Wall clock time and date at job start Tue Mar 31 2020 00:58:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50710 * 1 3 3 C 1.32994 * 119.99661 * 2 1 4 4 C 1.50700 * 119.99709 * 179.97438 * 3 2 1 5 5 C 1.47103 * 120.00225 * 0.02562 * 3 2 1 6 6 O 1.21615 * 119.99830 * 359.97438 * 5 3 2 7 7 N 1.34777 * 119.99794 * 179.97438 * 5 3 2 8 8 C 1.47677 * 134.45031 * 179.97438 * 7 5 3 9 9 C 1.53448 * 85.96874 * 155.69495 * 8 7 5 10 10 C 1.47664 * 134.45778 * 359.97309 * 7 5 3 11 11 C 1.52635 * 113.69771 * 268.84035 * 9 8 7 12 12 C 1.53181 * 109.36536 * 171.35280 * 11 9 8 13 13 C 1.53143 * 109.36136 * 59.05383 * 12 11 9 14 14 N 1.46899 * 109.07466 * 303.52571 * 13 12 11 15 15 C 1.36930 * 120.68844 * 235.34539 * 14 13 12 16 16 H 1.07999 * 120.00603 * 152.33935 * 15 14 13 17 17 C 1.38820 * 120.00093 * 332.34187 * 15 14 13 18 18 N 1.31618 * 120.00104 * 159.29538 * 17 15 14 19 19 Si 1.86803 * 119.99750 * 339.30064 * 17 15 14 20 20 H 1.48494 * 109.47131 * 93.74525 * 19 17 15 21 21 H 1.48497 * 109.47039 * 213.74832 * 19 17 15 22 22 H 1.48504 * 109.46991 * 333.74893 * 19 17 15 23 23 C 1.47110 * 118.62458 * 55.36141 * 14 13 12 24 24 H 1.08999 * 109.47066 * 299.99594 * 1 2 3 25 25 H 1.09000 * 109.46878 * 60.00384 * 1 2 3 26 26 H 1.08998 * 109.46987 * 179.97438 * 1 2 3 27 27 H 1.07995 * 119.99785 * 180.02562 * 2 1 3 28 28 H 1.08999 * 109.47546 * 270.00077 * 4 3 2 29 29 H 1.08998 * 109.47107 * 30.00642 * 4 3 2 30 30 H 1.09001 * 109.46830 * 150.00057 * 4 3 2 31 31 H 1.09000 * 113.79512 * 41.42618 * 8 7 5 32 32 H 1.09000 * 113.79196 * 269.95387 * 8 7 5 33 33 H 1.08994 * 113.79646 * 90.04059 * 10 7 5 34 34 H 1.09009 * 113.79340 * 318.57119 * 10 7 5 35 35 H 1.08994 * 109.48843 * 51.37864 * 11 9 8 36 36 H 1.09006 * 109.48910 * 291.31545 * 11 9 8 37 37 H 1.09001 * 109.48877 * 299.08932 * 12 11 9 38 38 H 1.09000 * 109.48902 * 179.02571 * 12 11 9 39 39 H 1.09005 * 109.53607 * 63.39859 * 13 12 11 40 40 H 1.08998 * 109.54218 * 183.56059 * 13 12 11 41 41 H 0.96998 * 119.99495 * 180.02562 * 18 17 15 42 42 H 1.09002 * 109.63607 * 68.32748 * 23 14 13 43 43 H 1.08999 * 109.63705 * 188.93032 * 23 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1720 1.1518 0.0000 4 6 3.6790 1.1518 0.0006 5 6 1.4365 2.4257 0.0006 6 8 0.2203 2.4257 0.0006 7 7 2.1104 3.5929 0.0011 8 6 1.7145 5.0157 0.0013 9 6 3.0871 5.2855 0.6319 10 6 3.5403 3.9616 0.0018 11 6 3.0755 5.2666 2.1581 12 6 4.5150 5.3295 2.6778 13 6 5.1842 6.6085 2.1661 14 7 5.1123 6.6340 0.6991 15 6 6.2478 6.7699 -0.0540 16 1 6.2861 6.3597 -1.0523 17 6 7.3500 7.4348 0.4658 18 7 8.5446 7.2296 -0.0472 19 14 7.1376 8.6207 1.8934 20 1 7.3782 7.9045 3.1718 21 1 8.1096 9.7353 1.7598 22 1 5.7559 9.1649 1.8835 23 6 3.7950 6.5109 0.0558 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 2.0470 -0.9353 -0.0004 28 1 4.0420 1.1520 1.0283 29 1 4.0425 0.2618 -0.5130 30 1 4.0425 2.0417 -0.5133 31 1 0.8759 5.2387 0.6609 32 1 1.5978 5.4397 -0.9961 33 1 3.9663 4.0723 -0.9953 34 1 4.1525 3.3471 0.6619 35 1 2.6027 4.3486 2.5067 36 1 2.5174 6.1267 2.5282 37 1 5.0689 4.4614 2.3205 38 1 4.5083 5.3336 3.7678 39 1 4.6666 7.4780 2.5715 40 1 6.2274 6.6255 2.4815 41 1 9.3147 7.6940 0.3163 42 1 3.2038 7.4041 0.2578 43 1 3.9227 6.3882 -1.0197 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000981699256.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:58:35 Heat of formation + Delta-G solvation = 25.711383 kcal Electronic energy + Delta-G solvation = -22784.389328 eV Core-core repulsion = 19638.293099 eV Total energy + Delta-G solvation = -3146.096229 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.96325 -39.91812 -37.68627 -35.93322 -34.49356 -32.66363 -32.26218 -30.70029 -27.84990 -27.32991 -27.13585 -25.46343 -23.74118 -23.35495 -22.08358 -19.56269 -19.30808 -18.65386 -17.47102 -17.21892 -16.94806 -16.33446 -15.69625 -15.57012 -15.38050 -15.18858 -14.82145 -14.62498 -14.29230 -14.04430 -13.94861 -13.76126 -13.48479 -13.44704 -13.30797 -13.10611 -12.95488 -12.71451 -12.53218 -12.40700 -12.17420 -11.97134 -11.61635 -11.46281 -11.31023 -11.04869 -10.67175 -10.44123 -10.13371 -9.53287 -8.84880 -8.10770 -5.41428 0.42283 1.34171 1.46369 1.54218 1.87831 2.24744 2.46848 3.05975 3.24304 3.51355 3.56603 3.81134 3.94427 3.97000 4.22995 4.25053 4.34653 4.36225 4.43503 4.52945 4.57595 4.63568 4.68500 4.73956 4.78700 4.81761 4.85368 4.87029 4.90912 5.02349 5.04384 5.09558 5.14083 5.20662 5.24525 5.37158 5.49490 5.51054 5.67021 5.92611 6.19175 6.72481 6.97201 7.15412 7.68379 8.09543 9.08876 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.031605 B = 0.004601 C = 0.004405 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.730830 B = 6084.803729 C = 6355.493901 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.064 4.064 3 C -0.206 4.206 4 C -0.121 4.121 5 C 0.559 3.441 6 O -0.580 6.580 7 N -0.636 5.636 8 C 0.119 3.881 9 C -0.101 4.101 10 C 0.123 3.877 11 C -0.076 4.076 12 C -0.125 4.125 13 C 0.120 3.880 14 N -0.615 5.615 15 C -0.239 4.239 16 H 0.058 0.942 17 C -0.033 4.033 18 N -0.957 5.957 19 Si 0.941 3.059 20 H -0.278 1.278 21 H -0.317 1.317 22 H -0.260 1.260 23 C 0.163 3.837 24 H 0.060 0.940 25 H 0.060 0.940 26 H 0.077 0.923 27 H 0.156 0.844 28 H 0.073 0.927 29 H 0.084 0.916 30 H 0.067 0.933 31 H 0.084 0.916 32 H 0.095 0.905 33 H 0.085 0.915 34 H 0.090 0.910 35 H 0.064 0.936 36 H 0.073 0.927 37 H 0.057 0.943 38 H 0.079 0.921 39 H 0.032 0.968 40 H 0.047 0.953 41 H 0.259 0.741 42 H 0.040 0.960 43 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.304 -11.390 3.299 17.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.084 4.084 3 C -0.208 4.208 4 C -0.177 4.177 5 C 0.353 3.647 6 O -0.463 6.463 7 N -0.370 5.370 8 C -0.004 4.004 9 C -0.103 4.103 10 C 0.001 3.999 11 C -0.114 4.114 12 C -0.164 4.164 13 C -0.005 4.005 14 N -0.339 5.339 15 C -0.368 4.368 16 H 0.076 0.924 17 C -0.227 4.227 18 N -0.604 5.604 19 Si 0.771 3.229 20 H -0.205 1.205 21 H -0.247 1.247 22 H -0.185 1.185 23 C 0.038 3.962 24 H 0.079 0.921 25 H 0.078 0.922 26 H 0.095 0.905 27 H 0.174 0.826 28 H 0.092 0.908 29 H 0.103 0.897 30 H 0.085 0.915 31 H 0.102 0.898 32 H 0.113 0.887 33 H 0.103 0.897 34 H 0.108 0.892 35 H 0.082 0.918 36 H 0.091 0.909 37 H 0.076 0.924 38 H 0.097 0.903 39 H 0.050 0.950 40 H 0.065 0.935 41 H 0.068 0.932 42 H 0.058 0.942 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -13.891 -11.516 3.289 18.342 hybrid contribution 0.586 0.925 0.331 1.144 sum -13.306 -10.592 3.620 17.388 Atomic orbital electron populations 1.20945 0.92386 1.01801 1.02253 1.23923 0.96910 0.97393 0.90151 1.21545 0.97379 0.92157 1.09767 1.21096 0.89744 1.03993 1.02885 1.18620 0.86396 0.83907 0.75742 1.90736 1.14735 1.87577 1.53269 1.50052 1.09658 1.05263 1.72024 1.23226 0.97227 0.78516 1.01389 1.22486 0.94900 0.95916 0.97008 1.23360 0.82119 0.93424 1.00976 1.21064 0.96358 1.02049 0.91922 1.21905 0.96059 0.98118 1.00346 1.21364 0.98680 0.96622 0.83851 1.44434 1.02754 1.85536 1.01166 1.18844 0.90356 1.28358 0.99286 0.92426 1.25827 0.95178 1.00654 1.01068 1.69957 0.98871 1.45238 1.46293 0.86001 0.77272 0.79476 0.80188 1.20465 1.24700 1.18486 1.20942 0.84667 0.94354 0.96264 0.92118 0.92161 0.90460 0.82620 0.90843 0.89691 0.91459 0.89784 0.88684 0.89728 0.89186 0.91762 0.90859 0.92398 0.90280 0.95007 0.93530 0.93174 0.94204 0.91800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.47 8.45 71.24 0.60 -1.87 16 2 C -0.06 -1.25 9.95 24.52 0.24 -1.01 16 3 C -0.21 -4.85 6.00 -18.70 -0.11 -4.97 16 4 C -0.12 -2.42 8.57 71.24 0.61 -1.81 16 5 C 0.56 16.56 7.95 86.57 0.69 17.25 16 6 O -0.58 -20.09 13.80 -4.08 -0.06 -20.14 16 7 N -0.64 -17.48 3.45 -847.55 -2.92 -20.41 16 8 C 0.12 3.00 7.97 86.30 0.69 3.69 16 9 C -0.10 -2.78 0.87 -52.03 -0.05 -2.82 16 10 C 0.12 3.34 5.17 86.31 0.45 3.79 16 11 C -0.08 -2.01 5.02 30.53 0.15 -1.86 16 12 C -0.13 -3.78 6.01 30.70 0.18 -3.60 16 13 C 0.12 4.65 4.17 86.35 0.36 5.01 16 14 N -0.61 -26.21 2.77 -699.55 -1.94 -28.15 16 15 C -0.24 -12.61 10.05 84.04 0.84 -11.76 16 16 H 0.06 3.31 8.06 -2.91 -0.02 3.28 16 17 C -0.03 -1.82 5.24 84.86 0.44 -1.38 16 18 N -0.96 -58.25 13.97 21.65 0.30 -57.95 16 19 Si 0.94 44.99 24.38 68.60 1.67 46.66 16 20 H -0.28 -12.60 6.64 99.48 0.66 -11.94 16 21 H -0.32 -15.74 7.11 99.48 0.71 -15.04 16 22 H -0.26 -11.86 6.63 99.48 0.66 -11.20 16 23 C 0.16 5.50 5.70 86.19 0.49 5.99 16 24 H 0.06 1.51 7.22 -2.39 -0.02 1.50 16 25 H 0.06 1.51 7.22 -2.39 -0.02 1.49 16 26 H 0.08 1.16 8.14 -2.39 -0.02 1.14 16 27 H 0.16 1.96 8.06 -2.91 -0.02 1.93 16 28 H 0.07 1.40 8.06 -2.39 -0.02 1.38 16 29 H 0.08 1.35 8.07 -2.39 -0.02 1.33 16 30 H 0.07 1.50 4.79 -2.39 -0.01 1.49 16 31 H 0.08 2.05 8.09 -2.39 -0.02 2.03 16 32 H 0.10 2.20 8.09 -2.39 -0.02 2.19 16 33 H 0.08 2.38 7.90 -2.39 -0.02 2.37 16 34 H 0.09 2.41 5.62 -2.38 -0.01 2.40 16 35 H 0.06 1.62 8.02 -2.39 -0.02 1.60 16 36 H 0.07 1.80 8.14 -2.38 -0.02 1.79 16 37 H 0.06 1.83 7.38 -2.39 -0.02 1.81 16 38 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 39 H 0.03 1.20 7.18 -2.38 -0.02 1.19 16 40 H 0.05 2.05 4.39 -2.39 -0.01 2.04 16 41 H 0.26 15.14 8.31 -92.71 -0.77 14.37 16 42 H 0.04 1.29 8.14 -2.39 -0.02 1.27 16 43 H 0.06 2.18 7.78 -2.39 -0.02 2.16 16 Total: -1.00 -66.31 326.66 3.55 -62.76 By element: Atomic # 1 Polarization: 11.69 SS G_CDS: 0.89 Total: 12.58 kcal Atomic # 6 Polarization: -0.95 SS G_CDS: 5.60 Total: 4.65 kcal Atomic # 7 Polarization: -101.95 SS G_CDS: -4.56 Total: -106.51 kcal Atomic # 8 Polarization: -20.09 SS G_CDS: -0.06 Total: -20.14 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 1.67 Total: 46.66 kcal Total: -66.31 3.55 -62.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000981699256.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.467 kcal (2) G-P(sol) polarization free energy of solvation -66.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.755 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds