Wall clock time and date at job start Tue Mar 31 2020 00:02:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 110.88799 * 2 1 4 4 C 1.55133 * 111.19191 * 236.07084 * 2 1 3 5 5 N 1.47428 * 104.71846 * 279.19025 * 4 2 1 6 6 C 1.34777 * 125.64664 * 155.82268 * 5 4 2 7 7 O 1.21621 * 119.99933 * 359.71021 * 6 5 4 8 8 C 1.47102 * 120.00040 * 179.71368 * 6 5 4 9 9 C 1.32996 * 119.99807 * 185.93363 * 8 6 5 10 10 C 1.50703 * 119.99814 * 6.37777 * 9 8 6 11 11 C 1.53002 * 117.49652 * 246.67112 * 10 9 8 12 12 C 1.53002 * 60.00079 * 252.51618 * 11 10 9 13 13 C 1.47023 * 108.70521 * 335.55225 * 5 4 2 14 14 C 1.54319 * 107.27012 * 1.28875 * 13 5 4 15 15 H 1.09004 * 110.72284 * 263.82463 * 14 13 5 16 16 N 1.46506 * 110.72019 * 140.73272 * 14 13 5 17 17 C 1.36933 * 119.99718 * 86.45318 * 16 14 13 18 18 H 1.08002 * 120.00500 * 359.97438 * 17 16 14 19 19 C 1.38816 * 119.99711 * 180.02562 * 17 16 14 20 20 N 1.31615 * 120.00140 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99807 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47237 * 359.97438 * 21 19 17 23 23 H 1.48502 * 109.47313 * 120.00030 * 21 19 17 24 24 H 1.48504 * 109.46741 * 239.99915 * 21 19 17 25 25 H 1.08999 * 109.46778 * 296.11530 * 1 2 3 26 26 H 1.08996 * 109.47311 * 56.11903 * 1 2 3 27 27 H 1.09004 * 109.46671 * 176.11635 * 1 2 3 28 28 H 1.08993 * 109.47547 * 183.87934 * 3 2 1 29 29 H 1.08998 * 109.47197 * 303.88696 * 3 2 1 30 30 H 1.09002 * 109.46477 * 63.87993 * 3 2 1 31 31 H 1.08999 * 110.49795 * 160.35323 * 4 2 1 32 32 H 1.08997 * 110.34631 * 37.95232 * 4 2 1 33 33 H 1.07996 * 119.99654 * 5.94203 * 8 6 5 34 34 H 1.08002 * 119.99864 * 186.36900 * 9 8 6 35 35 H 1.08995 * 115.56691 * 32.36870 * 10 9 8 36 36 H 1.09003 * 117.49353 * 145.02619 * 11 10 9 37 37 H 1.08995 * 117.49851 * 0.02562 * 11 10 9 38 38 H 1.08996 * 117.49736 * 107.49312 * 12 11 10 39 39 H 1.08995 * 117.49746 * 252.51073 * 12 11 10 40 40 H 1.08994 * 109.88118 * 120.70849 * 13 5 4 41 41 H 1.09002 * 109.88059 * 241.71811 * 13 5 4 42 42 H 0.96993 * 120.00106 * 266.45546 * 16 14 13 43 43 H 0.97003 * 120.00430 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0755 1.4294 0.0000 4 6 2.0908 -0.8073 -1.2001 5 7 2.0139 -2.2162 -0.7725 6 6 1.9472 -3.2834 -1.5929 7 8 1.9420 -3.1243 -2.7986 8 6 1.8806 -4.6408 -1.0298 9 6 1.9338 -5.6980 -1.8350 10 6 2.2063 -5.5122 -3.3055 11 6 1.0792 -5.8554 -4.2816 12 6 2.3004 -6.7705 -4.1709 13 6 2.0286 -2.2644 0.6968 14 6 2.0862 -0.8075 1.2025 15 1 3.1134 -0.5155 1.4212 16 7 1.2376 -0.6351 2.3842 17 6 1.7369 -0.9036 3.6307 18 1 2.7561 -1.2429 3.7427 19 6 0.9327 -0.7407 4.7504 20 7 -0.3095 -0.3277 4.6140 21 14 1.6141 -1.1063 6.4508 22 1 3.0258 -1.5516 6.3332 23 1 1.5495 0.1210 7.2844 24 1 0.8083 -2.1795 7.0867 25 1 -0.3633 0.4524 0.9228 26 1 -0.3634 0.5729 -0.8531 27 1 -0.3633 -1.0254 -0.0696 28 1 3.1629 1.4034 -0.0695 29 1 1.6698 1.9732 -0.8531 30 1 1.7823 1.9301 0.9228 31 1 3.1253 -0.5271 -1.3986 32 1 1.4765 -0.6457 -2.0858 33 1 1.7883 -4.7788 0.0373 34 1 1.7819 -6.6896 -1.4349 35 1 2.8564 -4.6757 -3.5614 36 1 0.9878 -5.2445 -5.1797 37 1 0.1406 -6.2152 -3.8602 38 1 2.1652 -7.7325 -3.6767 39 1 3.0124 -6.7616 -4.9961 40 1 1.1220 -2.7476 1.0609 41 1 2.9050 -2.8136 1.0409 42 1 0.3221 -0.3308 2.2837 43 1 -0.8716 -0.2142 5.3963 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000995593898.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:02:41 Heat of formation + Delta-G solvation = 24.248259 kcal Electronic energy + Delta-G solvation = -22088.174875 eV Core-core repulsion = 18942.015201 eV Total energy + Delta-G solvation = -3146.159675 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.05118 -38.39782 -36.94466 -34.09511 -33.18893 -32.24334 -30.82029 -27.55999 -26.99958 -26.68588 -24.01464 -23.33266 -22.37578 -21.55792 -20.61868 -18.84892 -18.10898 -17.26991 -16.84474 -15.76236 -15.58653 -15.11227 -14.51545 -14.20630 -14.05522 -13.68683 -13.46848 -13.27003 -12.89408 -12.66515 -12.44017 -12.12709 -11.97437 -11.69387 -11.59717 -11.50520 -11.24336 -11.08177 -11.01306 -10.93061 -10.54712 -10.49050 -10.37493 -10.20829 -9.87430 -9.68365 -9.37767 -9.07040 -8.98320 -8.20209 -7.09848 -5.87084 -3.17228 1.42539 3.34515 3.37664 3.44091 3.45645 3.45777 3.97532 4.50261 4.57716 4.73212 4.90828 5.00532 5.08878 5.09943 5.20954 5.32661 5.46874 5.50516 5.55756 5.60217 5.73913 5.80689 5.81875 5.86181 5.97162 6.03941 6.05648 6.13688 6.18604 6.25197 6.29744 6.34357 6.38374 6.45702 6.54151 6.63749 6.69385 6.77495 6.90763 7.62439 7.89034 8.31234 8.47162 9.43528 9.98167 10.33281 11.35119 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.020446 B = 0.004261 C = 0.003741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.130487 B = 6570.002518 C = 7483.755096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.086 4.086 3 C -0.129 4.129 4 C 0.119 3.881 5 N -0.607 5.607 6 C 0.555 3.445 7 O -0.550 6.550 8 C -0.204 4.204 9 C -0.046 4.046 10 C -0.122 4.122 11 C -0.158 4.158 12 C -0.190 4.190 13 C 0.074 3.926 14 C 0.180 3.820 15 H 0.065 0.935 16 N -0.712 5.712 17 C -0.247 4.247 18 H 0.072 0.928 19 C -0.008 4.008 20 N -0.930 5.930 21 Si 0.907 3.093 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.291 1.291 25 H 0.072 0.928 26 H 0.048 0.952 27 H 0.053 0.947 28 H 0.053 0.947 29 H 0.050 0.950 30 H 0.067 0.933 31 H 0.064 0.936 32 H 0.072 0.928 33 H 0.130 0.870 34 H 0.124 0.876 35 H 0.133 0.867 36 H 0.094 0.906 37 H 0.090 0.910 38 H 0.091 0.909 39 H 0.093 0.907 40 H 0.073 0.927 41 H 0.058 0.942 42 H 0.390 0.610 43 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.253 -6.379 -13.455 15.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.088 4.088 3 C -0.187 4.187 4 C -0.004 4.004 5 N -0.339 5.339 6 C 0.347 3.653 7 O -0.431 6.431 8 C -0.224 4.224 9 C -0.066 4.066 10 C -0.140 4.140 11 C -0.195 4.195 12 C -0.227 4.227 13 C -0.052 4.052 14 C 0.068 3.932 15 H 0.083 0.917 16 N -0.354 5.354 17 C -0.378 4.378 18 H 0.090 0.910 19 C -0.205 4.205 20 N -0.577 5.577 21 Si 0.738 3.262 22 H -0.205 1.205 23 H -0.218 1.218 24 H -0.218 1.218 25 H 0.091 0.909 26 H 0.067 0.933 27 H 0.072 0.928 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.086 0.914 31 H 0.082 0.918 32 H 0.091 0.909 33 H 0.148 0.852 34 H 0.142 0.858 35 H 0.150 0.850 36 H 0.113 0.887 37 H 0.109 0.891 38 H 0.109 0.891 39 H 0.112 0.888 40 H 0.091 0.909 41 H 0.076 0.924 42 H 0.227 0.773 43 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 4.322 -6.366 -13.923 15.908 hybrid contribution -0.026 -0.266 1.237 1.266 sum 4.296 -6.633 -12.686 14.946 Atomic orbital electron populations 1.21637 0.93576 1.01806 1.01867 1.22015 0.96491 0.95341 0.94931 1.21646 1.00201 0.94674 1.02140 1.22314 1.00325 0.80275 0.97521 1.48422 1.71529 1.05975 1.08017 1.18263 0.76788 0.84643 0.85653 1.90702 1.51857 1.86266 1.14269 1.22696 1.06881 0.92201 1.00659 1.23046 0.92130 0.97832 0.93570 1.21560 1.03754 0.99128 0.89543 1.22779 0.93052 1.02676 1.00999 1.23069 1.01630 0.94767 1.03198 1.23317 1.01531 1.02755 0.77607 1.21207 0.95392 0.89735 0.86876 0.91722 1.42539 1.13187 1.79337 1.00365 1.19305 0.96782 1.38038 0.83682 0.90975 1.24748 0.95973 1.01827 0.97940 1.69661 1.06655 1.52392 1.29018 0.86133 0.78015 0.77492 0.84604 1.20479 1.21814 1.21831 0.90936 0.93338 0.92759 0.92840 0.93114 0.91352 0.91813 0.90939 0.85217 0.85808 0.84955 0.88712 0.89113 0.89054 0.88844 0.90871 0.92368 0.77321 0.93402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.15 7.95 37.16 0.30 -1.86 16 2 C -0.09 -1.37 0.87 -152.24 -0.13 -1.50 16 3 C -0.13 -1.83 8.68 37.16 0.32 -1.51 16 4 C 0.12 1.81 5.85 -2.41 -0.01 1.80 16 5 N -0.61 -9.87 3.31 -171.77 -0.57 -10.44 16 6 C 0.55 9.14 7.71 -12.66 -0.10 9.04 16 7 O -0.55 -9.98 13.53 5.26 0.07 -9.91 16 8 C -0.20 -2.82 9.53 -37.81 -0.36 -3.18 16 9 C -0.05 -0.55 9.74 -36.12 -0.35 -0.91 16 10 C -0.12 -1.52 4.38 -91.77 -0.40 -1.92 16 11 C -0.16 -1.77 10.23 -26.73 -0.27 -2.04 16 12 C -0.19 -1.86 10.23 -26.73 -0.27 -2.13 16 13 C 0.07 1.27 5.51 -3.07 -0.02 1.25 16 14 C 0.18 3.33 2.84 -66.10 -0.19 3.15 16 15 H 0.06 1.21 8.02 -51.93 -0.42 0.80 16 16 N -0.71 -16.41 5.08 -51.65 -0.26 -16.67 16 17 C -0.25 -6.40 9.98 -15.06 -0.15 -6.55 16 18 H 0.07 1.82 7.83 -52.49 -0.41 1.41 16 19 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 16 20 N -0.93 -26.73 13.06 55.49 0.72 -26.00 16 21 Si 0.91 21.42 29.55 -169.99 -5.02 16.40 16 22 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 23 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 24 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 25 H 0.07 1.33 6.35 -51.93 -0.33 1.00 16 26 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 27 H 0.05 0.94 7.91 -51.93 -0.41 0.53 16 28 H 0.05 0.70 8.07 -51.93 -0.42 0.28 16 29 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 30 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 31 H 0.06 0.91 7.99 -51.93 -0.41 0.50 16 32 H 0.07 1.12 7.95 -51.93 -0.41 0.71 16 33 H 0.13 1.67 7.39 -52.49 -0.39 1.29 16 34 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 35 H 0.13 1.95 6.17 -51.93 -0.32 1.63 16 36 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 38 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 40 H 0.07 1.37 8.01 -51.93 -0.42 0.95 16 41 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 42 H 0.39 9.53 5.28 -40.82 -0.22 9.31 16 43 H 0.26 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 347.34 15.07 5.23 5.23 Total: -1.00 -28.99 347.34 -8.66 -37.65 By element: Atomic # 1 Polarization: 17.52 SS G_CDS: -7.09 Total: 10.43 kcal Atomic # 6 Polarization: -4.95 SS G_CDS: -1.74 Total: -6.69 kcal Atomic # 7 Polarization: -53.01 SS G_CDS: -0.11 Total: -53.11 kcal Atomic # 8 Polarization: -9.98 SS G_CDS: 0.07 Total: -9.91 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -28.99 -8.66 -37.65 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000995593898.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.900 kcal (2) G-P(sol) polarization free energy of solvation -28.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.651 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds