004 * 109.88376 * 144.40653 * 4 2 1 33 33 H 1.09005 * 110.00904 * 23.32017 * 4 2 1 34 34 H 0.97004 * 119.99780 * 179.97438 * 9 8 6 35 35 H 1.09006 * 110.36433 * 217.02822 * 14 5 4 36 36 H 1.09003 * 110.45884 * 94.76178 * 14 5 4 37 37 H 0.97001 * 120.00384 * 93.55131 * 17 15 14 38 38 H 1.09000 * 117.49803 * 214.98054 * 22 20 18 39 39 H 1.08997 * 117.49835 * 0.02562 * 22 20 18 40 40 H 1.09000 * 117.49867 * 336.60294 * 24 23 20 41 41 H 1.09004 * 117.49835 * 121.61340 * 24 23 20 42 42 H 1.09000 * 117.49849 * 252.50828 * 25 24 23 43 43 H 1.09002 * 117.49935 * 107.49140 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0728 1.4306 0.0000 4 6 2.0761 -0.7911 -1.2072 5 7 2.3717 -2.1530 -0.7390 6 6 2.8934 -3.1636 -1.5017 7 1 3.1236 -2.9908 -2.5426 8 6 3.1263 -4.4101 -0.9370 9 7 2.8452 -4.6208 0.3314 10 14 3.8373 -5.7889 -1.9777 11 1 5.1646 -5.3790 -2.5022 12 1 3.9887 -7.0095 -1.1455 13 1 2.9231 -6.0743 -3.1126 14 6 2.0126 -2.2508 0.6876 15 6 2.0790 -0.7954 1.2138 16 1 1.4400 -0.6663 2.0875 17 7 3.4595 -0.4081 1.5145 18 6 3.9869 -0.6788 2.7248 19 8 3.3203 -1.2476 3.5634 20 6 5.4050 -0.2749 3.0363 21 1 6.1026 -0.3256 2.2004 22 6 5.6126 0.8403 4.0631 23 6 5.9450 -0.6085 4.4283 24 6 7.0960 -1.3991 5.0534 25 6 5.6664 -1.5997 5.5599 26 1 -0.3634 0.4627 0.9176 27 1 -0.3633 0.5633 -0.8595 28 1 -0.3633 -1.0260 -0.0581 29 1 3.1610 1.4062 -0.0580 30 1 1.6750 1.9701 -0.8595 31 1 1.7690 1.9344 0.9176 32 1 2.9869 -0.3205 -1.5775 33 1 1.3283 -0.8257 -1.9996 34 1 3.0077 -5.4920 0.7259 35 1 2.7293 -2.8787 1.2170 36 1 1.0044 -2.6495 0.8002 37 1 3.9926 0.0468 0.8439 38 1 6.4471 1.5230 3.9028 39 1 4.7235 1.2815 4.5136 40 1 7.5369 -2.2002 4.4602 41 1 7.7872 -0.8567 5.6986 42 1 5.4169 -1.1893 6.5384 43 1 5.1666 -2.5329 5.3000 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000975075423.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:03:33 Heat of formation + Delta-G solvation = 28.488404 kcal Electronic energy + Delta-G solvation = -22712.162560 eV Core-core repulsion = 19566.186752 eV Total energy + Delta-G solvation = -3145.975808 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.29399 -39.87111 -38.14201 -35.66888 -34.47383 -33.45018 -32.61672 -29.88315 -28.09799 -27.43860 -25.74960 -24.30710 -23.28520 -22.21510 -21.30536 -20.47247 -19.67114 -18.71669 -18.02674 -17.39196 -16.63555 -16.14732 -15.89045 -15.70754 -15.42415 -15.30300 -15.20061 -14.63692 -14.11540 -13.76403 -13.70087 -13.42710 -13.05277 -13.01274 -12.87326 -12.64940 -12.59861 -12.56497 -12.36538 -12.17413 -11.79601 -11.76657 -11.43594 -11.36599 -11.15561 -11.03558 -10.91519 -10.80789 -10.61078 -9.90792 -8.85858 -7.76258 -5.21965 1.42179 1.45749 1.52391 1.59258 2.20457 2.47549 2.77211 2.89915 3.32538 3.36713 3.56839 3.67968 3.83427 3.89827 3.97361 4.07489 4.17990 4.41457 4.50107 4.54023 4.61834 4.74000 4.75633 4.78037 4.83308 4.83815 4.88080 4.92123 5.01109 5.04273 5.06879 5.11864 5.20221 5.27596 5.31585 5.33500 5.47119 5.53530 5.71986 5.83927 6.30429 6.69756 7.07842 7.40002 7.78337 8.42288 9.23638 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.013042 B = 0.006646 C = 0.004865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2146.332603 B = 4211.856256 C = 5754.468595 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.073 4.073 3 C -0.123 4.123 4 C 0.138 3.862 5 N -0.617 5.617 6 C -0.234 4.234 7 H 0.085 0.915 8 C -0.071 4.071 9 N -0.949 5.949 10 Si 0.978 3.022 11 H -0.274 1.274 12 H -0.300 1.300 13 H -0.277 1.277 14 C 0.155 3.845 15 C 0.138 3.862 16 H 0.075 0.925 17 N -0.691 5.691 18 C 0.532 3.468 19 O -0.585 6.585 20 C -0.155 4.155 21 H 0.136 0.864 22 C -0.067 4.067 23 C -0.228 4.228 24 C -0.106 4.106 25 C -0.134 4.134 26 H 0.069 0.931 27 H 0.081 0.919 28 H 0.031 0.969 29 H 0.060 0.940 30 H 0.078 0.922 31 H 0.066 0.934 32 H 0.035 0.965 33 H 0.025 0.975 34 H 0.242 0.758 35 H 0.067 0.933 36 H -0.019 1.019 37 H 0.407 0.593 38 H 0.141 0.859 39 H 0.097 0.903 40 H 0.092 0.908 41 H 0.129 0.871 42 H 0.109 0.891 43 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.544 16.024 4.561 17.559 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.074 4.074 3 C -0.181 4.181 4 C 0.013 3.987 5 N -0.343 5.343 6 C -0.363 4.363 7 H 0.103 0.897 8 C -0.263 4.263 9 N -0.599 5.599 10 Si 0.807 3.193 11 H -0.200 1.200 12 H -0.226 1.226 13 H -0.203 1.203 14 C 0.029 3.971 15 C 0.032 3.968 16 H 0.093 0.907 17 N -0.342 5.342 18 C 0.320 3.680 19 O -0.465 6.465 20 C -0.176 4.176 21 H 0.154 0.846 22 C -0.104 4.104 23 C -0.228 4.228 24 C -0.142 4.142 25 C -0.171 4.171 26 H 0.088 0.912 27 H 0.100 0.900 28 H 0.050 0.950 29 H 0.079 0.921 30 H 0.096 0.904 31 H 0.086 0.914 32 H 0.053 0.947 33 H 0.043 0.957 34 H 0.051 0.949 35 H 0.085 0.915 36 H -0.001 1.001 37 H 0.244 0.756 38 H 0.159 0.841 39 H 0.115 0.885 40 H 0.110 0.890 41 H 0.147 0.853 42 H 0.127 0.873 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 5.117 15.423 5.123 17.038 hybrid contribution 0.034 -1.605 -0.888 1.834 sum 5.151 13.818 4.235 15.343 Atomic orbital electron populations 1.21690 0.92517 1.01119 1.03052 1.21828 0.96815 0.96119 0.92680 1.21685 1.00851 0.92410 1.03107 1.21649 0.97129 0.84774 0.95105 1.44677 1.73944 1.08286 1.07419 1.19416 1.33324 0.90103 0.93469 0.89741 1.25664 1.02946 1.00242 0.97440 1.70139 1.55187 1.21961 1.12583 0.85148 0.78588 0.78231 0.77357 1.19990 1.22610 1.20277 1.21922 0.96419 0.93504 0.85302 1.22125 0.82720 0.95269 0.96734 0.90741 1.45649 1.14273 1.59595 1.14638 1.20266 0.88462 0.77688 0.81593 1.90648 1.63487 1.43338 1.49026 1.21989 0.93155 1.07691 0.94781 0.84628 1.22772 1.03485 0.88360 0.95809 1.21453 1.07057 0.98961 0.95373 1.22829 0.90381 1.00139 1.00870 1.22544 0.99222 0.98492 0.96865 0.91246 0.90049 0.95007 0.92133 0.90352 0.91449 0.94663 0.95702 0.94885 0.91544 1.00109 0.75581 0.84125 0.88493 0.88969 0.85342 0.87268 0.91550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.68 8.41 71.98 0.61 -3.08 16 2 C -0.07 -2.34 0.81 -50.99 -0.04 -2.38 16 3 C -0.12 -2.76 8.07 71.99 0.58 -2.18 16 4 C 0.14 5.43 6.40 86.73 0.56 5.98 16 5 N -0.62 -31.88 3.39 -691.98 -2.35 -34.23 16 6 C -0.23 -13.25 10.27 84.03 0.86 -12.39 16 7 H 0.08 4.51 7.83 -2.91 -0.02 4.49 16 8 C -0.07 -4.14 5.49 84.86 0.47 -3.68 16 9 N -0.95 -60.10 10.09 21.65 0.22 -59.88 16 10 Si 0.98 47.11 29.55 68.60 2.03 49.14 16 11 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 12 H -0.30 -14.74 7.11 99.48 0.71 -14.04 16 13 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 14 C 0.15 8.19 5.27 86.85 0.46 8.65 16 15 C 0.14 5.51 2.56 46.38 0.12 5.63 16 16 H 0.07 3.11 7.62 -2.39 -0.02 3.09 16 17 N -0.69 -24.69 4.69 -435.96 -2.05 -26.73 16 18 C 0.53 20.25 7.61 87.66 0.67 20.92 16 19 O -0.58 -27.50 15.99 -3.04 -0.05 -27.55 16 20 C -0.16 -4.43 6.19 -11.54 -0.07 -4.50 16 21 H 0.14 3.40 8.14 -2.39 -0.02 3.38 16 22 C -0.07 -1.40 10.24 30.62 0.31 -1.09 16 23 C -0.23 -6.11 5.06 -52.17 -0.26 -6.37 16 24 C -0.11 -2.32 10.53 30.59 0.32 -2.00 16 25 C -0.13 -3.78 10.16 30.59 0.31 -3.47 16 26 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 27 H 0.08 1.94 8.14 -2.39 -0.02 1.92 16 28 H 0.03 1.12 7.58 -2.39 -0.02 1.10 16 29 H 0.06 1.28 6.35 -2.38 -0.02 1.27 16 30 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 31 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 32 H 0.04 1.30 7.76 -2.39 -0.02 1.28 16 33 H 0.02 0.98 7.85 -2.38 -0.02 0.96 16 34 H 0.24 15.12 8.31 -92.71 -0.77 14.35 16 35 H 0.07 4.17 5.88 -2.38 -0.01 4.15 16 36 H -0.02 -1.10 7.81 -2.39 -0.02 -1.12 16 37 H 0.41 12.37 6.88 -92.71 -0.64 11.73 16 38 H 0.14 1.87 8.14 -2.39 -0.02 1.85 16 39 H 0.10 2.08 8.14 -2.39 -0.02 2.06 16 40 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 41 H 0.13 1.98 8.14 -2.38 -0.02 1.96 16 42 H 0.11 2.63 8.14 -2.39 -0.02 2.61 16 43 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 Total: -1.00 -76.22 345.54 3.04 -73.18 By element: Atomic # 1 Polarization: 25.68 SS G_CDS: 0.35 Total: 26.03 kcal Atomic # 6 Polarization: -4.84 SS G_CDS: 4.88 Total: 0.04 kcal Atomic # 7 Polarization: -116.67 SS G_CDS: -4.18 Total: -120.85 kcal Atomic # 8 Polarization: -27.50 SS G_CDS: -0.05 Total: -27.55 kcal Atomic # 14 Polarization: 47.11 SS G_CDS: 2.03 Total: 49.14 kcal Total: -76.22 3.04 -73.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000975075423.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.670 kcal (2) G-P(sol) polarization free energy of solvation -76.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.447 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.181 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds