Wall clock time and date at job start Tue Mar 31 2020 00:02:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 110.38843 * 2 1 4 4 C 1.54385 * 110.34361 * 237.76903 * 2 1 3 5 5 N 1.48148 * 104.61749 * 264.99501 * 4 2 1 6 6 C 1.34777 * 127.84010 * 140.42074 * 5 4 2 7 7 O 1.21278 * 119.99889 * 359.97438 * 6 5 4 8 8 C 1.50704 * 119.99946 * 180.02562 * 6 5 4 9 9 C 1.54639 * 111.03475 * 295.32605 * 8 6 5 10 10 C 1.51162 * 104.69227 * 217.36432 * 9 8 6 11 11 C 1.30526 * 111.12320 * 16.38459 * 10 9 8 12 12 C 1.51099 * 111.10262 * 0.03122 * 11 10 9 13 13 C 1.48311 * 104.39204 * 320.47468 * 5 4 2 14 14 C 1.54288 * 110.34378 * 122.22885 * 2 1 3 15 15 H 1.08998 * 110.34121 * 359.89864 * 14 2 1 16 16 N 1.46498 * 110.34321 * 237.74012 * 14 2 1 17 17 C 1.36943 * 119.99752 * 156.19746 * 16 14 2 18 18 H 1.08002 * 119.99793 * 0.27665 * 17 16 14 19 19 C 1.38811 * 120.00012 * 180.27737 * 17 16 14 20 20 N 1.31624 * 119.99698 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00072 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47159 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.47290 * 120.00044 * 21 19 17 24 24 H 1.48503 * 109.47163 * 240.00049 * 21 19 17 25 25 H 1.09002 * 109.47253 * 297.76695 * 1 2 3 26 26 H 1.08997 * 109.46986 * 57.77053 * 1 2 3 27 27 H 1.09005 * 109.47306 * 177.77242 * 1 2 3 28 28 H 1.09001 * 109.47313 * 182.23215 * 3 2 1 29 29 H 1.09005 * 109.47160 * 302.23130 * 3 2 1 30 30 H 1.09001 * 109.47526 * 62.22761 * 3 2 1 31 31 H 1.09000 * 110.40965 * 23.77339 * 4 2 1 32 32 H 1.08995 * 110.40806 * 146.09591 * 4 2 1 33 33 H 1.08997 * 110.91478 * 59.29417 * 8 6 5 34 34 H 1.09003 * 110.38426 * 336.15324 * 9 8 6 35 35 H 1.09001 * 110.38261 * 98.52215 * 9 8 6 36 36 H 1.08008 * 124.42597 * 196.42453 * 10 9 8 37 37 H 1.07997 * 124.44623 * 180.02562 * 11 10 9 38 38 H 1.08998 * 110.38700 * 224.75122 * 12 11 10 39 39 H 1.09002 * 110.38968 * 102.37719 * 12 11 10 40 40 H 1.09008 * 110.38448 * 280.72980 * 13 5 4 41 41 H 1.08997 * 110.51196 * 158.25217 * 13 5 4 42 42 H 0.97001 * 120.00384 * 336.48102 * 16 14 2 43 43 H 0.96999 * 119.99739 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0630 1.4341 0.0000 4 6 2.0667 -0.7720 -1.2245 5 7 2.3139 -2.1438 -0.7226 6 6 2.0775 -3.3105 -1.3545 7 8 1.6056 -3.3103 -2.4718 8 6 2.3985 -4.6155 -0.6724 9 6 3.9195 -4.7568 -0.4321 10 6 4.2108 -6.2209 -0.6696 11 6 3.2312 -6.7973 -1.3113 12 6 2.1233 -5.8142 -1.6098 13 6 2.8795 -1.9438 0.6337 14 6 2.0664 -0.7715 1.2237 15 1 1.2398 -1.1489 1.8258 16 7 2.9309 0.0924 2.0315 17 6 3.1203 -0.1788 3.3604 18 1 2.6359 -1.0320 3.8118 19 6 3.9348 0.6431 4.1272 20 7 4.5247 1.6832 3.5771 21 14 4.1938 0.2729 5.9397 22 1 3.4264 -0.9429 6.3112 23 1 5.6384 0.0435 6.1967 24 1 3.7231 1.4234 6.7521 25 1 -0.3634 0.4788 0.9093 26 1 -0.3633 0.5481 -0.8693 27 1 -0.3634 -1.0269 -0.0399 28 1 3.1521 1.4170 -0.0400 29 1 1.6758 1.9657 -0.8693 30 1 1.7408 1.9416 0.9093 31 1 1.3223 -0.7871 -2.0205 32 1 2.9938 -0.3229 -1.5805 33 1 1.8441 -4.7133 0.2610 34 1 4.4745 -4.1397 -1.1387 35 1 4.1693 -4.4804 0.5923 36 1 5.1113 -6.7241 -0.3495 37 1 3.2148 -7.8400 -1.5922 38 1 1.1526 -6.2564 -1.3857 39 1 2.1662 -5.4987 -2.6522 40 1 3.9352 -1.6798 0.5698 41 1 2.7472 -2.8406 1.2388 42 1 3.3658 0.8588 1.6261 43 1 5.0942 2.2573 4.1128 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000995603164.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:02:22 Heat of formation + Delta-G solvation = -1.604834 kcal Electronic energy + Delta-G solvation = -22597.431515 eV Core-core repulsion = 19450.150766 eV Total energy + Delta-G solvation = -3147.280749 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.31328 -38.69888 -37.10897 -34.13749 -33.17059 -30.83643 -29.75153 -28.21169 -27.63224 -26.90714 -25.95298 -23.90859 -22.27053 -21.21831 -18.98211 -18.78437 -18.35715 -17.37097 -16.85096 -16.18669 -15.66417 -15.19677 -14.57074 -14.12194 -13.84187 -13.76932 -13.55900 -12.92207 -12.72084 -12.63115 -12.36699 -12.21468 -11.83108 -11.79006 -11.70109 -11.57279 -11.31760 -11.21980 -11.12023 -10.96550 -10.95565 -10.53293 -10.48254 -10.18779 -9.88660 -9.70996 -9.55598 -9.05217 -8.95940 -8.38948 -7.07731 -5.87035 -3.16735 2.17599 2.82219 3.19846 3.37212 3.43714 3.45439 4.43131 4.49679 4.55883 4.74886 5.02638 5.10387 5.13622 5.18856 5.23225 5.46850 5.52956 5.64297 5.64946 5.66760 5.73690 5.81422 5.82348 5.87590 5.94089 5.98615 6.05738 6.12070 6.16881 6.26680 6.30594 6.33994 6.40736 6.46551 6.50674 6.61815 6.79466 6.82731 6.94212 7.62401 7.86274 8.31255 8.37796 9.43828 9.98786 10.33704 11.35252 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.016510 B = 0.005355 C = 0.004305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.550045 B = 5227.115058 C = 6502.072246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.088 4.088 3 C -0.130 4.130 4 C 0.116 3.884 5 N -0.616 5.616 6 C 0.541 3.459 7 O -0.556 6.556 8 C -0.111 4.111 9 C -0.090 4.090 10 C -0.166 4.166 11 C -0.167 4.167 12 C -0.086 4.086 13 C 0.077 3.923 14 C 0.175 3.825 15 H 0.062 0.938 16 N -0.716 5.716 17 C -0.246 4.246 18 H 0.071 0.929 19 C -0.008 4.008 20 N -0.930 5.930 21 Si 0.906 3.094 22 H -0.280 1.280 23 H -0.291 1.291 24 H -0.291 1.291 25 H 0.059 0.941 26 H 0.050 0.950 27 H 0.050 0.950 28 H 0.061 0.939 29 H 0.045 0.955 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.068 0.932 33 H 0.104 0.896 34 H 0.078 0.922 35 H 0.082 0.918 36 H 0.126 0.874 37 H 0.125 0.875 38 H 0.072 0.928 39 H 0.092 0.908 40 H 0.077 0.923 41 H 0.070 0.930 42 H 0.391 0.609 43 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.865 -10.246 -8.499 13.862 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.089 4.089 3 C -0.188 4.188 4 C -0.007 4.007 5 N -0.348 5.348 6 C 0.330 3.670 7 O -0.435 6.435 8 C -0.132 4.132 9 C -0.127 4.127 10 C -0.184 4.184 11 C -0.185 4.185 12 C -0.123 4.123 13 C -0.049 4.049 14 C 0.062 3.938 15 H 0.080 0.920 16 N -0.359 5.359 17 C -0.377 4.377 18 H 0.089 0.911 19 C -0.205 4.205 20 N -0.578 5.578 21 Si 0.737 3.263 22 H -0.205 1.205 23 H -0.218 1.218 24 H -0.218 1.218 25 H 0.078 0.922 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.080 0.920 29 H 0.064 0.936 30 H 0.091 0.909 31 H 0.094 0.906 32 H 0.086 0.914 33 H 0.122 0.878 34 H 0.096 0.904 35 H 0.101 0.899 36 H 0.144 0.856 37 H 0.143 0.857 38 H 0.091 0.909 39 H 0.110 0.890 40 H 0.095 0.905 41 H 0.088 0.912 42 H 0.229 0.771 43 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges -4.121 -10.362 -8.940 14.293 hybrid contribution 0.511 0.013 1.064 1.180 sum -3.610 -10.349 -7.876 13.497 Atomic orbital electron populations 1.21783 0.94159 1.01194 1.01598 1.21744 0.95740 0.96244 0.95215 1.21683 1.01169 0.94178 1.01765 1.22422 1.00474 0.81121 0.96636 1.49041 1.62123 1.05138 1.18515 1.19941 0.77544 0.84070 0.85435 1.90647 1.46076 1.87135 1.19602 1.22092 0.98265 0.92606 1.00244 1.21357 0.93460 0.94989 1.02882 1.23261 0.99236 0.95689 1.00173 1.23289 0.96419 0.99077 0.99681 1.21267 0.97856 0.92426 1.00739 1.23722 0.99353 1.00900 0.80896 1.21125 0.92629 0.89629 0.90396 0.91999 1.42732 1.54826 1.31195 1.07154 1.19303 1.23764 1.08996 0.85643 0.91092 1.24731 1.00027 0.97545 0.98168 1.69662 1.35332 1.17396 1.35379 0.86148 0.77511 0.77423 0.85255 1.20526 1.21839 1.21834 0.92151 0.93066 0.93136 0.91987 0.93646 0.90879 0.90613 0.91358 0.87793 0.90366 0.89949 0.85647 0.85742 0.90918 0.88960 0.90504 0.91201 0.77121 0.93429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.86 8.24 37.16 0.31 -1.55 16 2 C -0.09 -1.38 1.03 -153.11 -0.16 -1.54 16 3 C -0.13 -2.10 7.11 37.16 0.26 -1.83 16 4 C 0.12 1.79 6.15 -2.41 -0.01 1.78 16 5 N -0.62 -9.68 3.32 -169.17 -0.56 -10.24 16 6 C 0.54 8.62 7.17 -10.98 -0.08 8.54 16 7 O -0.56 -10.38 15.80 5.56 0.09 -10.29 16 8 C -0.11 -1.44 2.72 -90.05 -0.25 -1.69 16 9 C -0.09 -1.09 5.55 -26.79 -0.15 -1.23 16 10 C -0.17 -1.77 10.78 -35.67 -0.38 -2.16 16 11 C -0.17 -1.74 10.78 -35.70 -0.38 -2.13 16 12 C -0.09 -1.02 6.16 -26.83 -0.17 -1.19 16 13 C 0.08 1.27 5.95 -2.32 -0.01 1.25 16 14 C 0.17 3.19 3.33 -66.53 -0.22 2.97 16 15 H 0.06 1.17 7.67 -51.93 -0.40 0.77 16 16 N -0.72 -16.25 4.61 -52.07 -0.24 -16.49 16 17 C -0.25 -6.31 9.96 -15.06 -0.15 -6.46 16 18 H 0.07 1.77 7.83 -52.49 -0.41 1.36 16 19 C -0.01 -0.22 5.50 -17.43 -0.10 -0.32 16 20 N -0.93 -26.49 13.06 55.49 0.72 -25.77 16 21 Si 0.91 21.32 29.55 -169.99 -5.02 16.30 16 22 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 23 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 24 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 25 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 26 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 28 H 0.06 1.07 6.95 -51.93 -0.36 0.71 16 29 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.07 1.33 7.74 -51.93 -0.40 0.93 16 31 H 0.08 1.17 7.60 -51.93 -0.39 0.77 16 32 H 0.07 1.04 7.83 -51.93 -0.41 0.63 16 33 H 0.10 1.26 7.96 -51.93 -0.41 0.85 16 34 H 0.08 1.02 7.88 -51.93 -0.41 0.61 16 35 H 0.08 0.98 7.63 -51.93 -0.40 0.58 16 36 H 0.13 1.13 8.06 -52.48 -0.42 0.70 16 37 H 0.12 1.05 8.06 -52.49 -0.42 0.62 16 38 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 39 H 0.09 1.25 7.01 -51.93 -0.36 0.89 16 40 H 0.08 1.37 8.06 -51.92 -0.42 0.95 16 41 H 0.07 1.08 6.78 -51.93 -0.35 0.72 16 42 H 0.39 9.35 5.05 -40.82 -0.21 9.15 16 43 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 LS Contribution 339.20 15.07 5.11 5.11 Total: -1.00 -29.03 339.20 -8.42 -37.45 By element: Atomic # 1 Polarization: 16.51 SS G_CDS: -7.03 Total: 9.48 kcal Atomic # 6 Polarization: -4.06 SS G_CDS: -1.49 Total: -5.55 kcal Atomic # 7 Polarization: -52.42 SS G_CDS: -0.08 Total: -52.50 kcal Atomic # 8 Polarization: -10.38 SS G_CDS: 0.09 Total: -10.29 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -29.03 -8.42 -37.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000995603164.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.843 kcal (2) G-P(sol) polarization free energy of solvation -29.030 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.418 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.448 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds