Wall clock time and date at job start Tue Mar 31 2020 00:02:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52991 * 110.77770 * 2 1 4 4 C 1.54326 * 110.71917 * 123.23799 * 2 1 3 5 5 N 1.47022 * 107.27229 * 140.55646 * 4 2 1 6 6 C 1.34779 * 125.64773 * 181.01830 * 5 4 2 7 7 O 1.21272 * 119.99951 * 0.02562 * 6 5 4 8 8 C 1.50701 * 119.99508 * 180.02562 * 6 5 4 9 9 C 1.54803 * 111.24939 * 292.05346 * 8 6 5 10 10 C 1.51101 * 104.64610 * 266.87774 * 9 8 6 11 11 C 1.30525 * 111.10317 * 343.19479 * 10 9 8 12 12 C 1.51099 * 111.10506 * 0.25074 * 11 10 9 13 13 C 1.47425 * 108.69841 * 1.28683 * 5 4 2 14 14 C 1.55124 * 104.72702 * 335.55099 * 13 5 4 15 15 H 1.08999 * 111.22285 * 279.18149 * 14 13 5 16 16 N 1.46497 * 110.90834 * 155.27484 * 14 13 5 17 17 C 1.36938 * 119.99915 * 92.97424 * 16 14 13 18 18 H 1.08004 * 119.99654 * 0.02562 * 17 16 14 19 19 C 1.38807 * 120.00313 * 179.97438 * 17 16 14 20 20 N 1.31628 * 119.99780 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00374 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47008 * 60.00339 * 21 19 17 23 23 H 1.48497 * 109.47173 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.46894 * 300.00222 * 21 19 17 25 25 H 1.08997 * 109.46955 * 298.21428 * 1 2 3 26 26 H 1.08999 * 109.46840 * 58.21805 * 1 2 3 27 27 H 1.09004 * 109.46694 * 178.21640 * 1 2 3 28 28 H 1.09002 * 109.47317 * 181.78566 * 3 2 1 29 29 H 1.09001 * 109.47284 * 301.78398 * 3 2 1 30 30 H 1.09002 * 109.47187 * 61.78580 * 3 2 1 31 31 H 1.09007 * 109.88223 * 21.13724 * 4 2 1 32 32 H 1.08999 * 109.88197 * 259.97657 * 4 2 1 33 33 H 1.08994 * 110.94430 * 56.01554 * 8 6 5 34 34 H 1.08996 * 110.52635 * 148.03722 * 9 8 6 35 35 H 1.08993 * 110.32219 * 25.61043 * 9 8 6 36 36 H 1.08002 * 124.45105 * 163.47011 * 10 9 8 37 37 H 1.08000 * 124.44848 * 180.26224 * 11 10 9 38 38 H 1.08999 * 110.39225 * 135.24698 * 12 11 10 39 39 H 1.09001 * 110.38605 * 257.50906 * 12 11 10 40 40 H 1.08998 * 110.36689 * 94.48561 * 13 5 4 41 41 H 1.09004 * 110.36445 * 216.80175 * 13 5 4 42 42 H 0.96997 * 120.00542 * 272.98099 * 16 14 13 43 43 H 0.97001 * 119.99930 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0728 1.4304 0.0000 4 6 2.0761 -0.7912 1.2073 5 7 3.2445 -1.5507 0.7391 6 6 3.9924 -2.3835 1.4899 7 8 3.7193 -2.5563 2.6588 8 6 5.1679 -3.1000 0.8768 9 6 4.7053 -4.1484 -0.1640 10 6 4.5979 -5.4386 0.6151 11 6 5.2389 -5.3575 1.7493 12 6 5.8755 -3.9976 1.9184 13 6 3.4666 -1.2455 -0.6860 14 6 2.0790 -0.7955 -1.2138 15 1 1.4449 -1.6533 -1.4378 16 7 2.2215 0.0695 -2.3874 17 6 2.1869 -0.4714 -3.6450 18 1 2.0541 -1.5358 -3.7714 19 6 2.3214 0.3482 -4.7571 20 7 2.4826 1.6454 -4.6029 21 14 2.2734 -0.3897 -6.4725 22 1 0.9697 -1.0688 -6.6830 23 1 2.4374 0.6888 -7.4800 24 1 3.3743 -1.3755 -6.6182 25 1 -0.3633 0.4858 0.9055 26 1 -0.3633 0.5413 -0.8736 27 1 -0.3633 -1.0272 -0.0320 28 1 3.1621 1.4058 -0.0320 29 1 1.6956 1.9622 -0.8736 30 1 1.7474 1.9425 0.9056 31 1 1.3129 -1.4758 1.5776 32 1 2.3741 -0.1024 1.9978 33 1 5.8666 -2.3920 0.4313 34 1 5.4421 -4.2464 -0.9612 35 1 3.7346 -3.8711 -0.5749 36 1 4.0649 -6.3146 0.2760 37 1 5.3057 -6.1574 2.4718 38 1 5.7018 -3.6196 2.9259 39 1 6.9446 -4.0506 1.7126 40 1 4.1947 -0.4415 -0.7928 41 1 3.8032 -2.1362 -1.2167 42 1 2.3405 1.0255 -2.2739 43 1 2.5762 2.2183 -5.3801 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000995603167.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:02:24 Heat of formation + Delta-G solvation = -6.502125 kcal Electronic energy + Delta-G solvation = -22679.566708 eV Core-core repulsion = 19532.073597 eV Total energy + Delta-G solvation = -3147.493111 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.41539 -38.68378 -36.95096 -34.15323 -33.19070 -30.84411 -29.63355 -28.19627 -27.54402 -27.01575 -26.05801 -23.97543 -22.31554 -21.06461 -18.96099 -18.72931 -18.39563 -17.34066 -16.83790 -16.14995 -15.81758 -15.22283 -14.46342 -14.16916 -13.98367 -13.70094 -13.19032 -12.92210 -12.87125 -12.60397 -12.43452 -12.32009 -11.95009 -11.81807 -11.55735 -11.46512 -11.29831 -11.27456 -11.11104 -11.00647 -10.92023 -10.54795 -10.47348 -10.26732 -9.90471 -9.73750 -9.58438 -9.02524 -8.87487 -8.30154 -7.10357 -5.88067 -3.18285 2.26982 2.85737 3.24966 3.37567 3.43107 3.43435 4.48125 4.51844 4.61939 4.66911 4.95456 5.08936 5.18459 5.23737 5.28238 5.48466 5.59262 5.61929 5.64345 5.69800 5.73291 5.79550 5.83462 5.90911 5.92178 6.00516 6.02125 6.10355 6.14306 6.22882 6.32771 6.34902 6.42821 6.52004 6.57681 6.67436 6.72089 6.87462 6.88226 7.60151 7.84283 8.29996 8.42133 9.42327 9.96357 10.31694 11.33915 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.017014 B = 0.005411 C = 0.004426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.347600 B = 5172.944407 C = 6324.398529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.088 4.088 3 C -0.134 4.134 4 C 0.121 3.879 5 N -0.610 5.610 6 C 0.537 3.463 7 O -0.552 6.552 8 C -0.113 4.113 9 C -0.092 4.092 10 C -0.172 4.172 11 C -0.158 4.158 12 C -0.087 4.087 13 C 0.068 3.932 14 C 0.181 3.819 15 H 0.068 0.932 16 N -0.709 5.709 17 C -0.249 4.249 18 H 0.071 0.929 19 C -0.007 4.007 20 N -0.930 5.930 21 Si 0.907 3.093 22 H -0.285 1.285 23 H -0.291 1.291 24 H -0.285 1.285 25 H 0.049 0.951 26 H 0.067 0.933 27 H 0.052 0.948 28 H 0.055 0.945 29 H 0.072 0.928 30 H 0.048 0.952 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.104 0.896 34 H 0.087 0.913 35 H 0.080 0.920 36 H 0.124 0.876 37 H 0.123 0.877 38 H 0.087 0.913 39 H 0.079 0.921 40 H 0.069 0.931 41 H 0.074 0.926 42 H 0.390 0.610 43 H 0.257 0.743 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.074 -7.790 10.396 13.349 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.090 4.090 3 C -0.191 4.191 4 C -0.002 4.002 5 N -0.344 5.344 6 C 0.325 3.675 7 O -0.431 6.431 8 C -0.134 4.134 9 C -0.129 4.129 10 C -0.190 4.190 11 C -0.176 4.176 12 C -0.124 4.124 13 C -0.058 4.058 14 C 0.069 3.931 15 H 0.086 0.914 16 N -0.351 5.351 17 C -0.379 4.379 18 H 0.089 0.911 19 C -0.203 4.203 20 N -0.577 5.577 21 Si 0.738 3.262 22 H -0.212 1.212 23 H -0.217 1.217 24 H -0.212 1.212 25 H 0.068 0.932 26 H 0.086 0.914 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.091 0.909 30 H 0.067 0.933 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.122 0.878 34 H 0.105 0.895 35 H 0.099 0.901 36 H 0.142 0.858 37 H 0.140 0.860 38 H 0.105 0.895 39 H 0.097 0.903 40 H 0.087 0.913 41 H 0.092 0.908 42 H 0.227 0.773 43 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 2.953 -7.975 10.853 13.788 hybrid contribution 0.114 -0.082 -1.051 1.060 sum 3.067 -8.056 9.802 13.053 Atomic orbital electron populations 1.21681 0.93466 1.01647 1.01798 1.21883 0.96047 0.96006 0.95040 1.21710 1.00955 0.94700 1.01733 1.22021 0.87460 0.94174 0.96585 1.48459 1.29657 1.43714 1.12521 1.20000 0.83328 0.78449 0.85718 1.90633 1.71164 1.64592 1.16662 1.22129 0.96044 0.97640 0.97614 1.21436 1.02587 0.91715 0.97148 1.23239 1.00518 0.98601 0.96666 1.23211 0.98873 0.97956 0.97563 1.21284 0.98692 0.92281 1.00180 1.23661 1.02547 1.00836 0.78783 1.21374 0.91736 0.93399 0.86626 0.91422 1.42437 1.86101 1.06554 0.99962 1.19209 1.42862 0.92652 0.83223 0.91109 1.24738 1.02286 0.95414 0.97900 1.69645 1.55929 1.02708 1.29448 0.86279 0.77899 0.77799 0.84248 1.21190 1.21662 1.21179 0.93225 0.91392 0.92895 0.92638 0.90941 0.93302 0.91856 0.92014 0.87793 0.89507 0.90150 0.85838 0.85953 0.89489 0.90256 0.91320 0.90807 0.77346 0.93286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.86 8.49 37.16 0.32 -1.55 16 2 C -0.09 -1.38 0.85 -152.67 -0.13 -1.51 16 3 C -0.13 -2.10 7.54 37.15 0.28 -1.82 16 4 C 0.12 1.86 6.04 -3.06 -0.02 1.84 16 5 N -0.61 -9.77 3.31 -170.38 -0.56 -10.33 16 6 C 0.54 8.74 7.15 -10.98 -0.08 8.66 16 7 O -0.55 -10.52 15.86 5.56 0.09 -10.43 16 8 C -0.11 -1.49 2.87 -89.96 -0.26 -1.75 16 9 C -0.09 -1.13 5.46 -26.74 -0.15 -1.28 16 10 C -0.17 -2.04 10.77 -35.70 -0.38 -2.42 16 11 C -0.16 -1.85 10.77 -35.70 -0.38 -2.23 16 12 C -0.09 -1.05 6.15 -26.83 -0.16 -1.21 16 13 C 0.07 1.12 5.87 -2.41 -0.01 1.11 16 14 C 0.18 3.32 2.97 -65.67 -0.20 3.13 16 15 H 0.07 1.28 7.99 -51.93 -0.41 0.87 16 16 N -0.71 -16.07 5.15 -51.24 -0.26 -16.34 16 17 C -0.25 -6.36 9.96 -15.06 -0.15 -6.51 16 18 H 0.07 1.76 7.83 -52.48 -0.41 1.35 16 19 C -0.01 -0.18 5.50 -17.43 -0.10 -0.28 16 20 N -0.93 -26.42 13.06 55.49 0.72 -25.70 16 21 Si 0.91 21.24 29.55 -169.99 -5.02 16.22 16 22 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 23 H -0.29 -6.93 7.11 56.52 0.40 -6.52 16 24 H -0.29 -6.58 7.11 56.52 0.40 -6.18 16 25 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 27 H 0.05 0.73 8.13 -51.93 -0.42 0.31 16 28 H 0.05 0.90 7.42 -51.93 -0.39 0.51 16 29 H 0.07 1.27 6.75 -51.93 -0.35 0.92 16 30 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.97 7.82 -51.93 -0.41 0.57 16 32 H 0.06 0.94 7.84 -51.93 -0.41 0.54 16 33 H 0.10 1.25 8.14 -51.93 -0.42 0.82 16 34 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 35 H 0.08 1.08 6.32 -51.93 -0.33 0.76 16 36 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 37 H 0.12 1.22 8.06 -52.49 -0.42 0.80 16 38 H 0.09 1.17 7.01 -51.93 -0.36 0.80 16 39 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.07 1.21 7.69 -51.93 -0.40 0.81 16 41 H 0.07 1.18 5.53 -51.93 -0.29 0.90 16 42 H 0.39 9.35 5.45 -40.82 -0.22 9.13 16 43 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 337.69 15.07 5.09 5.09 Total: -1.00 -29.19 337.69 -8.29 -37.47 By element: Atomic # 1 Polarization: 16.74 SS G_CDS: -6.92 Total: 9.82 kcal Atomic # 6 Polarization: -4.38 SS G_CDS: -1.42 Total: -5.81 kcal Atomic # 7 Polarization: -52.27 SS G_CDS: -0.10 Total: -52.37 kcal Atomic # 8 Polarization: -10.52 SS G_CDS: 0.09 Total: -10.43 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -5.02 Total: 16.22 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -29.19 -8.29 -37.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000995603167.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.972 kcal (2) G-P(sol) polarization free energy of solvation -29.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.289 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.474 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds