Wall clock time and date at job start Tue Mar 31 2020 00:03:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 110.91567 * 2 1 4 4 C 1.54904 * 111.00688 * 236.09541 * 2 1 3 5 5 N 1.47435 * 104.83391 * 204.91696 * 4 2 1 6 6 C 1.36934 * 125.64724 * 204.16628 * 5 4 2 7 7 H 1.08001 * 120.00082 * 359.97438 * 6 5 4 8 8 C 1.38809 * 119.99885 * 179.97438 * 6 5 4 9 9 N 1.31622 * 120.00122 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 120.00256 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.47080 * 59.99432 * 10 8 6 12 12 H 1.48500 * 109.47387 * 179.97438 * 10 8 6 13 13 H 1.48507 * 109.47098 * 300.00151 * 10 8 6 14 14 C 1.47022 * 108.70089 * 24.12919 * 5 4 2 15 15 C 1.54322 * 107.27269 * 358.93984 * 14 5 4 16 16 H 1.09002 * 110.71963 * 219.44477 * 15 14 5 17 17 N 1.46502 * 110.71872 * 96.34682 * 15 14 5 18 18 C 1.34779 * 119.99434 * 88.84348 * 17 15 14 19 19 O 1.21280 * 120.00286 * 0.02562 * 18 17 15 20 20 C 1.50704 * 119.99862 * 179.97438 * 18 17 15 21 21 H 1.09005 * 115.55007 * 325.67140 * 20 18 17 22 22 C 1.53004 * 117.49845 * 111.37764 * 20 18 17 23 23 C 1.52986 * 117.50290 * 180.02562 * 20 18 17 24 24 C 1.52993 * 138.59024 * 121.61315 * 23 20 18 25 25 C 1.53001 * 138.58696 * 23.39990 * 23 20 18 26 26 H 1.08994 * 109.47353 * 296.09460 * 1 2 3 27 27 H 1.08998 * 109.46929 * 56.10492 * 1 2 3 28 28 H 1.09005 * 109.46974 * 176.10375 * 1 2 3 29 29 H 1.09006 * 109.47230 * 183.90230 * 3 2 1 30 30 H 1.08999 * 109.46701 * 303.89699 * 3 2 1 31 31 H 1.09001 * 109.47069 * 63.89861 * 3 2 1 32 32 H 1.08997 * 110.37110 * 86.08075 * 4 2 1 33 33 H 1.09005 * 110.37140 * 323.74975 * 4 2 1 34 34 H 0.96995 * 120.00311 * 179.97438 * 9 8 6 35 35 H 1.09002 * 109.87665 * 239.52284 * 14 5 4 36 36 H 1.08995 * 109.88258 * 118.36229 * 14 5 4 37 37 H 0.96999 * 120.00512 * 268.84499 * 17 15 14 38 38 H 1.08998 * 117.49547 * 214.98034 * 22 20 18 39 39 H 1.08997 * 117.49771 * 0.02562 * 22 20 18 40 40 H 1.08992 * 117.49958 * 336.60098 * 24 23 20 41 41 H 1.09009 * 117.49625 * 121.62451 * 24 23 20 42 42 H 1.09001 * 117.49938 * 238.38736 * 25 23 20 43 43 H 1.09007 * 117.49617 * 23.38515 * 25 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0761 1.4292 0.0000 4 6 2.0852 -0.8066 -1.2002 5 7 3.4272 -1.2431 -0.7732 6 6 4.4645 -1.5654 -1.6070 7 1 4.3340 -1.5100 -2.6776 8 6 5.6838 -1.9632 -1.0761 9 7 5.8431 -2.0302 0.2287 10 14 7.0987 -2.4035 -2.2135 11 1 7.4402 -1.2295 -3.0562 12 1 8.2817 -2.7924 -1.4044 13 1 6.6992 -3.5383 -3.0842 14 6 3.4674 -1.2741 0.6962 15 6 2.0861 -0.8079 1.2023 16 1 2.1921 -0.1699 2.0797 17 7 1.2282 -1.9575 1.5003 18 6 1.2488 -2.5133 2.7279 19 8 1.9771 -2.0615 3.5861 20 6 0.3659 -3.6955 3.0347 21 1 -0.6024 -3.7016 2.5340 22 6 1.0482 -5.0444 3.2706 23 6 0.4344 -4.2809 4.4464 24 6 -0.5046 -4.5494 5.6241 25 6 0.8282 -3.8345 5.8559 26 1 -0.3634 0.4520 0.9228 27 1 -0.3633 0.5731 -0.8530 28 1 -0.3633 -1.0253 -0.0698 29 1 3.1636 1.4026 -0.0699 30 1 1.6705 1.9731 -0.8530 31 1 1.7835 1.9300 0.9229 32 1 2.1561 -0.1721 -2.0836 33 1 1.4520 -1.6705 -1.4023 34 1 6.6950 -2.3085 0.5997 35 1 4.2426 -0.5997 1.0600 36 1 3.6651 -2.2893 1.0402 37 1 0.6455 -2.3186 0.8141 38 1 0.5290 -5.9383 2.9251 39 1 2.1357 -5.0767 3.2044 40 1 -1.4140 -3.9521 5.6890 41 1 -0.5914 -5.5781 5.9742 42 1 1.6181 -4.3928 6.3583 43 1 0.7959 -2.7668 6.0731 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000975075425.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:03:36 Heat of formation + Delta-G solvation = 47.751173 kcal Electronic energy + Delta-G solvation = -22559.669689 eV Core-core repulsion = 19414.529178 eV Total energy + Delta-G solvation = -3145.140512 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -39.89994 -38.49133 -36.91276 -33.80891 -32.97846 -32.40709 -30.67221 -28.14448 -26.84298 -25.61256 -24.29737 -22.82018 -22.37587 -20.56144 -19.84109 -19.21660 -18.37975 -16.85451 -16.59964 -15.79238 -15.00623 -14.89569 -14.59354 -14.39273 -13.98019 -13.84806 -13.58176 -13.24947 -12.62538 -12.27717 -12.05403 -11.95616 -11.65847 -11.62927 -11.46388 -11.33838 -11.04497 -10.95918 -10.74511 -10.37961 -10.24738 -10.14918 -10.06853 -9.96064 -9.93220 -9.85563 -9.61257 -9.29344 -8.59797 -8.35979 -6.79752 -5.66047 -3.01070 2.88449 3.37032 3.42284 3.46437 3.48387 3.81078 3.98218 4.35910 4.52464 4.84707 4.88180 4.98543 5.22509 5.30989 5.33635 5.49326 5.55992 5.57391 5.61144 5.65802 5.68702 5.74577 5.84033 5.94281 5.96134 6.05290 6.06952 6.18580 6.18810 6.23064 6.27622 6.42491 6.61054 6.64048 6.70464 6.81010 7.00567 7.58726 7.69251 7.86533 8.03786 8.29145 8.73639 9.25065 9.85829 10.51578 11.44424 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.016627 B = 0.005400 C = 0.004448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.628172 B = 5183.627987 C = 6294.082684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.090 4.090 3 C -0.126 4.126 4 C 0.144 3.856 5 N -0.603 5.603 6 C -0.231 4.231 7 H 0.077 0.923 8 C -0.006 4.006 9 N -0.919 5.919 10 Si 0.910 3.090 11 H -0.285 1.285 12 H -0.291 1.291 13 H -0.286 1.286 14 C 0.176 3.824 15 C 0.125 3.875 16 H 0.086 0.914 17 N -0.707 5.707 18 C 0.538 3.462 19 O -0.536 6.536 20 C -0.138 4.138 21 H 0.119 0.881 22 C -0.100 4.100 23 C -0.201 4.201 24 C -0.133 4.133 25 C -0.113 4.113 26 H 0.052 0.948 27 H 0.054 0.946 28 H 0.050 0.950 29 H 0.069 0.931 30 H 0.052 0.948 31 H 0.047 0.953 32 H 0.040 0.960 33 H 0.015 0.985 34 H 0.253 0.747 35 H 0.052 0.948 36 H 0.047 0.953 37 H 0.395 0.605 38 H 0.103 0.897 39 H 0.104 0.896 40 H 0.094 0.906 41 H 0.096 0.904 42 H 0.095 0.905 43 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.657 -1.543 5.385 15.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.091 4.091 3 C -0.183 4.183 4 C 0.018 3.982 5 N -0.329 5.329 6 C -0.359 4.359 7 H 0.094 0.906 8 C -0.203 4.203 9 N -0.566 5.566 10 Si 0.741 3.259 11 H -0.212 1.212 12 H -0.216 1.216 13 H -0.213 1.213 14 C 0.051 3.949 15 C 0.020 3.980 16 H 0.104 0.896 17 N -0.357 5.357 18 C 0.324 3.676 19 O -0.412 6.412 20 C -0.160 4.160 21 H 0.137 0.863 22 C -0.137 4.137 23 C -0.201 4.201 24 C -0.170 4.170 25 C -0.149 4.149 26 H 0.071 0.929 27 H 0.073 0.927 28 H 0.069 0.931 29 H 0.088 0.912 30 H 0.071 0.929 31 H 0.066 0.934 32 H 0.058 0.942 33 H 0.033 0.967 34 H 0.063 0.937 35 H 0.070 0.930 36 H 0.066 0.934 37 H 0.229 0.771 38 H 0.122 0.878 39 H 0.122 0.878 40 H 0.112 0.888 41 H 0.114 0.886 42 H 0.114 0.886 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -13.872 -1.273 6.025 15.177 hybrid contribution 0.514 -0.472 -1.082 1.288 sum -13.357 -1.746 4.943 14.349 Atomic orbital electron populations 1.21667 0.94784 1.01067 1.01269 1.22011 0.94407 0.96035 0.96688 1.21597 1.02509 0.93755 1.00461 1.21626 0.87808 0.94495 0.94293 1.44436 1.07609 1.78995 1.01864 1.18978 0.89418 1.38638 0.88870 0.90562 1.24803 0.97797 1.01767 0.95922 1.69959 1.24277 1.53187 1.09168 0.86231 0.82002 0.78226 0.79463 1.21200 1.21642 1.21258 1.21508 0.89725 1.00411 0.83269 1.22451 0.92403 0.86293 0.96867 0.89593 1.45932 1.44185 1.33164 1.12460 1.19528 0.82446 0.83317 0.82319 1.90686 1.40980 1.62763 1.46821 1.21979 1.00786 0.94775 0.98410 0.86311 1.22674 1.00750 0.92899 0.97426 1.21128 1.07222 1.05786 0.85981 1.22739 0.94431 1.01420 0.98372 1.22563 0.97127 1.00978 0.94279 0.92919 0.92699 0.93054 0.91209 0.92915 0.93384 0.94162 0.96734 0.93661 0.92983 0.93441 0.77054 0.87834 0.87770 0.88788 0.88584 0.88647 0.88260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.70 8.22 37.15 0.31 -1.39 16 2 C -0.09 -1.51 0.83 -152.36 -0.13 -1.64 16 3 C -0.13 -2.04 8.57 37.16 0.32 -1.72 16 4 C 0.14 2.87 6.14 -2.53 -0.02 2.86 16 5 N -0.60 -15.16 3.38 -170.07 -0.57 -15.74 16 6 C -0.23 -6.42 10.28 -15.06 -0.15 -6.57 16 7 H 0.08 2.04 7.83 -52.49 -0.41 1.63 16 8 C -0.01 -0.18 5.49 -17.43 -0.10 -0.28 16 9 N -0.92 -27.65 10.31 55.49 0.57 -27.08 16 10 Si 0.91 22.34 29.55 -169.99 -5.02 17.32 16 11 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 12 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 13 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 14 C 0.18 4.39 4.80 -3.06 -0.01 4.38 16 15 C 0.12 2.42 2.54 -66.09 -0.17 2.26 16 16 H 0.09 1.76 7.52 -51.93 -0.39 1.37 16 17 N -0.71 -12.03 4.52 -52.02 -0.24 -12.26 16 18 C 0.54 9.55 7.61 -10.98 -0.08 9.47 16 19 O -0.54 -11.58 15.93 5.56 0.09 -11.50 16 20 C -0.14 -1.90 6.19 -91.77 -0.57 -2.47 16 21 H 0.12 1.30 8.14 -51.93 -0.42 0.88 16 22 C -0.10 -1.30 10.24 -26.71 -0.27 -1.58 16 23 C -0.20 -2.64 5.06 -154.50 -0.78 -3.42 16 24 C -0.13 -1.36 10.53 -26.73 -0.28 -1.64 16 25 C -0.11 -1.43 10.16 -26.73 -0.27 -1.70 16 26 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 27 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 28 H 0.05 0.62 6.44 -51.93 -0.33 0.28 16 29 H 0.07 1.34 7.91 -51.93 -0.41 0.93 16 30 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.04 0.79 8.05 -51.93 -0.42 0.37 16 33 H 0.02 0.29 7.98 -51.93 -0.41 -0.13 16 34 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 35 H 0.05 1.47 7.38 -51.93 -0.38 1.09 16 36 H 0.05 1.36 7.41 -51.93 -0.38 0.97 16 37 H 0.39 5.80 7.03 -40.82 -0.29 5.51 16 38 H 0.10 1.07 8.14 -51.93 -0.42 0.64 16 39 H 0.10 1.56 8.14 -51.93 -0.42 1.13 16 40 H 0.09 0.86 8.14 -51.93 -0.42 0.44 16 41 H 0.10 0.83 8.14 -51.92 -0.42 0.40 16 42 H 0.10 1.13 8.14 -51.93 -0.42 0.71 16 43 H 0.10 1.35 8.14 -51.93 -0.42 0.92 16 LS Contribution 347.10 15.07 5.23 5.23 Total: -1.00 -32.55 347.10 -9.37 -41.92 By element: Atomic # 1 Polarization: 12.77 SS G_CDS: -7.22 Total: 5.55 kcal Atomic # 6 Polarization: -1.23 SS G_CDS: -2.21 Total: -3.45 kcal Atomic # 7 Polarization: -54.84 SS G_CDS: -0.24 Total: -55.08 kcal Atomic # 8 Polarization: -11.58 SS G_CDS: 0.09 Total: -11.50 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -32.55 -9.37 -41.92 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000975075425.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.671 kcal (2) G-P(sol) polarization free energy of solvation -32.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.124 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.920 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds