Wall clock time and date at job start Tue Mar 31 2020 00:02:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 110.63938 * 2 1 4 4 C 1.54333 * 110.71880 * 123.13631 * 2 1 3 5 5 N 1.47018 * 107.26981 * 140.55787 * 4 2 1 6 6 C 1.34774 * 125.65141 * 181.02474 * 5 4 2 7 7 O 1.21615 * 119.99827 * 0.02562 * 6 5 4 8 8 C 1.47104 * 120.00400 * 180.02562 * 6 5 4 9 9 C 1.32994 * 119.99796 * 180.02562 * 8 6 5 10 10 C 1.51401 * 136.31960 * 359.62678 * 9 8 6 11 11 C 1.53376 * 87.51798 * 206.05575 * 10 9 8 12 12 C 1.51401 * 136.31366 * 179.97438 * 9 8 6 13 13 C 1.47435 * 108.70282 * 1.28551 * 5 4 2 14 14 C 1.55123 * 104.72068 * 335.55527 * 13 5 4 15 15 H 1.09000 * 110.90382 * 155.27123 * 14 13 5 16 16 N 1.46500 * 111.19440 * 279.18393 * 14 13 5 17 17 C 1.36930 * 120.00346 * 267.19382 * 16 14 13 18 18 H 1.08001 * 120.00050 * 359.97438 * 17 16 14 19 19 C 1.38815 * 119.99940 * 179.97438 * 17 16 14 20 20 N 1.31625 * 119.99913 * 179.97438 * 19 17 16 21 21 Si 1.86798 * 120.00103 * 0.02562 * 19 17 16 22 22 H 1.48497 * 109.47060 * 89.99659 * 21 19 17 23 23 H 1.48496 * 109.46934 * 209.99903 * 21 19 17 24 24 H 1.48500 * 109.46794 * 329.99877 * 21 19 17 25 25 H 1.09004 * 109.46843 * 298.31488 * 1 2 3 26 26 H 1.09000 * 109.46584 * 58.31509 * 1 2 3 27 27 H 1.08995 * 109.46744 * 178.31704 * 1 2 3 28 28 H 1.08998 * 109.47046 * 181.68684 * 3 2 1 29 29 H 1.09001 * 109.47366 * 301.68385 * 3 2 1 30 30 H 1.08998 * 109.47412 * 61.68772 * 3 2 1 31 31 H 1.08994 * 109.87929 * 21.14149 * 4 2 1 32 32 H 1.09002 * 109.88307 * 259.97662 * 4 2 1 33 33 H 1.08000 * 119.99479 * 0.26978 * 8 6 5 34 34 H 1.08998 * 113.56306 * 320.64388 * 10 9 8 35 35 H 1.09006 * 113.56200 * 91.37232 * 10 9 8 36 36 H 1.08999 * 113.96717 * 220.28815 * 11 10 9 37 37 H 1.09006 * 113.59637 * 88.79705 * 11 10 9 38 38 H 1.09006 * 113.56215 * 268.62950 * 12 9 8 39 39 H 1.09004 * 113.56278 * 39.36209 * 12 9 8 40 40 H 1.09005 * 110.36054 * 94.48445 * 13 5 4 41 41 H 1.09001 * 110.36448 * 216.80242 * 13 5 4 42 42 H 0.97002 * 119.99368 * 87.19015 * 16 14 13 43 43 H 0.96999 * 119.99802 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0693 1.4318 0.0000 4 6 2.0760 -0.7891 1.2088 5 7 3.2445 -1.5494 0.7419 6 6 3.9923 -2.3809 1.4940 7 8 3.7184 -2.5522 2.6665 8 6 5.1398 -3.0814 0.8969 9 6 5.8774 -3.9023 1.6391 10 6 5.8816 -4.3707 3.0788 11 6 7.3865 -4.6221 2.9227 12 6 7.0914 -4.7808 1.4229 13 6 3.4666 -1.2467 -0.6839 14 6 2.0790 -0.7976 -1.2123 15 1 2.1851 -0.1555 -2.0867 16 7 1.2272 -1.9514 -1.5111 17 6 1.2023 -2.4748 -2.7761 18 1 1.8103 -2.0368 -3.5538 19 6 0.3955 -3.5685 -3.0590 20 7 0.3711 -4.0713 -4.2752 21 14 -0.6567 -4.3257 -1.7140 22 1 -1.9861 -3.6642 -1.6942 23 1 -0.8296 -5.7766 -1.9788 24 1 0.0092 -4.1381 -0.4001 25 1 -0.3633 0.4875 0.9048 26 1 -0.3632 0.5398 -0.8745 27 1 -0.3632 -1.0272 -0.0302 28 1 3.1587 1.4097 -0.0303 29 1 1.6923 1.9621 -0.8745 30 1 1.7413 1.9436 0.9047 31 1 1.3130 -1.4730 1.5802 32 1 2.3741 -0.0989 1.9980 33 1 5.3856 -2.9259 -0.1432 34 1 5.6448 -3.5830 3.7940 35 1 5.3027 -5.2796 3.2430 36 1 7.7347 -5.5371 3.4021 37 1 8.0010 -3.7540 3.1615 38 1 6.8441 -5.8021 1.1331 39 1 7.8470 -4.3293 0.7799 40 1 4.1948 -0.4428 -0.7920 41 1 3.8032 -2.1383 -1.2129 42 1 0.6809 -2.3446 -0.8126 43 1 -0.1923 -4.8357 -4.4727 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000995655958.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:02:33 Heat of formation + Delta-G solvation = 21.195118 kcal Electronic energy + Delta-G solvation = -22424.369626 eV Core-core repulsion = 19278.077557 eV Total energy + Delta-G solvation = -3146.292069 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.07706 -38.86211 -37.51756 -33.96932 -33.30370 -31.09382 -30.73406 -28.32621 -26.85851 -26.36093 -25.78928 -23.75965 -22.89314 -21.42786 -19.67508 -19.05640 -17.65589 -17.46621 -16.77474 -15.80424 -15.59471 -15.17761 -14.67346 -14.48881 -14.18058 -13.81276 -13.58848 -13.01804 -12.71783 -12.52751 -12.49946 -12.40520 -12.16667 -11.94165 -11.71154 -11.68672 -11.52826 -11.29602 -11.05987 -11.00165 -10.61568 -10.56158 -10.47901 -10.26602 -9.96025 -9.62585 -9.44887 -9.12232 -9.03693 -8.23292 -7.33763 -5.84782 -3.20869 1.51160 3.31717 3.33632 3.38635 3.42373 3.59812 4.34245 4.46391 4.53270 4.66026 4.74001 4.99633 5.02175 5.03687 5.23701 5.29756 5.47446 5.49148 5.57769 5.58429 5.65468 5.68272 5.72118 5.79551 5.85705 5.92658 5.97148 6.06159 6.09722 6.13796 6.14887 6.22120 6.26106 6.29301 6.45712 6.58201 6.64113 6.70407 6.79199 7.89755 7.91149 8.34372 8.52950 9.11735 9.84661 10.03646 11.32992 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.014220 B = 0.005937 C = 0.004804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1968.568919 B = 4715.358685 C = 5826.554601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.094 4.094 3 C -0.130 4.130 4 C 0.122 3.878 5 N -0.602 5.602 6 C 0.564 3.436 7 O -0.557 6.557 8 C -0.183 4.183 9 C -0.074 4.074 10 C -0.104 4.104 11 C -0.142 4.142 12 C -0.107 4.107 13 C 0.068 3.932 14 C 0.184 3.816 15 H 0.083 0.917 16 N -0.733 5.733 17 C -0.248 4.248 18 H 0.093 0.907 19 C 0.012 3.988 20 N -0.930 5.930 21 Si 0.876 3.124 22 H -0.282 1.282 23 H -0.290 1.290 24 H -0.277 1.277 25 H 0.047 0.953 26 H 0.063 0.937 27 H 0.060 0.940 28 H 0.055 0.945 29 H 0.061 0.939 30 H 0.054 0.946 31 H 0.062 0.938 32 H 0.061 0.939 33 H 0.134 0.866 34 H 0.084 0.916 35 H 0.095 0.905 36 H 0.075 0.925 37 H 0.082 0.918 38 H 0.100 0.900 39 H 0.076 0.924 40 H 0.060 0.940 41 H 0.083 0.917 42 H 0.364 0.636 43 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.366 5.765 11.248 16.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.095 4.095 3 C -0.188 4.188 4 C -0.001 4.001 5 N -0.334 5.334 6 C 0.355 3.645 7 O -0.438 6.438 8 C -0.203 4.203 9 C -0.076 4.076 10 C -0.140 4.140 11 C -0.179 4.179 12 C -0.143 4.143 13 C -0.057 4.057 14 C 0.072 3.928 15 H 0.101 0.899 16 N -0.375 5.375 17 C -0.378 4.378 18 H 0.111 0.889 19 C -0.185 4.185 20 N -0.577 5.577 21 Si 0.706 3.294 22 H -0.208 1.208 23 H -0.216 1.216 24 H -0.203 1.203 25 H 0.067 0.933 26 H 0.082 0.918 27 H 0.079 0.921 28 H 0.074 0.926 29 H 0.080 0.920 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.080 0.920 33 H 0.151 0.849 34 H 0.102 0.898 35 H 0.113 0.887 36 H 0.094 0.906 37 H 0.101 0.899 38 H 0.118 0.882 39 H 0.095 0.905 40 H 0.078 0.922 41 H 0.101 0.899 42 H 0.198 0.802 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges 10.265 5.558 11.628 16.477 hybrid contribution -0.779 -0.730 0.690 1.272 sum 9.486 4.828 12.319 16.280 Atomic orbital electron populations 1.21647 0.93135 1.02511 1.01195 1.21975 0.96600 0.95264 0.95682 1.21740 1.00787 0.94489 1.01774 1.21965 0.87767 0.94146 0.96245 1.48228 1.29353 1.43833 1.11961 1.18037 0.82554 0.78556 0.85311 1.90721 1.71757 1.64926 1.16429 1.21653 0.96513 1.02244 0.99916 1.23375 0.93938 0.93363 0.96942 1.22175 0.95462 1.01906 0.94489 1.22723 0.96927 1.02175 0.96108 1.22321 0.95053 0.99573 0.97396 1.23454 1.00913 1.00975 0.80398 1.21352 0.88054 0.88983 0.94395 0.89887 1.42727 1.50687 1.34126 1.09910 1.19054 1.22297 1.10286 0.86161 0.88931 1.24621 0.99670 0.98226 0.95933 1.69690 1.43029 1.26396 1.18545 0.86677 0.81232 0.79132 0.82319 1.20850 1.21625 1.20325 0.93348 0.91750 0.92125 0.92589 0.92038 0.92730 0.91933 0.92026 0.84860 0.89770 0.88687 0.90611 0.89914 0.88216 0.90504 0.92185 0.89855 0.80199 0.92960 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.90 8.15 37.16 0.30 -1.59 16 2 C -0.09 -1.39 0.80 -152.67 -0.12 -1.51 16 3 C -0.13 -1.54 8.44 37.16 0.31 -1.22 16 4 C 0.12 1.97 6.04 -3.06 -0.02 1.95 16 5 N -0.60 -10.41 3.32 -171.76 -0.57 -10.98 16 6 C 0.56 10.32 7.80 -12.66 -0.10 10.22 16 7 O -0.56 -11.47 15.48 5.26 0.08 -11.39 16 8 C -0.18 -2.84 9.46 -37.80 -0.36 -3.20 16 9 C -0.07 -1.02 6.93 -100.49 -0.70 -1.72 16 10 C -0.10 -1.31 6.99 -27.56 -0.19 -1.50 16 11 C -0.14 -1.35 8.17 -26.19 -0.21 -1.57 16 12 C -0.11 -1.09 7.96 -27.40 -0.22 -1.31 16 13 C 0.07 1.12 5.93 -2.41 -0.01 1.10 16 14 C 0.18 3.24 2.96 -65.67 -0.19 3.05 16 15 H 0.08 1.44 7.99 -51.93 -0.42 1.02 16 16 N -0.73 -16.34 4.37 -51.24 -0.22 -16.56 16 17 C -0.25 -6.61 10.44 -15.06 -0.16 -6.77 16 18 H 0.09 2.60 8.06 -52.49 -0.42 2.18 16 19 C 0.01 0.34 5.50 -17.43 -0.10 0.24 16 20 N -0.93 -28.39 13.97 55.49 0.78 -27.62 16 21 Si 0.88 22.02 27.74 -169.99 -4.71 17.31 16 22 H -0.28 -6.98 7.11 56.52 0.40 -6.58 16 23 H -0.29 -7.44 7.11 56.52 0.40 -7.03 16 24 H -0.28 -6.82 6.52 56.52 0.37 -6.45 16 25 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.06 1.04 6.34 -51.93 -0.33 0.71 16 28 H 0.06 0.64 7.44 -51.93 -0.39 0.25 16 29 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 1.11 7.82 -51.93 -0.41 0.71 16 32 H 0.06 0.93 7.84 -51.93 -0.41 0.53 16 33 H 0.13 1.88 6.87 -52.49 -0.36 1.52 16 34 H 0.08 1.19 7.49 -51.93 -0.39 0.80 16 35 H 0.09 1.17 8.14 -51.93 -0.42 0.75 16 36 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 37 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 39 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.06 0.82 7.71 -51.93 -0.40 0.42 16 41 H 0.08 1.48 7.14 -51.93 -0.37 1.11 16 42 H 0.36 8.36 4.19 -40.82 -0.17 8.18 16 43 H 0.26 7.63 8.31 -40.82 -0.34 7.29 16 LS Contribution 341.65 15.07 5.15 5.15 Total: -1.00 -31.79 341.65 -8.30 -40.09 By element: Atomic # 1 Polarization: 14.86 SS G_CDS: -7.03 Total: 7.83 kcal Atomic # 6 Polarization: -2.06 SS G_CDS: -1.76 Total: -3.83 kcal Atomic # 7 Polarization: -55.14 SS G_CDS: -0.02 Total: -55.16 kcal Atomic # 8 Polarization: -11.47 SS G_CDS: 0.08 Total: -11.39 kcal Atomic # 14 Polarization: 22.02 SS G_CDS: -4.71 Total: 17.31 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -31.79 -8.30 -40.09 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000995655958.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.283 kcal (2) G-P(sol) polarization free energy of solvation -31.788 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.495 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.299 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.088 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds