Wall clock time and date at job start Tue Mar 31 2020 00:02:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52991 * 110.77770 * 2 1 4 4 C 1.54326 * 110.71917 * 123.23799 * 2 1 3 5 5 N 1.47022 * 107.27229 * 140.55646 * 4 2 1 6 6 C 1.34779 * 125.64773 * 181.01830 * 5 4 2 7 7 O 1.21272 * 119.99951 * 0.02562 * 6 5 4 8 8 C 1.50701 * 119.99508 * 180.02562 * 6 5 4 9 9 C 1.54803 * 111.24939 * 292.05346 * 8 6 5 10 10 C 1.51101 * 104.64610 * 266.87774 * 9 8 6 11 11 C 1.30525 * 111.10317 * 343.19479 * 10 9 8 12 12 C 1.51099 * 111.10506 * 0.25074 * 11 10 9 13 13 C 1.47425 * 108.69841 * 1.28683 * 5 4 2 14 14 C 1.55124 * 104.72702 * 335.55099 * 13 5 4 15 15 H 1.08999 * 111.22285 * 279.18149 * 14 13 5 16 16 N 1.46497 * 110.90834 * 155.27484 * 14 13 5 17 17 C 1.36938 * 119.99915 * 92.97424 * 16 14 13 18 18 H 1.08004 * 119.99654 * 0.02562 * 17 16 14 19 19 C 1.38807 * 120.00313 * 179.97438 * 17 16 14 20 20 N 1.31628 * 119.99780 * 0.02562 * 19 17 16 21 21 Si 1.86802 * 120.00374 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.47008 * 60.00339 * 21 19 17 23 23 H 1.48497 * 109.47173 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.46894 * 300.00222 * 21 19 17 25 25 H 1.08997 * 109.46955 * 298.21428 * 1 2 3 26 26 H 1.08999 * 109.46840 * 58.21805 * 1 2 3 27 27 H 1.09004 * 109.46694 * 178.21640 * 1 2 3 28 28 H 1.09002 * 109.47317 * 181.78566 * 3 2 1 29 29 H 1.09001 * 109.47284 * 301.78398 * 3 2 1 30 30 H 1.09002 * 109.47187 * 61.78580 * 3 2 1 31 31 H 1.09007 * 109.88223 * 21.13724 * 4 2 1 32 32 H 1.08999 * 109.88197 * 259.97657 * 4 2 1 33 33 H 1.08994 * 110.94430 * 56.01554 * 8 6 5 34 34 H 1.08996 * 110.52635 * 148.03722 * 9 8 6 35 35 H 1.08993 * 110.32219 * 25.61043 * 9 8 6 36 36 H 1.08002 * 124.45105 * 163.47011 * 10 9 8 37 37 H 1.08000 * 124.44848 * 180.26224 * 11 10 9 38 38 H 1.08999 * 110.39225 * 135.24698 * 12 11 10 39 39 H 1.09001 * 110.38605 * 257.50906 * 12 11 10 40 40 H 1.08998 * 110.36689 * 94.48561 * 13 5 4 41 41 H 1.09004 * 110.36445 * 216.80175 * 13 5 4 42 42 H 0.96997 * 120.00542 * 272.98099 * 16 14 13 43 43 H 0.97001 * 119.99930 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0728 1.4304 0.0000 4 6 2.0761 -0.7912 1.2073 5 7 3.2445 -1.5507 0.7391 6 6 3.9924 -2.3835 1.4899 7 8 3.7193 -2.5563 2.6588 8 6 5.1679 -3.1000 0.8768 9 6 4.7053 -4.1484 -0.1640 10 6 4.5979 -5.4386 0.6151 11 6 5.2389 -5.3575 1.7493 12 6 5.8755 -3.9976 1.9184 13 6 3.4666 -1.2455 -0.6860 14 6 2.0790 -0.7955 -1.2138 15 1 1.4449 -1.6533 -1.4378 16 7 2.2215 0.0695 -2.3874 17 6 2.1869 -0.4714 -3.6450 18 1 2.0541 -1.5358 -3.7714 19 6 2.3214 0.3482 -4.7571 20 7 2.4826 1.6454 -4.6029 21 14 2.2734 -0.3897 -6.4725 22 1 0.9697 -1.0688 -6.6830 23 1 2.4374 0.6888 -7.4800 24 1 3.3743 -1.3755 -6.6182 25 1 -0.3633 0.4858 0.9055 26 1 -0.3633 0.5413 -0.8736 27 1 -0.3633 -1.0272 -0.0320 28 1 3.1621 1.4058 -0.0320 29 1 1.6956 1.9622 -0.8736 30 1 1.7474 1.9425 0.9056 31 1 1.3129 -1.4758 1.5776 32 1 2.3741 -0.1024 1.9978 33 1 5.8666 -2.3920 0.4313 34 1 5.4421 -4.2464 -0.9612 35 1 3.7346 -3.8711 -0.5749 36 1 4.0649 -6.3146 0.2760 37 1 5.3057 -6.1574 2.4718 38 1 5.7018 -3.6196 2.9259 39 1 6.9446 -4.0506 1.7126 40 1 4.1947 -0.4415 -0.7928 41 1 3.8032 -2.1362 -1.2167 42 1 2.3405 1.0255 -2.2739 43 1 2.5762 2.2183 -5.3801 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000995603167.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:02:24 Heat of formation + Delta-G solvation = -22.727779 kcal Electronic energy + Delta-G solvation = -22680.270305 eV Core-core repulsion = 19532.073597 eV Total energy + Delta-G solvation = -3148.196709 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.67047 -39.92802 -38.14247 -35.86131 -34.62956 -32.64661 -30.66429 -29.18942 -29.08475 -28.28904 -27.27115 -25.79882 -23.61451 -22.38583 -20.21939 -19.83333 -19.58805 -19.17388 -18.05573 -17.23315 -17.07830 -16.72761 -16.07939 -15.69014 -15.41359 -15.00492 -14.66583 -14.40032 -14.14522 -13.92079 -13.54524 -13.45212 -13.21505 -13.03336 -12.87269 -12.80778 -12.76557 -12.59092 -12.46932 -12.24976 -12.13147 -12.05457 -12.02617 -11.83963 -11.52503 -11.31318 -10.95044 -10.81939 -9.79981 -9.66269 -8.98976 -7.91078 -5.19717 1.37778 1.52579 1.53393 1.58523 1.59488 1.98212 2.59732 3.34707 3.40557 3.54980 3.65737 3.73246 3.82803 3.88501 4.14199 4.28631 4.30756 4.36113 4.42392 4.44768 4.62391 4.66926 4.72893 4.78922 4.82261 4.83260 4.86623 4.94263 4.98211 5.02705 5.05617 5.16621 5.18818 5.19576 5.34391 5.43009 5.49962 5.57895 5.62175 5.98997 6.30187 6.53108 7.12589 7.38991 8.10971 8.36316 9.31609 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.017014 B = 0.005411 C = 0.004426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1645.347600 B = 5172.944407 C = 6324.398529 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.080 4.080 3 C -0.127 4.127 4 C 0.122 3.878 5 N -0.610 5.610 6 C 0.533 3.467 7 O -0.581 6.581 8 C -0.115 4.115 9 C -0.090 4.090 10 C -0.182 4.182 11 C -0.164 4.164 12 C -0.086 4.086 13 C 0.082 3.918 14 C 0.174 3.826 15 H 0.063 0.937 16 N -0.718 5.718 17 C -0.241 4.241 18 H 0.077 0.923 19 C -0.066 4.066 20 N -0.966 5.966 21 Si 0.966 3.034 22 H -0.281 1.281 23 H -0.300 1.300 24 H -0.278 1.278 25 H 0.073 0.927 26 H 0.048 0.952 27 H 0.058 0.942 28 H 0.046 0.954 29 H 0.050 0.950 30 H 0.073 0.927 31 H 0.068 0.932 32 H 0.067 0.933 33 H 0.117 0.883 34 H 0.102 0.898 35 H 0.066 0.934 36 H 0.137 0.863 37 H 0.138 0.862 38 H 0.071 0.929 39 H 0.103 0.897 40 H 0.060 0.940 41 H 0.082 0.918 42 H 0.382 0.618 43 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.390 -9.224 10.971 14.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.081 4.081 3 C -0.185 4.185 4 C -0.001 4.001 5 N -0.342 5.342 6 C 0.323 3.677 7 O -0.462 6.462 8 C -0.136 4.136 9 C -0.128 4.128 10 C -0.199 4.199 11 C -0.181 4.181 12 C -0.123 4.123 13 C -0.043 4.043 14 C 0.063 3.937 15 H 0.081 0.919 16 N -0.359 5.359 17 C -0.373 4.373 18 H 0.095 0.905 19 C -0.259 4.259 20 N -0.616 5.616 21 Si 0.795 3.205 22 H -0.207 1.207 23 H -0.226 1.226 24 H -0.204 1.204 25 H 0.092 0.908 26 H 0.068 0.932 27 H 0.077 0.923 28 H 0.065 0.935 29 H 0.069 0.931 30 H 0.092 0.908 31 H 0.086 0.914 32 H 0.085 0.915 33 H 0.135 0.865 34 H 0.120 0.880 35 H 0.085 0.915 36 H 0.155 0.845 37 H 0.156 0.844 38 H 0.089 0.911 39 H 0.121 0.879 40 H 0.078 0.922 41 H 0.100 0.900 42 H 0.217 0.783 43 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 3.265 -9.451 11.456 15.206 hybrid contribution -0.006 0.335 -1.126 1.174 sum 3.259 -9.116 10.331 14.158 Atomic orbital electron populations 1.21649 0.92345 1.02066 1.02133 1.21818 0.96921 0.95642 0.93736 1.21642 1.00284 0.94668 1.01886 1.22030 0.87458 0.94252 0.96331 1.48480 1.29852 1.43757 1.12118 1.20559 0.83733 0.78016 0.85347 1.90618 1.72100 1.65513 1.17932 1.22225 0.95068 0.98083 0.98263 1.21447 1.02264 0.91714 0.97327 1.23401 1.00904 0.98845 0.96792 1.23421 0.98668 0.98173 0.97878 1.21314 1.00038 0.92133 0.98827 1.23331 1.00957 1.00827 0.79233 1.21513 0.92744 0.93084 0.86335 0.91904 1.42522 1.86275 1.06648 1.00440 1.19576 1.40420 0.92915 0.84368 0.90464 1.25427 1.03480 0.95794 1.01163 1.69792 1.58251 1.03853 1.29696 0.85334 0.78063 0.76816 0.80254 1.20710 1.22642 1.20362 0.90834 0.93242 0.92302 0.93501 0.93135 0.90839 0.91410 0.91476 0.86524 0.87959 0.91502 0.84480 0.84378 0.91086 0.87925 0.92158 0.90009 0.78292 0.94079 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.43 8.49 71.98 0.61 -2.82 16 2 C -0.08 -2.42 0.85 -50.99 -0.04 -2.46 16 3 C -0.13 -3.91 7.54 71.98 0.54 -3.37 16 4 C 0.12 3.58 6.04 86.73 0.52 4.10 16 5 N -0.61 -18.73 3.31 -811.35 -2.68 -21.41 16 6 C 0.53 16.70 7.15 87.66 0.63 17.32 16 7 O -0.58 -21.56 15.86 -3.01 -0.05 -21.61 16 8 C -0.12 -2.84 2.87 -10.37 -0.03 -2.87 16 9 C -0.09 -2.05 5.46 30.59 0.17 -1.88 16 10 C -0.18 -3.90 10.77 26.26 0.28 -3.61 16 11 C -0.16 -3.47 10.77 26.26 0.28 -3.18 16 12 C -0.09 -1.90 6.15 30.53 0.19 -1.71 16 13 C 0.08 2.65 5.87 86.93 0.51 3.16 16 14 C 0.17 6.27 2.97 46.46 0.14 6.40 16 15 H 0.06 2.33 7.99 -2.39 -0.02 2.31 16 16 N -0.72 -32.61 5.15 -316.03 -1.63 -34.23 16 17 C -0.24 -12.26 9.96 84.03 0.84 -11.42 16 18 H 0.08 3.76 7.83 -2.91 -0.02 3.73 16 19 C -0.07 -3.54 5.50 84.86 0.47 -3.07 16 20 N -0.97 -55.77 13.06 21.65 0.28 -55.49 16 21 Si 0.97 43.68 29.55 68.60 2.03 45.71 16 22 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 23 H -0.30 -13.90 7.11 99.48 0.71 -13.20 16 24 H -0.28 -12.06 7.11 99.48 0.71 -11.36 16 25 H 0.07 1.67 8.14 -2.39 -0.02 1.65 16 26 H 0.05 1.55 8.14 -2.39 -0.02 1.53 16 27 H 0.06 1.54 8.13 -2.39 -0.02 1.52 16 28 H 0.05 1.50 7.42 -2.39 -0.02 1.48 16 29 H 0.05 1.78 6.75 -2.39 -0.02 1.77 16 30 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 31 H 0.07 1.95 7.82 -2.38 -0.02 1.93 16 32 H 0.07 1.92 7.84 -2.39 -0.02 1.91 16 33 H 0.12 2.56 8.14 -2.39 -0.02 2.54 16 34 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 35 H 0.07 1.70 6.32 -2.39 -0.02 1.68 16 36 H 0.14 2.51 8.06 -2.91 -0.02 2.49 16 37 H 0.14 2.43 8.06 -2.91 -0.02 2.41 16 38 H 0.07 1.82 7.01 -2.39 -0.02 1.80 16 39 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 40 H 0.06 2.08 7.69 -2.39 -0.02 2.06 16 41 H 0.08 2.51 5.53 -2.38 -0.01 2.50 16 42 H 0.38 18.61 5.45 -92.71 -0.51 18.11 16 43 H 0.25 14.22 8.31 -92.71 -0.77 13.45 16 Total: -1.00 -61.74 337.69 3.54 -58.20 By element: Atomic # 1 Polarization: 33.76 SS G_CDS: 0.49 Total: 34.24 kcal Atomic # 6 Polarization: -10.51 SS G_CDS: 5.10 Total: -5.41 kcal Atomic # 7 Polarization: -107.11 SS G_CDS: -4.03 Total: -111.14 kcal Atomic # 8 Polarization: -21.56 SS G_CDS: -0.05 Total: -21.61 kcal Atomic # 14 Polarization: 43.68 SS G_CDS: 2.03 Total: 45.71 kcal Total: -61.74 3.54 -58.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000995603167.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.472 kcal (2) G-P(sol) polarization free energy of solvation -61.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.272 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds