Wall clock time and date at job start Tue Mar 31 2020 00:03:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53001 * 110.91567 * 2 1 4 4 C 1.54904 * 111.00688 * 236.09541 * 2 1 3 5 5 N 1.47435 * 104.83391 * 204.91696 * 4 2 1 6 6 C 1.36934 * 125.64724 * 204.16628 * 5 4 2 7 7 H 1.08001 * 120.00082 * 359.97438 * 6 5 4 8 8 C 1.38809 * 119.99885 * 179.97438 * 6 5 4 9 9 N 1.31622 * 120.00122 * 359.97438 * 8 6 5 10 10 Si 1.86801 * 120.00256 * 179.97438 * 8 6 5 11 11 H 1.48497 * 109.47080 * 59.99432 * 10 8 6 12 12 H 1.48500 * 109.47387 * 179.97438 * 10 8 6 13 13 H 1.48507 * 109.47098 * 300.00151 * 10 8 6 14 14 C 1.47022 * 108.70089 * 24.12919 * 5 4 2 15 15 C 1.54322 * 107.27269 * 358.93984 * 14 5 4 16 16 H 1.09002 * 110.71963 * 219.44477 * 15 14 5 17 17 N 1.46502 * 110.71872 * 96.34682 * 15 14 5 18 18 C 1.34779 * 119.99434 * 88.84348 * 17 15 14 19 19 O 1.21280 * 120.00286 * 0.02562 * 18 17 15 20 20 C 1.50704 * 119.99862 * 179.97438 * 18 17 15 21 21 H 1.09005 * 115.55007 * 325.67140 * 20 18 17 22 22 C 1.53004 * 117.49845 * 111.37764 * 20 18 17 23 23 C 1.52986 * 117.50290 * 180.02562 * 20 18 17 24 24 C 1.52993 * 138.59024 * 121.61315 * 23 20 18 25 25 C 1.53001 * 138.58696 * 23.39990 * 23 20 18 26 26 H 1.08994 * 109.47353 * 296.09460 * 1 2 3 27 27 H 1.08998 * 109.46929 * 56.10492 * 1 2 3 28 28 H 1.09005 * 109.46974 * 176.10375 * 1 2 3 29 29 H 1.09006 * 109.47230 * 183.90230 * 3 2 1 30 30 H 1.08999 * 109.46701 * 303.89699 * 3 2 1 31 31 H 1.09001 * 109.47069 * 63.89861 * 3 2 1 32 32 H 1.08997 * 110.37110 * 86.08075 * 4 2 1 33 33 H 1.09005 * 110.37140 * 323.74975 * 4 2 1 34 34 H 0.96995 * 120.00311 * 179.97438 * 9 8 6 35 35 H 1.09002 * 109.87665 * 239.52284 * 14 5 4 36 36 H 1.08995 * 109.88258 * 118.36229 * 14 5 4 37 37 H 0.96999 * 120.00512 * 268.84499 * 17 15 14 38 38 H 1.08998 * 117.49547 * 214.98034 * 22 20 18 39 39 H 1.08997 * 117.49771 * 0.02562 * 22 20 18 40 40 H 1.08992 * 117.49958 * 336.60098 * 24 23 20 41 41 H 1.09009 * 117.49625 * 121.62451 * 24 23 20 42 42 H 1.09001 * 117.49938 * 238.38736 * 25 23 20 43 43 H 1.09007 * 117.49617 * 23.38515 * 25 23 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0761 1.4292 0.0000 4 6 2.0852 -0.8066 -1.2002 5 7 3.4272 -1.2431 -0.7732 6 6 4.4645 -1.5654 -1.6070 7 1 4.3340 -1.5100 -2.6776 8 6 5.6838 -1.9632 -1.0761 9 7 5.8431 -2.0302 0.2287 10 14 7.0987 -2.4035 -2.2135 11 1 7.4402 -1.2295 -3.0562 12 1 8.2817 -2.7924 -1.4044 13 1 6.6992 -3.5383 -3.0842 14 6 3.4674 -1.2741 0.6962 15 6 2.0861 -0.8079 1.2023 16 1 2.1921 -0.1699 2.0797 17 7 1.2282 -1.9575 1.5003 18 6 1.2488 -2.5133 2.7279 19 8 1.9771 -2.0615 3.5861 20 6 0.3659 -3.6955 3.0347 21 1 -0.6024 -3.7016 2.5340 22 6 1.0482 -5.0444 3.2706 23 6 0.4344 -4.2809 4.4464 24 6 -0.5046 -4.5494 5.6241 25 6 0.8282 -3.8345 5.8559 26 1 -0.3634 0.4520 0.9228 27 1 -0.3633 0.5731 -0.8530 28 1 -0.3633 -1.0253 -0.0698 29 1 3.1636 1.4026 -0.0699 30 1 1.6705 1.9731 -0.8530 31 1 1.7835 1.9300 0.9229 32 1 2.1561 -0.1721 -2.0836 33 1 1.4520 -1.6705 -1.4023 34 1 6.6950 -2.3085 0.5997 35 1 4.2426 -0.5997 1.0600 36 1 3.6651 -2.2893 1.0402 37 1 0.6455 -2.3186 0.8141 38 1 0.5290 -5.9383 2.9251 39 1 2.1357 -5.0767 3.2044 40 1 -1.4140 -3.9521 5.6890 41 1 -0.5914 -5.5781 5.9742 42 1 1.6181 -4.3928 6.3583 43 1 0.7959 -2.7668 6.0731 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000975075425.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:03:36 Heat of formation + Delta-G solvation = 27.222289 kcal Electronic energy + Delta-G solvation = -22560.559889 eV Core-core repulsion = 19414.529178 eV Total energy + Delta-G solvation = -3146.030711 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.34601 -39.88665 -38.17740 -35.68199 -34.48776 -33.45663 -32.61816 -29.88369 -28.11393 -27.43990 -25.81331 -24.34733 -23.26117 -22.22690 -21.36185 -20.48708 -19.70441 -18.69243 -18.10788 -17.30347 -16.65329 -16.03430 -15.88242 -15.73487 -15.72594 -15.33242 -15.09147 -14.78797 -14.03584 -13.82301 -13.54717 -13.41501 -13.14849 -12.97601 -12.84911 -12.66169 -12.62883 -12.58522 -12.34332 -12.17881 -11.86463 -11.75065 -11.52825 -11.32653 -11.16333 -11.06924 -10.92412 -10.79673 -10.63716 -9.95758 -8.90176 -7.84047 -5.21191 1.42937 1.46770 1.53243 1.54234 2.10542 2.48688 2.76547 2.91031 3.33965 3.35806 3.49264 3.71565 3.81967 3.88058 3.96964 4.07054 4.12768 4.39723 4.49736 4.52560 4.61565 4.71672 4.76432 4.77888 4.80417 4.84557 4.88288 4.95003 5.02197 5.03687 5.05524 5.13713 5.16352 5.28949 5.32091 5.35276 5.44935 5.55878 5.71078 5.76366 6.16728 6.64525 7.07266 7.34631 7.77376 8.41854 9.25074 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.016627 B = 0.005400 C = 0.004448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1683.628172 B = 5183.627987 C = 6294.082684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.075 4.075 3 C -0.124 4.124 4 C 0.138 3.862 5 N -0.620 5.620 6 C -0.238 4.238 7 H 0.088 0.912 8 C -0.070 4.070 9 N -0.956 5.956 10 Si 0.978 3.022 11 H -0.274 1.274 12 H -0.300 1.300 13 H -0.274 1.274 14 C 0.195 3.805 15 C 0.138 3.862 16 H 0.072 0.928 17 N -0.696 5.696 18 C 0.530 3.470 19 O -0.584 6.584 20 C -0.139 4.139 21 H 0.158 0.842 22 C -0.099 4.099 23 C -0.222 4.222 24 C -0.092 4.092 25 C -0.139 4.139 26 H 0.063 0.937 27 H 0.078 0.922 28 H 0.065 0.935 29 H 0.028 0.972 30 H 0.079 0.921 31 H 0.064 0.936 32 H 0.048 0.952 33 H 0.033 0.967 34 H 0.243 0.757 35 H 0.001 0.999 36 H -0.002 1.002 37 H 0.410 0.590 38 H 0.139 0.861 39 H 0.071 0.929 40 H 0.111 0.889 41 H 0.120 0.880 42 H 0.095 0.905 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.189 -2.048 4.080 18.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.076 4.076 3 C -0.181 4.181 4 C 0.014 3.986 5 N -0.346 5.346 6 C -0.367 4.367 7 H 0.106 0.894 8 C -0.262 4.262 9 N -0.605 5.605 10 Si 0.806 3.194 11 H -0.200 1.200 12 H -0.226 1.226 13 H -0.200 1.200 14 C 0.069 3.931 15 C 0.031 3.969 16 H 0.090 0.910 17 N -0.347 5.347 18 C 0.318 3.682 19 O -0.464 6.464 20 C -0.160 4.160 21 H 0.176 0.824 22 C -0.136 4.136 23 C -0.223 4.223 24 C -0.129 4.129 25 C -0.176 4.176 26 H 0.082 0.918 27 H 0.097 0.903 28 H 0.084 0.916 29 H 0.047 0.953 30 H 0.098 0.902 31 H 0.083 0.917 32 H 0.067 0.933 33 H 0.050 0.950 34 H 0.052 0.948 35 H 0.019 0.981 36 H 0.016 0.984 37 H 0.248 0.752 38 H 0.157 0.843 39 H 0.090 0.910 40 H 0.130 0.870 41 H 0.138 0.862 42 H 0.113 0.887 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -17.471 -1.778 4.667 18.171 hybrid contribution 1.644 -0.284 -0.668 1.797 sum -15.827 -2.063 3.999 16.454 Atomic orbital electron populations 1.21639 0.90668 1.02710 1.02987 1.21990 0.97405 0.95166 0.93048 1.21594 0.99920 0.94016 1.02600 1.21900 0.85445 0.95493 0.95791 1.44686 1.09340 1.78922 1.01699 1.19467 0.90249 1.37212 0.89817 0.89425 1.25693 1.00667 1.02621 0.97249 1.70245 1.24142 1.54878 1.11238 0.85153 0.78310 0.78396 0.77500 1.20017 1.22646 1.19995 1.21051 0.91960 0.96397 0.83693 1.22038 0.90278 0.87194 0.97345 0.90981 1.45777 1.43547 1.32475 1.12917 1.20395 0.82188 0.83917 0.81734 1.90665 1.43133 1.64365 1.48283 1.22018 1.01389 0.92832 0.99749 0.82422 1.22705 0.99252 0.93804 0.97837 1.21400 1.09221 1.05588 0.86056 1.22874 0.93299 1.02464 0.94240 1.22607 0.99685 1.00483 0.94820 0.91823 0.90279 0.91614 0.95299 0.90169 0.91739 0.93325 0.94976 0.94797 0.98063 0.98380 0.75240 0.84340 0.91023 0.87037 0.86169 0.88699 0.90011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.67 8.22 71.98 0.59 -2.08 16 2 C -0.07 -2.39 0.83 -50.79 -0.04 -2.43 16 3 C -0.12 -3.87 8.57 71.98 0.62 -3.25 16 4 C 0.14 5.31 6.14 86.85 0.53 5.85 16 5 N -0.62 -32.00 3.38 -691.98 -2.34 -34.34 16 6 C -0.24 -13.52 10.28 84.03 0.86 -12.65 16 7 H 0.09 4.65 7.83 -2.91 -0.02 4.63 16 8 C -0.07 -4.11 5.49 84.86 0.47 -3.64 16 9 N -0.96 -61.15 10.31 21.65 0.22 -60.93 16 10 Si 0.98 47.12 29.55 68.60 2.03 49.15 16 11 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 12 H -0.30 -14.77 7.11 99.48 0.71 -14.07 16 13 H -0.27 -12.56 7.11 99.48 0.71 -11.86 16 14 C 0.20 10.37 4.80 86.73 0.42 10.79 16 15 C 0.14 5.47 2.54 46.18 0.12 5.59 16 16 H 0.07 3.08 7.52 -2.39 -0.02 3.07 16 17 N -0.70 -23.41 4.52 -436.89 -1.97 -25.38 16 18 C 0.53 19.03 7.61 87.66 0.67 19.70 16 19 O -0.58 -26.65 15.93 -3.03 -0.05 -26.70 16 20 C -0.14 -3.60 6.19 -11.54 -0.07 -3.67 16 21 H 0.16 2.81 8.14 -2.38 -0.02 2.79 16 22 C -0.10 -2.47 10.24 30.61 0.31 -2.15 16 23 C -0.22 -5.53 5.06 -52.17 -0.26 -5.79 16 24 C -0.09 -1.61 10.53 30.59 0.32 -1.29 16 25 C -0.14 -3.50 10.16 30.60 0.31 -3.19 16 26 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 27 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.06 1.27 6.44 -2.38 -0.02 1.25 16 29 H 0.03 1.12 7.91 -2.38 -0.02 1.10 16 30 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 31 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 32 H 0.05 1.80 8.05 -2.39 -0.02 1.78 16 33 H 0.03 1.16 7.98 -2.38 -0.02 1.14 16 34 H 0.24 15.31 8.31 -92.71 -0.77 14.54 16 35 H 0.00 0.08 7.38 -2.39 -0.02 0.06 16 36 H 0.00 -0.12 7.41 -2.39 -0.02 -0.14 16 37 H 0.41 11.14 7.03 -92.71 -0.65 10.49 16 38 H 0.14 2.44 8.14 -2.39 -0.02 2.42 16 39 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 40 H 0.11 1.60 8.14 -2.39 -0.02 1.58 16 41 H 0.12 1.56 8.14 -2.38 -0.02 1.54 16 42 H 0.09 2.31 8.14 -2.39 -0.02 2.30 16 43 H 0.08 2.31 8.14 -2.38 -0.02 2.29 16 Total: -1.00 -77.75 347.10 3.06 -74.68 By element: Atomic # 1 Polarization: 21.42 SS G_CDS: 0.34 Total: 21.76 kcal Atomic # 6 Polarization: -3.08 SS G_CDS: 4.84 Total: 1.76 kcal Atomic # 7 Polarization: -116.56 SS G_CDS: -4.09 Total: -120.65 kcal Atomic # 8 Polarization: -26.65 SS G_CDS: -0.05 Total: -26.70 kcal Atomic # 14 Polarization: 47.12 SS G_CDS: 2.03 Total: 49.15 kcal Total: -77.75 3.06 -74.68 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000975075425.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.906 kcal (2) G-P(sol) polarization free energy of solvation -77.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.684 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds