Wall clock time and date at job start Tue Mar 31 2020 00:02:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 110.38843 * 2 1 4 4 C 1.54385 * 110.34361 * 237.76903 * 2 1 3 5 5 N 1.48148 * 104.61749 * 264.99501 * 4 2 1 6 6 C 1.34777 * 127.84010 * 140.42074 * 5 4 2 7 7 O 1.21278 * 119.99889 * 359.97438 * 6 5 4 8 8 C 1.50704 * 119.99946 * 180.02562 * 6 5 4 9 9 C 1.54639 * 111.03475 * 295.32605 * 8 6 5 10 10 C 1.51162 * 104.69227 * 217.36432 * 9 8 6 11 11 C 1.30526 * 111.12320 * 16.38459 * 10 9 8 12 12 C 1.51099 * 111.10262 * 0.03122 * 11 10 9 13 13 C 1.48311 * 104.39204 * 320.47468 * 5 4 2 14 14 C 1.54288 * 110.34378 * 122.22885 * 2 1 3 15 15 H 1.08998 * 110.34121 * 359.89864 * 14 2 1 16 16 N 1.46498 * 110.34321 * 237.74012 * 14 2 1 17 17 C 1.36943 * 119.99752 * 156.19746 * 16 14 2 18 18 H 1.08002 * 119.99793 * 0.27665 * 17 16 14 19 19 C 1.38811 * 120.00012 * 180.27737 * 17 16 14 20 20 N 1.31624 * 119.99698 * 0.02562 * 19 17 16 21 21 Si 1.86795 * 120.00072 * 180.02562 * 19 17 16 22 22 H 1.48495 * 109.47159 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.47290 * 120.00044 * 21 19 17 24 24 H 1.48503 * 109.47163 * 240.00049 * 21 19 17 25 25 H 1.09002 * 109.47253 * 297.76695 * 1 2 3 26 26 H 1.08997 * 109.46986 * 57.77053 * 1 2 3 27 27 H 1.09005 * 109.47306 * 177.77242 * 1 2 3 28 28 H 1.09001 * 109.47313 * 182.23215 * 3 2 1 29 29 H 1.09005 * 109.47160 * 302.23130 * 3 2 1 30 30 H 1.09001 * 109.47526 * 62.22761 * 3 2 1 31 31 H 1.09000 * 110.40965 * 23.77339 * 4 2 1 32 32 H 1.08995 * 110.40806 * 146.09591 * 4 2 1 33 33 H 1.08997 * 110.91478 * 59.29417 * 8 6 5 34 34 H 1.09003 * 110.38426 * 336.15324 * 9 8 6 35 35 H 1.09001 * 110.38261 * 98.52215 * 9 8 6 36 36 H 1.08008 * 124.42597 * 196.42453 * 10 9 8 37 37 H 1.07997 * 124.44623 * 180.02562 * 11 10 9 38 38 H 1.08998 * 110.38700 * 224.75122 * 12 11 10 39 39 H 1.09002 * 110.38968 * 102.37719 * 12 11 10 40 40 H 1.09008 * 110.38448 * 280.72980 * 13 5 4 41 41 H 1.08997 * 110.51196 * 158.25217 * 13 5 4 42 42 H 0.97001 * 120.00384 * 336.48102 * 16 14 2 43 43 H 0.96999 * 119.99739 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0630 1.4341 0.0000 4 6 2.0667 -0.7720 -1.2245 5 7 2.3139 -2.1438 -0.7226 6 6 2.0775 -3.3105 -1.3545 7 8 1.6056 -3.3103 -2.4718 8 6 2.3985 -4.6155 -0.6724 9 6 3.9195 -4.7568 -0.4321 10 6 4.2108 -6.2209 -0.6696 11 6 3.2312 -6.7973 -1.3113 12 6 2.1233 -5.8142 -1.6098 13 6 2.8795 -1.9438 0.6337 14 6 2.0664 -0.7715 1.2237 15 1 1.2398 -1.1489 1.8258 16 7 2.9309 0.0924 2.0315 17 6 3.1203 -0.1788 3.3604 18 1 2.6359 -1.0320 3.8118 19 6 3.9348 0.6431 4.1272 20 7 4.5247 1.6832 3.5771 21 14 4.1938 0.2729 5.9397 22 1 3.4264 -0.9429 6.3112 23 1 5.6384 0.0435 6.1967 24 1 3.7231 1.4234 6.7521 25 1 -0.3634 0.4788 0.9093 26 1 -0.3633 0.5481 -0.8693 27 1 -0.3634 -1.0269 -0.0399 28 1 3.1521 1.4170 -0.0400 29 1 1.6758 1.9657 -0.8693 30 1 1.7408 1.9416 0.9093 31 1 1.3223 -0.7871 -2.0205 32 1 2.9938 -0.3229 -1.5805 33 1 1.8441 -4.7133 0.2610 34 1 4.4745 -4.1397 -1.1387 35 1 4.1693 -4.4804 0.5923 36 1 5.1113 -6.7241 -0.3495 37 1 3.2148 -7.8400 -1.5922 38 1 1.1526 -6.2564 -1.3857 39 1 2.1662 -5.4987 -2.6522 40 1 3.9352 -1.6798 0.5698 41 1 2.7472 -2.8406 1.2388 42 1 3.3658 0.8588 1.6261 43 1 5.0942 2.2573 4.1128 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000995603164.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:02:21 Heat of formation + Delta-G solvation = -17.431497 kcal Electronic energy + Delta-G solvation = -22598.117811 eV Core-core repulsion = 19450.150766 eV Total energy + Delta-G solvation = -3147.967045 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.57043 -39.93015 -38.27743 -35.84101 -34.61641 -32.64476 -30.76323 -29.17661 -29.13315 -28.24801 -27.18774 -25.70583 -23.61799 -22.47123 -20.21619 -19.81167 -19.61099 -19.15777 -18.11896 -17.15433 -17.07035 -16.58140 -16.19796 -15.66265 -15.38659 -15.08319 -14.94475 -14.35392 -13.96429 -13.81342 -13.64995 -13.25518 -13.13804 -13.07811 -12.94895 -12.84027 -12.76158 -12.66010 -12.46824 -12.24053 -12.09299 -12.05941 -11.97951 -11.85862 -11.45156 -11.32406 -10.96306 -10.84862 -9.82954 -9.75564 -8.97221 -7.90826 -5.18830 1.35728 1.50668 1.52463 1.55617 1.60901 1.93267 2.59653 3.32413 3.42091 3.54460 3.65111 3.77327 3.87530 3.90989 4.11835 4.17255 4.35136 4.36679 4.41836 4.54398 4.57579 4.64816 4.75259 4.75947 4.78002 4.85041 4.86839 4.92513 4.99067 5.02041 5.05824 5.09631 5.16074 5.20443 5.34056 5.43506 5.51916 5.59405 5.61550 5.99172 6.31420 6.55954 7.08762 7.39835 8.13046 8.37625 9.32487 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.016510 B = 0.005355 C = 0.004305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1695.550045 B = 5227.115058 C = 6502.072246 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.081 4.081 3 C -0.122 4.122 4 C 0.117 3.883 5 N -0.613 5.613 6 C 0.540 3.460 7 O -0.584 6.584 8 C -0.111 4.111 9 C -0.090 4.090 10 C -0.171 4.171 11 C -0.162 4.162 12 C -0.086 4.086 13 C 0.092 3.908 14 C 0.168 3.832 15 H 0.059 0.941 16 N -0.725 5.725 17 C -0.237 4.237 18 H 0.078 0.922 19 C -0.068 4.068 20 N -0.966 5.966 21 Si 0.964 3.036 22 H -0.266 1.266 23 H -0.297 1.297 24 H -0.298 1.298 25 H 0.054 0.946 26 H 0.070 0.930 27 H 0.050 0.950 28 H 0.045 0.955 29 H 0.072 0.928 30 H 0.049 0.951 31 H 0.080 0.920 32 H 0.069 0.931 33 H 0.116 0.884 34 H 0.064 0.936 35 H 0.084 0.916 36 H 0.145 0.855 37 H 0.149 0.851 38 H 0.084 0.916 39 H 0.073 0.927 40 H 0.063 0.937 41 H 0.084 0.916 42 H 0.383 0.617 43 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.522 -12.066 -8.590 15.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.082 4.082 3 C -0.180 4.180 4 C -0.006 4.006 5 N -0.345 5.345 6 C 0.330 3.670 7 O -0.465 6.465 8 C -0.132 4.132 9 C -0.127 4.127 10 C -0.188 4.188 11 C -0.180 4.180 12 C -0.124 4.124 13 C -0.034 4.034 14 C 0.057 3.943 15 H 0.077 0.923 16 N -0.368 5.368 17 C -0.369 4.369 18 H 0.096 0.904 19 C -0.261 4.261 20 N -0.617 5.617 21 Si 0.795 3.205 22 H -0.190 1.190 23 H -0.224 1.224 24 H -0.226 1.226 25 H 0.073 0.927 26 H 0.088 0.912 27 H 0.070 0.930 28 H 0.064 0.936 29 H 0.091 0.909 30 H 0.068 0.932 31 H 0.099 0.901 32 H 0.088 0.912 33 H 0.134 0.866 34 H 0.083 0.917 35 H 0.102 0.898 36 H 0.163 0.837 37 H 0.167 0.833 38 H 0.103 0.897 39 H 0.092 0.908 40 H 0.081 0.919 41 H 0.102 0.898 42 H 0.220 0.780 43 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -4.808 -12.225 -9.044 15.949 hybrid contribution 0.652 0.564 1.005 1.323 sum -4.156 -11.662 -8.039 14.761 Atomic orbital electron populations 1.21733 0.92650 1.01523 1.02261 1.21682 0.96842 0.95661 0.94044 1.21573 1.00149 0.94501 1.01751 1.22423 1.00692 0.81007 0.96438 1.49040 1.61929 1.05441 1.18119 1.20468 0.76645 0.84778 0.85106 1.90634 1.47369 1.87557 1.20904 1.22163 0.99103 0.91287 1.00684 1.21347 0.92560 0.96189 1.02603 1.23383 1.00193 0.94655 1.00600 1.23440 0.95443 0.99902 0.99207 1.21272 0.99311 0.92458 0.99342 1.23369 0.98081 1.00561 0.81383 1.21301 0.92064 0.89957 0.90961 0.92312 1.42856 1.55425 1.31709 1.06775 1.19661 1.22155 1.08237 0.86847 0.90446 1.25418 1.00914 0.97994 1.01737 1.69802 1.36754 1.18697 1.36458 0.85205 0.76959 0.77320 0.81055 1.18993 1.22432 1.22594 0.92665 0.91151 0.93049 0.93572 0.90943 0.93238 0.90135 0.91236 0.86571 0.91730 0.89767 0.83691 0.83309 0.89743 0.90836 0.91878 0.89809 0.78033 0.94150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.34 8.24 71.98 0.59 -2.75 16 2 C -0.08 -2.46 1.03 -51.28 -0.05 -2.52 16 3 C -0.12 -3.88 7.11 71.98 0.51 -3.37 16 4 C 0.12 3.48 6.15 86.53 0.53 4.01 16 5 N -0.61 -18.64 3.32 -807.52 -2.68 -21.32 16 6 C 0.54 16.61 7.17 87.66 0.63 17.24 16 7 O -0.58 -21.36 15.80 -3.02 -0.05 -21.41 16 8 C -0.11 -2.71 2.72 -10.42 -0.03 -2.74 16 9 C -0.09 -2.03 5.55 30.55 0.17 -1.87 16 10 C -0.17 -3.23 10.78 26.28 0.28 -2.95 16 11 C -0.16 -2.96 10.78 26.26 0.28 -2.67 16 12 C -0.09 -1.92 6.16 30.53 0.19 -1.73 16 13 C 0.09 2.93 5.95 86.50 0.51 3.44 16 14 C 0.17 6.02 3.33 45.90 0.15 6.18 16 15 H 0.06 2.16 7.67 -2.39 -0.02 2.14 16 16 N -0.73 -33.00 4.61 -318.65 -1.47 -34.47 16 17 C -0.24 -12.09 9.96 84.03 0.84 -11.25 16 18 H 0.08 3.78 7.83 -2.91 -0.02 3.75 16 19 C -0.07 -3.67 5.50 84.86 0.47 -3.20 16 20 N -0.97 -56.06 13.06 21.65 0.28 -55.78 16 21 Si 0.96 43.91 29.55 68.60 2.03 45.94 16 22 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 23 H -0.30 -13.66 7.11 99.48 0.71 -12.96 16 24 H -0.30 -13.81 7.11 99.48 0.71 -13.11 16 25 H 0.05 1.54 8.14 -2.39 -0.02 1.52 16 26 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 27 H 0.05 1.37 8.14 -2.38 -0.02 1.35 16 28 H 0.05 1.60 6.95 -2.39 -0.02 1.59 16 29 H 0.07 1.88 8.14 -2.38 -0.02 1.86 16 30 H 0.05 1.81 7.74 -2.39 -0.02 1.79 16 31 H 0.08 2.35 7.60 -2.39 -0.02 2.33 16 32 H 0.07 2.06 7.83 -2.39 -0.02 2.04 16 33 H 0.12 2.56 7.96 -2.39 -0.02 2.54 16 34 H 0.06 1.63 7.88 -2.39 -0.02 1.62 16 35 H 0.08 1.86 7.63 -2.39 -0.02 1.84 16 36 H 0.15 2.17 8.06 -2.91 -0.02 2.15 16 37 H 0.15 1.98 8.06 -2.91 -0.02 1.96 16 38 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 39 H 0.07 1.93 7.01 -2.39 -0.02 1.92 16 40 H 0.06 2.23 8.06 -2.38 -0.02 2.21 16 41 H 0.08 2.44 6.78 -2.39 -0.02 2.43 16 42 H 0.38 18.67 5.05 -92.71 -0.47 18.21 16 43 H 0.25 14.18 8.31 -92.71 -0.77 13.41 16 Total: -1.00 -61.69 339.20 3.71 -57.97 By element: Atomic # 1 Polarization: 32.71 SS G_CDS: 0.52 Total: 33.23 kcal Atomic # 6 Polarization: -9.25 SS G_CDS: 5.08 Total: -4.17 kcal Atomic # 7 Polarization: -107.70 SS G_CDS: -3.86 Total: -111.57 kcal Atomic # 8 Polarization: -21.36 SS G_CDS: -0.05 Total: -21.41 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Total: -61.69 3.71 -57.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000995603164.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.543 kcal (2) G-P(sol) polarization free energy of solvation -61.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.974 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds