Wall clock time and date at job start Tue Mar 31 2020 00:02:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 110.88799 * 2 1 4 4 C 1.55133 * 111.19191 * 236.07084 * 2 1 3 5 5 N 1.47428 * 104.71846 * 279.19025 * 4 2 1 6 6 C 1.34777 * 125.64664 * 155.82268 * 5 4 2 7 7 O 1.21621 * 119.99933 * 359.71021 * 6 5 4 8 8 C 1.47102 * 120.00040 * 179.71368 * 6 5 4 9 9 C 1.32996 * 119.99807 * 185.93363 * 8 6 5 10 10 C 1.50703 * 119.99814 * 6.37777 * 9 8 6 11 11 C 1.53002 * 117.49652 * 246.67112 * 10 9 8 12 12 C 1.53002 * 60.00079 * 252.51618 * 11 10 9 13 13 C 1.47023 * 108.70521 * 335.55225 * 5 4 2 14 14 C 1.54319 * 107.27012 * 1.28875 * 13 5 4 15 15 H 1.09004 * 110.72284 * 263.82463 * 14 13 5 16 16 N 1.46506 * 110.72019 * 140.73272 * 14 13 5 17 17 C 1.36933 * 119.99718 * 86.45318 * 16 14 13 18 18 H 1.08002 * 120.00500 * 359.97438 * 17 16 14 19 19 C 1.38816 * 119.99711 * 180.02562 * 17 16 14 20 20 N 1.31615 * 120.00140 * 359.97438 * 19 17 16 21 21 Si 1.86801 * 119.99807 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47237 * 359.97438 * 21 19 17 23 23 H 1.48502 * 109.47313 * 120.00030 * 21 19 17 24 24 H 1.48504 * 109.46741 * 239.99915 * 21 19 17 25 25 H 1.08999 * 109.46778 * 296.11530 * 1 2 3 26 26 H 1.08996 * 109.47311 * 56.11903 * 1 2 3 27 27 H 1.09004 * 109.46671 * 176.11635 * 1 2 3 28 28 H 1.08993 * 109.47547 * 183.87934 * 3 2 1 29 29 H 1.08998 * 109.47197 * 303.88696 * 3 2 1 30 30 H 1.09002 * 109.46477 * 63.87993 * 3 2 1 31 31 H 1.08999 * 110.49795 * 160.35323 * 4 2 1 32 32 H 1.08997 * 110.34631 * 37.95232 * 4 2 1 33 33 H 1.07996 * 119.99654 * 5.94203 * 8 6 5 34 34 H 1.08002 * 119.99864 * 186.36900 * 9 8 6 35 35 H 1.08995 * 115.56691 * 32.36870 * 10 9 8 36 36 H 1.09003 * 117.49353 * 145.02619 * 11 10 9 37 37 H 1.08995 * 117.49851 * 0.02562 * 11 10 9 38 38 H 1.08996 * 117.49736 * 107.49312 * 12 11 10 39 39 H 1.08995 * 117.49746 * 252.51073 * 12 11 10 40 40 H 1.08994 * 109.88118 * 120.70849 * 13 5 4 41 41 H 1.09002 * 109.88059 * 241.71811 * 13 5 4 42 42 H 0.96993 * 120.00106 * 266.45546 * 16 14 13 43 43 H 0.97003 * 120.00430 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0755 1.4294 0.0000 4 6 2.0908 -0.8073 -1.2001 5 7 2.0139 -2.2162 -0.7725 6 6 1.9472 -3.2834 -1.5929 7 8 1.9420 -3.1243 -2.7986 8 6 1.8806 -4.6408 -1.0298 9 6 1.9338 -5.6980 -1.8350 10 6 2.2063 -5.5122 -3.3055 11 6 1.0792 -5.8554 -4.2816 12 6 2.3004 -6.7705 -4.1709 13 6 2.0286 -2.2644 0.6968 14 6 2.0862 -0.8075 1.2025 15 1 3.1134 -0.5155 1.4212 16 7 1.2376 -0.6351 2.3842 17 6 1.7369 -0.9036 3.6307 18 1 2.7561 -1.2429 3.7427 19 6 0.9327 -0.7407 4.7504 20 7 -0.3095 -0.3277 4.6140 21 14 1.6141 -1.1063 6.4508 22 1 3.0258 -1.5516 6.3332 23 1 1.5495 0.1210 7.2844 24 1 0.8083 -2.1795 7.0867 25 1 -0.3633 0.4524 0.9228 26 1 -0.3634 0.5729 -0.8531 27 1 -0.3633 -1.0254 -0.0696 28 1 3.1629 1.4034 -0.0695 29 1 1.6698 1.9732 -0.8531 30 1 1.7823 1.9301 0.9228 31 1 3.1253 -0.5271 -1.3986 32 1 1.4765 -0.6457 -2.0858 33 1 1.7883 -4.7788 0.0373 34 1 1.7819 -6.6896 -1.4349 35 1 2.8564 -4.6757 -3.5614 36 1 0.9878 -5.2445 -5.1797 37 1 0.1406 -6.2152 -3.8602 38 1 2.1652 -7.7325 -3.6767 39 1 3.0124 -6.7616 -4.9961 40 1 1.1220 -2.7476 1.0609 41 1 2.9050 -2.8136 1.0409 42 1 0.3221 -0.3308 2.2837 43 1 -0.8716 -0.2142 5.3963 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000995593898.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:02:41 Heat of formation + Delta-G solvation = 8.465396 kcal Electronic energy + Delta-G solvation = -22088.859272 eV Core-core repulsion = 18942.015201 eV Total energy + Delta-G solvation = -3146.844071 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.35660 -39.64174 -37.97519 -35.82549 -34.59018 -33.30462 -32.62526 -29.15135 -28.32707 -27.88756 -25.82571 -24.48063 -23.19440 -22.91389 -21.76673 -20.24685 -19.34597 -19.12734 -18.08149 -17.13594 -16.68145 -16.47730 -16.04609 -15.64920 -15.47538 -14.96570 -14.86742 -14.35366 -14.31604 -14.04536 -13.83669 -13.50990 -13.24705 -12.98626 -12.86919 -12.80447 -12.64783 -12.53588 -12.39921 -12.09120 -12.03323 -11.96118 -11.84468 -11.50075 -11.32410 -11.27943 -10.93385 -10.53858 -10.07231 -9.50512 -9.02291 -7.92419 -5.21288 0.37415 1.50395 1.51624 1.60648 2.09097 2.26466 2.58731 3.09286 3.38132 3.41994 3.68356 3.80809 3.82400 3.90667 4.06491 4.16959 4.20395 4.31351 4.38414 4.41863 4.45738 4.52265 4.66947 4.78617 4.79157 4.85013 4.89044 5.00143 5.02252 5.07602 5.11804 5.20037 5.23464 5.27004 5.28390 5.41027 5.43568 5.50959 5.57252 5.60925 6.29307 6.59156 7.20666 7.37564 8.10341 8.34898 9.30895 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.020446 B = 0.004261 C = 0.003741 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1369.130487 B = 6570.002518 C = 7483.755096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.079 4.079 3 C -0.124 4.124 4 C 0.122 3.878 5 N -0.610 5.610 6 C 0.549 3.451 7 O -0.571 6.571 8 C -0.233 4.233 9 C -0.021 4.021 10 C -0.149 4.149 11 C -0.164 4.164 12 C -0.163 4.163 13 C 0.089 3.911 14 C 0.173 3.827 15 H 0.067 0.933 16 N -0.722 5.722 17 C -0.239 4.239 18 H 0.079 0.921 19 C -0.070 4.070 20 N -0.967 5.967 21 Si 0.967 3.033 22 H -0.265 1.265 23 H -0.297 1.297 24 H -0.297 1.297 25 H 0.049 0.951 26 H 0.070 0.930 27 H 0.038 0.962 28 H 0.067 0.933 29 H 0.073 0.927 30 H 0.047 0.953 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.136 0.864 34 H 0.158 0.842 35 H 0.106 0.894 36 H 0.089 0.911 37 H 0.097 0.903 38 H 0.113 0.887 39 H 0.103 0.897 40 H 0.055 0.945 41 H 0.067 0.933 42 H 0.380 0.620 43 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.490 -7.737 -14.490 17.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.080 4.080 3 C -0.182 4.182 4 C -0.001 4.001 5 N -0.342 5.342 6 C 0.342 3.658 7 O -0.454 6.454 8 C -0.253 4.253 9 C -0.040 4.040 10 C -0.167 4.167 11 C -0.201 4.201 12 C -0.199 4.199 13 C -0.037 4.037 14 C 0.062 3.938 15 H 0.085 0.915 16 N -0.363 5.363 17 C -0.371 4.371 18 H 0.097 0.903 19 C -0.262 4.262 20 N -0.618 5.618 21 Si 0.797 3.203 22 H -0.189 1.189 23 H -0.225 1.225 24 H -0.224 1.224 25 H 0.067 0.933 26 H 0.089 0.911 27 H 0.057 0.943 28 H 0.086 0.914 29 H 0.091 0.909 30 H 0.066 0.934 31 H 0.096 0.904 32 H 0.091 0.909 33 H 0.154 0.846 34 H 0.175 0.825 35 H 0.124 0.876 36 H 0.108 0.892 37 H 0.116 0.884 38 H 0.131 0.869 39 H 0.121 0.879 40 H 0.073 0.927 41 H 0.085 0.915 42 H 0.216 0.784 43 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 5.606 -7.735 -14.992 17.777 hybrid contribution -0.378 0.115 1.397 1.452 sum 5.228 -7.620 -13.596 16.439 Atomic orbital electron populations 1.21554 0.94116 1.00942 1.01580 1.21970 0.95979 0.96243 0.93808 1.21610 1.01165 0.93329 1.02064 1.22336 1.01116 0.79690 0.96938 1.48444 1.71780 1.06535 1.07431 1.18731 0.76111 0.85513 0.85425 1.90696 1.52969 1.86698 1.15057 1.22675 1.10021 0.91339 1.01285 1.23414 0.88739 0.98757 0.93111 1.21493 1.04655 1.00286 0.90276 1.22845 0.93628 1.03285 1.00346 1.23173 1.00244 0.94343 1.02190 1.22937 1.01010 1.01416 0.78310 1.21386 0.94830 0.91080 0.86470 0.91542 1.42657 1.13286 1.79397 1.00999 1.19678 0.96821 1.35813 0.84775 0.90275 1.25469 0.96399 1.03054 1.01287 1.69809 1.07932 1.54686 1.29365 0.85160 0.77962 0.76631 0.80509 1.18903 1.22460 1.22419 0.93253 0.91060 0.94276 0.91422 0.90855 0.93393 0.90354 0.90868 0.84592 0.82487 0.87644 0.89212 0.88445 0.86892 0.87889 0.92685 0.91512 0.78397 0.94104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.08 7.95 71.98 0.57 -3.51 16 2 C -0.08 -2.43 0.87 -50.71 -0.04 -2.47 16 3 C -0.12 -3.34 8.68 71.98 0.62 -2.72 16 4 C 0.12 3.56 5.85 86.93 0.51 4.07 16 5 N -0.61 -19.46 3.31 -815.61 -2.70 -22.16 16 6 C 0.55 17.84 7.71 86.57 0.67 18.50 16 7 O -0.57 -20.64 13.53 -4.10 -0.06 -20.70 16 8 C -0.23 -6.21 9.53 23.43 0.22 -5.99 16 9 C -0.02 -0.46 9.74 24.52 0.24 -0.22 16 10 C -0.15 -3.48 4.38 -11.54 -0.05 -3.53 16 11 C -0.16 -3.38 10.23 30.60 0.31 -3.07 16 12 C -0.16 -2.70 10.23 30.60 0.31 -2.39 16 13 C 0.09 3.04 5.51 86.73 0.48 3.51 16 14 C 0.17 6.33 2.84 46.18 0.13 6.46 16 15 H 0.07 2.43 8.02 -2.39 -0.02 2.41 16 16 N -0.72 -33.65 5.08 -317.32 -1.61 -35.27 16 17 C -0.24 -12.39 9.98 84.04 0.84 -11.55 16 18 H 0.08 3.91 7.83 -2.91 -0.02 3.89 16 19 C -0.07 -3.80 5.50 84.86 0.47 -3.34 16 20 N -0.97 -56.92 13.06 21.65 0.28 -56.64 16 21 Si 0.97 44.33 29.55 68.60 2.03 46.36 16 22 H -0.26 -11.32 7.11 99.48 0.71 -10.61 16 23 H -0.30 -13.79 7.11 99.48 0.71 -13.08 16 24 H -0.30 -13.74 7.11 99.48 0.71 -13.03 16 25 H 0.05 1.85 6.35 -2.39 -0.02 1.84 16 26 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 27 H 0.04 1.37 7.91 -2.39 -0.02 1.35 16 28 H 0.07 1.62 8.07 -2.39 -0.02 1.60 16 29 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 30 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.08 2.08 7.99 -2.39 -0.02 2.06 16 32 H 0.07 2.16 7.95 -2.39 -0.02 2.14 16 33 H 0.14 3.39 7.39 -2.91 -0.02 3.37 16 34 H 0.16 2.36 8.06 -2.91 -0.02 2.34 16 35 H 0.11 3.09 6.17 -2.39 -0.01 3.07 16 36 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 37 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 38 H 0.11 1.42 8.14 -2.39 -0.02 1.40 16 39 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.05 2.08 8.01 -2.39 -0.02 2.06 16 41 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 42 H 0.38 19.14 5.28 -92.71 -0.49 18.65 16 43 H 0.25 14.37 8.31 -92.71 -0.77 13.60 16 Total: -1.00 -62.85 347.34 3.72 -59.14 By element: Atomic # 1 Polarization: 34.99 SS G_CDS: 0.49 Total: 35.48 kcal Atomic # 6 Polarization: -11.51 SS G_CDS: 5.28 Total: -6.23 kcal Atomic # 7 Polarization: -110.03 SS G_CDS: -4.03 Total: -114.06 kcal Atomic # 8 Polarization: -20.64 SS G_CDS: -0.06 Total: -20.70 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.36 kcal Total: -62.85 3.72 -59.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000995593898.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.605 kcal (2) G-P(sol) polarization free energy of solvation -62.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.750 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.139 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.465 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds