Wall clock time and date at job start Tue Mar 31 2020 00:58:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 C 1.32994 * 119.99661 * 2 1 4 4 C 1.50700 * 119.99709 * 179.97438 * 3 2 1 5 5 C 1.47103 * 120.00225 * 0.02562 * 3 2 1 6 6 O 1.21615 * 119.99830 * 359.97438 * 5 3 2 7 7 N 1.34777 * 119.99794 * 179.97438 * 5 3 2 8 8 C 1.47677 * 134.45031 * 179.97438 * 7 5 3 9 9 C 1.53448 * 85.96874 * 155.69495 * 8 7 5 10 10 C 1.47664 * 134.45778 * 359.97309 * 7 5 3 11 11 C 1.52635 * 113.69771 * 268.84035 * 9 8 7 12 12 C 1.53181 * 109.36536 * 171.35280 * 11 9 8 13 13 C 1.53143 * 109.36136 * 59.05383 * 12 11 9 14 14 N 1.46899 * 109.07466 * 303.52571 * 13 12 11 15 15 C 1.36930 * 120.68844 * 235.34539 * 14 13 12 16 16 H 1.07999 * 120.00603 * 152.33935 * 15 14 13 17 17 C 1.38820 * 120.00093 * 332.34187 * 15 14 13 18 18 N 1.31618 * 120.00104 * 159.29538 * 17 15 14 19 19 Si 1.86803 * 119.99750 * 339.30064 * 17 15 14 20 20 H 1.48494 * 109.47131 * 93.74525 * 19 17 15 21 21 H 1.48497 * 109.47039 * 213.74832 * 19 17 15 22 22 H 1.48504 * 109.46991 * 333.74893 * 19 17 15 23 23 C 1.47110 * 118.62458 * 55.36141 * 14 13 12 24 24 H 1.08999 * 109.47066 * 299.99594 * 1 2 3 25 25 H 1.09000 * 109.46878 * 60.00384 * 1 2 3 26 26 H 1.08998 * 109.46987 * 179.97438 * 1 2 3 27 27 H 1.07995 * 119.99785 * 180.02562 * 2 1 3 28 28 H 1.08999 * 109.47546 * 270.00077 * 4 3 2 29 29 H 1.08998 * 109.47107 * 30.00642 * 4 3 2 30 30 H 1.09001 * 109.46830 * 150.00057 * 4 3 2 31 31 H 1.09000 * 113.79512 * 41.42618 * 8 7 5 32 32 H 1.09000 * 113.79196 * 269.95387 * 8 7 5 33 33 H 1.08994 * 113.79646 * 90.04059 * 10 7 5 34 34 H 1.09009 * 113.79340 * 318.57119 * 10 7 5 35 35 H 1.08994 * 109.48843 * 51.37864 * 11 9 8 36 36 H 1.09006 * 109.48910 * 291.31545 * 11 9 8 37 37 H 1.09001 * 109.48877 * 299.08932 * 12 11 9 38 38 H 1.09000 * 109.48902 * 179.02571 * 12 11 9 39 39 H 1.09005 * 109.53607 * 63.39859 * 13 12 11 40 40 H 1.08998 * 109.54218 * 183.56059 * 13 12 11 41 41 H 0.96998 * 119.99495 * 180.02562 * 18 17 15 42 42 H 1.09002 * 109.63607 * 68.32748 * 23 14 13 43 43 H 1.08999 * 109.63705 * 188.93032 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1720 1.1518 0.0000 4 6 3.6790 1.1518 0.0006 5 6 1.4365 2.4257 0.0006 6 8 0.2203 2.4257 0.0006 7 7 2.1104 3.5929 0.0011 8 6 1.7145 5.0157 0.0013 9 6 3.0871 5.2855 0.6319 10 6 3.5403 3.9616 0.0018 11 6 3.0755 5.2666 2.1581 12 6 4.5150 5.3295 2.6778 13 6 5.1842 6.6085 2.1661 14 7 5.1123 6.6340 0.6991 15 6 6.2478 6.7699 -0.0540 16 1 6.2861 6.3597 -1.0523 17 6 7.3500 7.4348 0.4658 18 7 8.5446 7.2296 -0.0472 19 14 7.1376 8.6207 1.8934 20 1 7.3782 7.9045 3.1718 21 1 8.1096 9.7353 1.7598 22 1 5.7559 9.1649 1.8835 23 6 3.7950 6.5109 0.0558 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 2.0470 -0.9353 -0.0004 28 1 4.0420 1.1520 1.0283 29 1 4.0425 0.2618 -0.5130 30 1 4.0425 2.0417 -0.5133 31 1 0.8759 5.2387 0.6609 32 1 1.5978 5.4397 -0.9961 33 1 3.9663 4.0723 -0.9953 34 1 4.1525 3.3471 0.6619 35 1 2.6027 4.3486 2.5067 36 1 2.5174 6.1267 2.5282 37 1 5.0689 4.4614 2.3205 38 1 4.5083 5.3336 3.7678 39 1 4.6666 7.4780 2.5715 40 1 6.2274 6.6255 2.4815 41 1 9.3147 7.6940 0.3163 42 1 3.2038 7.4041 0.2578 43 1 3.9227 6.3882 -1.0197 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000981699256.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:58:36 Heat of formation + Delta-G solvation = 44.174538 kcal Electronic energy + Delta-G solvation = -22783.588706 eV Core-core repulsion = 19638.293099 eV Total energy + Delta-G solvation = -3145.295606 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.77386 -38.70349 -36.17519 -34.94213 -32.75171 -31.10500 -30.91485 -29.60392 -26.59579 -26.17925 -25.41023 -24.51016 -22.15111 -22.09070 -20.74860 -18.37100 -18.12464 -16.75845 -16.29680 -15.80875 -15.36188 -15.24438 -14.50872 -14.29767 -14.01218 -13.69738 -13.44978 -13.25815 -13.05119 -12.98187 -12.77035 -12.43342 -12.36885 -12.11864 -11.96344 -11.76328 -11.52171 -11.51014 -11.48419 -10.86898 -10.67473 -10.38872 -10.05654 -9.96390 -9.68959 -9.45412 -9.36570 -9.15328 -8.64402 -8.41209 -7.01026 -5.99238 -3.35408 1.38784 2.98769 3.29479 3.34658 3.46675 3.49055 4.39298 4.49826 4.57990 4.82528 4.96131 5.02151 5.13914 5.17018 5.29804 5.36272 5.53063 5.54393 5.58583 5.61837 5.64162 5.69683 5.77280 5.79631 5.79987 5.85820 5.97254 6.00906 6.17360 6.20828 6.27422 6.31318 6.41936 6.44249 6.53129 6.56036 6.60024 6.67949 6.87447 7.86706 7.91030 8.27641 8.30166 8.88787 9.67594 10.05416 11.16510 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.031605 B = 0.004601 C = 0.004405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.730830 B = 6084.803729 C = 6355.493901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.082 4.082 3 C -0.182 4.182 4 C -0.127 4.127 5 C 0.568 3.432 6 O -0.550 6.550 7 N -0.636 5.636 8 C 0.116 3.884 9 C -0.106 4.106 10 C 0.118 3.882 11 C -0.083 4.083 12 C -0.134 4.134 13 C 0.126 3.874 14 N -0.603 5.603 15 C -0.261 4.261 16 H 0.086 0.914 17 C 0.026 3.974 18 N -0.907 5.907 19 Si 0.882 3.118 20 H -0.289 1.289 21 H -0.304 1.304 22 H -0.270 1.270 23 C 0.164 3.836 24 H 0.078 0.922 25 H 0.078 0.922 26 H 0.048 0.952 27 H 0.122 0.878 28 H 0.070 0.930 29 H 0.065 0.935 30 H 0.079 0.921 31 H 0.077 0.923 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.087 0.913 35 H 0.054 0.946 36 H 0.062 0.938 37 H 0.064 0.936 38 H 0.055 0.945 39 H 0.025 0.975 40 H 0.071 0.929 41 H 0.263 0.737 42 H 0.029 0.971 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.685 -10.211 2.074 15.656 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.102 4.102 3 C -0.185 4.185 4 C -0.183 4.183 5 C 0.361 3.639 6 O -0.431 6.431 7 N -0.371 5.371 8 C -0.007 4.007 9 C -0.109 4.109 10 C -0.004 4.004 11 C -0.121 4.121 12 C -0.173 4.173 13 C 0.000 4.000 14 N -0.326 5.326 15 C -0.389 4.389 16 H 0.103 0.897 17 C -0.174 4.174 18 N -0.550 5.550 19 Si 0.713 3.287 20 H -0.217 1.217 21 H -0.232 1.232 22 H -0.195 1.195 23 C 0.038 3.962 24 H 0.097 0.903 25 H 0.097 0.903 26 H 0.067 0.933 27 H 0.140 0.860 28 H 0.089 0.911 29 H 0.084 0.916 30 H 0.098 0.902 31 H 0.096 0.904 32 H 0.103 0.897 33 H 0.107 0.893 34 H 0.105 0.895 35 H 0.072 0.928 36 H 0.080 0.920 37 H 0.083 0.917 38 H 0.073 0.927 39 H 0.043 0.957 40 H 0.090 0.910 41 H 0.072 0.928 42 H 0.047 0.953 43 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -12.225 -10.334 2.044 16.138 hybrid contribution 0.181 0.638 0.784 1.027 sum -12.045 -9.696 2.828 15.719 Atomic orbital electron populations 1.20983 0.91899 1.00560 1.04020 1.23566 0.97089 0.96569 0.92945 1.21471 0.96586 0.92876 1.07578 1.21146 0.90906 1.03654 1.02614 1.18100 0.86513 0.82968 0.76322 1.90750 1.13505 1.87093 1.51721 1.50037 1.09683 1.05015 1.72338 1.23198 0.97958 0.78822 1.00744 1.22622 0.94373 0.97238 0.96650 1.23417 0.82096 0.93700 1.01177 1.21105 0.97436 1.01047 0.92481 1.22017 0.95564 1.00813 0.98939 1.21308 0.99561 0.94254 0.84857 1.44328 1.02467 1.85374 1.00466 1.18876 0.89176 1.30646 1.00173 0.89674 1.25266 0.95381 0.98666 0.98049 1.69832 0.98055 1.43373 1.43742 0.86958 0.77506 0.81939 0.82319 1.21697 1.23250 1.19513 1.20818 0.86370 0.92617 0.96426 0.90347 0.90338 0.93281 0.85993 0.91126 0.91599 0.90197 0.90432 0.89730 0.89257 0.89459 0.92762 0.91980 0.91713 0.92663 0.95718 0.91048 0.92752 0.95310 0.91457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.35 8.45 36.01 0.30 -1.04 16 2 C -0.08 -0.91 9.95 -36.12 -0.36 -1.27 16 3 C -0.18 -2.33 6.00 -102.85 -0.62 -2.94 16 4 C -0.13 -1.40 8.57 36.01 0.31 -1.09 16 5 C 0.57 8.76 7.95 -12.66 -0.10 8.66 16 6 O -0.55 -9.71 13.80 5.26 0.07 -9.64 16 7 N -0.64 -9.22 3.45 -181.87 -0.63 -9.85 16 8 C 0.12 1.57 7.97 -3.17 -0.03 1.55 16 9 C -0.11 -1.57 0.87 -154.42 -0.13 -1.71 16 10 C 0.12 1.68 5.17 -3.17 -0.02 1.66 16 11 C -0.08 -1.22 5.02 -26.82 -0.13 -1.36 16 12 C -0.13 -2.20 6.01 -26.56 -0.16 -2.36 16 13 C 0.13 2.56 4.17 -3.75 -0.02 2.55 16 14 N -0.60 -13.15 2.77 -172.46 -0.48 -13.63 16 15 C -0.26 -6.81 10.05 -15.06 -0.15 -6.96 16 16 H 0.09 2.37 8.06 -52.49 -0.42 1.94 16 17 C 0.03 0.71 5.24 -17.43 -0.09 0.61 16 18 N -0.91 -26.83 13.97 55.49 0.78 -26.06 16 19 Si 0.88 21.63 24.38 -169.99 -4.14 17.48 16 20 H -0.29 -6.86 6.64 56.52 0.38 -6.49 16 21 H -0.30 -7.67 7.11 56.52 0.40 -7.27 16 22 H -0.27 -6.50 6.63 56.52 0.37 -6.13 16 23 C 0.16 2.89 5.70 -3.82 -0.02 2.87 16 24 H 0.08 1.02 7.22 -51.93 -0.37 0.64 16 25 H 0.08 1.01 7.22 -51.93 -0.37 0.64 16 26 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.12 1.03 8.06 -52.49 -0.42 0.60 16 28 H 0.07 0.75 8.06 -51.93 -0.42 0.33 16 29 H 0.07 0.62 8.07 -51.93 -0.42 0.20 16 30 H 0.08 0.95 4.79 -51.93 -0.25 0.70 16 31 H 0.08 1.04 8.09 -51.93 -0.42 0.62 16 32 H 0.08 1.06 8.09 -51.93 -0.42 0.64 16 33 H 0.09 1.28 7.90 -51.93 -0.41 0.87 16 34 H 0.09 1.23 5.62 -51.92 -0.29 0.94 16 35 H 0.05 0.77 8.02 -51.93 -0.42 0.36 16 36 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.06 1.09 7.38 -51.93 -0.38 0.71 16 38 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 39 H 0.02 0.50 7.18 -51.93 -0.37 0.13 16 40 H 0.07 1.62 4.39 -51.93 -0.23 1.39 16 41 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 42 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 43 H 0.07 1.17 7.78 -51.93 -0.40 0.77 16 LS Contribution 326.66 15.07 4.92 4.92 Total: -1.00 -30.38 326.66 -7.60 -37.98 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: -6.91 Total: -0.39 kcal Atomic # 6 Polarization: 0.38 SS G_CDS: -1.21 Total: -0.83 kcal Atomic # 7 Polarization: -49.20 SS G_CDS: -0.33 Total: -49.53 kcal Atomic # 8 Polarization: -9.71 SS G_CDS: 0.07 Total: -9.64 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -4.14 Total: 17.48 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -30.38 -7.60 -37.98 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981699256.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.158 kcal (2) G-P(sol) polarization free energy of solvation -30.383 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.983 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds