Wall clock time and date at job start Tue Mar 31 2020 00:02:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 110.63938 * 2 1 4 4 C 1.54333 * 110.71880 * 123.13631 * 2 1 3 5 5 N 1.47018 * 107.26981 * 140.55787 * 4 2 1 6 6 C 1.34774 * 125.65141 * 181.02474 * 5 4 2 7 7 O 1.21615 * 119.99827 * 0.02562 * 6 5 4 8 8 C 1.47104 * 120.00400 * 180.02562 * 6 5 4 9 9 C 1.32994 * 119.99796 * 180.02562 * 8 6 5 10 10 C 1.51401 * 136.31960 * 359.62678 * 9 8 6 11 11 C 1.53376 * 87.51798 * 206.05575 * 10 9 8 12 12 C 1.51401 * 136.31366 * 179.97438 * 9 8 6 13 13 C 1.47435 * 108.70282 * 1.28551 * 5 4 2 14 14 C 1.55123 * 104.72068 * 335.55527 * 13 5 4 15 15 H 1.09000 * 110.90382 * 155.27123 * 14 13 5 16 16 N 1.46500 * 111.19440 * 279.18393 * 14 13 5 17 17 C 1.36930 * 120.00346 * 267.19382 * 16 14 13 18 18 H 1.08001 * 120.00050 * 359.97438 * 17 16 14 19 19 C 1.38815 * 119.99940 * 179.97438 * 17 16 14 20 20 N 1.31625 * 119.99913 * 179.97438 * 19 17 16 21 21 Si 1.86798 * 120.00103 * 0.02562 * 19 17 16 22 22 H 1.48497 * 109.47060 * 89.99659 * 21 19 17 23 23 H 1.48496 * 109.46934 * 209.99903 * 21 19 17 24 24 H 1.48500 * 109.46794 * 329.99877 * 21 19 17 25 25 H 1.09004 * 109.46843 * 298.31488 * 1 2 3 26 26 H 1.09000 * 109.46584 * 58.31509 * 1 2 3 27 27 H 1.08995 * 109.46744 * 178.31704 * 1 2 3 28 28 H 1.08998 * 109.47046 * 181.68684 * 3 2 1 29 29 H 1.09001 * 109.47366 * 301.68385 * 3 2 1 30 30 H 1.08998 * 109.47412 * 61.68772 * 3 2 1 31 31 H 1.08994 * 109.87929 * 21.14149 * 4 2 1 32 32 H 1.09002 * 109.88307 * 259.97662 * 4 2 1 33 33 H 1.08000 * 119.99479 * 0.26978 * 8 6 5 34 34 H 1.08998 * 113.56306 * 320.64388 * 10 9 8 35 35 H 1.09006 * 113.56200 * 91.37232 * 10 9 8 36 36 H 1.08999 * 113.96717 * 220.28815 * 11 10 9 37 37 H 1.09006 * 113.59637 * 88.79705 * 11 10 9 38 38 H 1.09006 * 113.56215 * 268.62950 * 12 9 8 39 39 H 1.09004 * 113.56278 * 39.36209 * 12 9 8 40 40 H 1.09005 * 110.36054 * 94.48445 * 13 5 4 41 41 H 1.09001 * 110.36448 * 216.80242 * 13 5 4 42 42 H 0.97002 * 119.99368 * 87.19015 * 16 14 13 43 43 H 0.96999 * 119.99802 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0693 1.4318 0.0000 4 6 2.0760 -0.7891 1.2088 5 7 3.2445 -1.5494 0.7419 6 6 3.9923 -2.3809 1.4940 7 8 3.7184 -2.5522 2.6665 8 6 5.1398 -3.0814 0.8969 9 6 5.8774 -3.9023 1.6391 10 6 5.8816 -4.3707 3.0788 11 6 7.3865 -4.6221 2.9227 12 6 7.0914 -4.7808 1.4229 13 6 3.4666 -1.2467 -0.6839 14 6 2.0790 -0.7976 -1.2123 15 1 2.1851 -0.1555 -2.0867 16 7 1.2272 -1.9514 -1.5111 17 6 1.2023 -2.4748 -2.7761 18 1 1.8103 -2.0368 -3.5538 19 6 0.3955 -3.5685 -3.0590 20 7 0.3711 -4.0713 -4.2752 21 14 -0.6567 -4.3257 -1.7140 22 1 -1.9861 -3.6642 -1.6942 23 1 -0.8296 -5.7766 -1.9788 24 1 0.0092 -4.1381 -0.4001 25 1 -0.3633 0.4875 0.9048 26 1 -0.3632 0.5398 -0.8745 27 1 -0.3632 -1.0272 -0.0302 28 1 3.1587 1.4097 -0.0303 29 1 1.6923 1.9621 -0.8745 30 1 1.7413 1.9436 0.9047 31 1 1.3130 -1.4730 1.5802 32 1 2.3741 -0.0989 1.9980 33 1 5.3856 -2.9259 -0.1432 34 1 5.6448 -3.5830 3.7940 35 1 5.3027 -5.2796 3.2430 36 1 7.7347 -5.5371 3.4021 37 1 8.0010 -3.7540 3.1615 38 1 6.8441 -5.8021 1.1331 39 1 7.8470 -4.3293 0.7799 40 1 4.1948 -0.4428 -0.7920 41 1 3.8032 -2.1383 -1.2129 42 1 0.6809 -2.3446 -0.8126 43 1 -0.1923 -4.8357 -4.4727 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000995655958.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:02:32 Heat of formation + Delta-G solvation = 2.005157 kcal Electronic energy + Delta-G solvation = -22425.201765 eV Core-core repulsion = 19278.077557 eV Total energy + Delta-G solvation = -3147.124208 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.41142 -39.96375 -38.78340 -35.80376 -34.66690 -33.04417 -31.85329 -29.79411 -28.05808 -27.58304 -26.69622 -25.50858 -23.97545 -22.92721 -20.86473 -20.57269 -19.42501 -18.61530 -18.12867 -17.24640 -16.68863 -16.39937 -16.23801 -16.05285 -15.40731 -15.18304 -14.96279 -14.56875 -14.40621 -13.89344 -13.70973 -13.53282 -13.37398 -13.13757 -12.95074 -12.89874 -12.83467 -12.68075 -12.61662 -12.29500 -11.96525 -11.92230 -11.85214 -11.60203 -11.49693 -11.33628 -11.03215 -10.71273 -10.26557 -9.68366 -9.22369 -8.03844 -5.34800 0.33426 1.31742 1.34219 1.38782 2.02647 2.27801 2.43746 3.23256 3.26505 3.46277 3.54763 3.57868 3.78787 3.80183 3.98369 4.10764 4.24376 4.27448 4.41362 4.56429 4.58786 4.65396 4.70791 4.72006 4.80297 4.86221 4.87045 4.88674 4.97628 5.02205 5.05078 5.09459 5.18519 5.26546 5.33167 5.34798 5.42300 5.51473 5.66373 5.78525 6.21363 6.54684 7.05993 7.15425 7.82893 8.00144 9.17412 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.014220 B = 0.005937 C = 0.004804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1968.568919 B = 4715.358685 C = 5826.554601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.080 4.080 3 C -0.124 4.124 4 C 0.119 3.881 5 N -0.606 5.606 6 C 0.554 3.446 7 O -0.591 6.591 8 C -0.213 4.213 9 C -0.074 4.074 10 C -0.116 4.116 11 C -0.125 4.125 12 C -0.099 4.099 13 C 0.078 3.922 14 C 0.171 3.829 15 H 0.090 0.910 16 N -0.738 5.738 17 C -0.218 4.218 18 H 0.073 0.927 19 C -0.051 4.051 20 N -0.977 5.977 21 Si 0.934 3.066 22 H -0.275 1.275 23 H -0.298 1.298 24 H -0.273 1.273 25 H 0.073 0.927 26 H 0.065 0.935 27 H 0.032 0.968 28 H 0.062 0.938 29 H 0.071 0.929 30 H 0.072 0.928 31 H 0.041 0.959 32 H 0.075 0.925 33 H 0.143 0.857 34 H 0.063 0.937 35 H 0.096 0.904 36 H 0.099 0.901 37 H 0.090 0.910 38 H 0.113 0.887 39 H 0.094 0.906 40 H 0.095 0.905 41 H 0.065 0.935 42 H 0.361 0.639 43 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.822 6.809 12.572 18.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.081 4.081 3 C -0.182 4.182 4 C -0.004 4.004 5 N -0.337 5.337 6 C 0.347 3.653 7 O -0.475 6.475 8 C -0.233 4.233 9 C -0.076 4.076 10 C -0.153 4.153 11 C -0.162 4.162 12 C -0.136 4.136 13 C -0.047 4.047 14 C 0.061 3.939 15 H 0.108 0.892 16 N -0.379 5.379 17 C -0.349 4.349 18 H 0.091 0.909 19 C -0.243 4.243 20 N -0.628 5.628 21 Si 0.764 3.236 22 H -0.201 1.201 23 H -0.225 1.225 24 H -0.199 1.199 25 H 0.092 0.908 26 H 0.084 0.916 27 H 0.051 0.949 28 H 0.081 0.919 29 H 0.090 0.910 30 H 0.091 0.909 31 H 0.059 0.941 32 H 0.094 0.906 33 H 0.161 0.839 34 H 0.082 0.918 35 H 0.115 0.885 36 H 0.118 0.882 37 H 0.109 0.891 38 H 0.131 0.869 39 H 0.112 0.888 40 H 0.113 0.887 41 H 0.084 0.916 42 H 0.195 0.805 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 11.742 6.660 12.979 18.727 hybrid contribution -1.149 -0.989 0.338 1.553 sum 10.593 5.671 13.316 17.936 Atomic orbital electron populations 1.21649 0.93170 1.01055 1.02614 1.21937 0.96548 0.96597 0.93047 1.21717 1.01178 0.92029 1.03244 1.22059 0.87067 0.93994 0.97275 1.48345 1.29433 1.43744 1.12180 1.18572 0.83191 0.78463 0.85099 1.90689 1.72902 1.66114 1.17775 1.21647 0.96860 1.04146 1.00683 1.23988 0.94117 0.91983 0.97534 1.22319 0.98291 1.01276 0.93378 1.22701 0.94325 1.03643 0.95500 1.22423 0.93394 0.99389 0.98354 1.23344 1.00480 1.01275 0.79633 1.21666 0.88257 0.87881 0.96094 0.89217 1.42760 1.51638 1.35369 1.08183 1.19076 1.19735 1.08854 0.87241 0.90931 1.25215 1.01914 0.99602 0.97607 1.69829 1.44943 1.27509 1.20551 0.85731 0.80093 0.77726 0.80066 1.20098 1.22537 1.19906 0.90800 0.91556 0.94884 0.91868 0.90992 0.90918 0.94092 0.90641 0.83920 0.91824 0.88547 0.88222 0.89137 0.86880 0.88765 0.88733 0.91613 0.80538 0.93469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.57 8.15 71.98 0.59 -2.98 16 2 C -0.08 -2.20 0.80 -50.99 -0.04 -2.24 16 3 C -0.12 -2.49 8.44 71.98 0.61 -1.88 16 4 C 0.12 3.71 6.04 86.73 0.52 4.23 16 5 N -0.61 -20.49 3.32 -815.59 -2.71 -23.20 16 6 C 0.55 20.25 7.80 86.57 0.67 20.92 16 7 O -0.59 -24.67 15.48 -4.08 -0.06 -24.74 16 8 C -0.21 -6.54 9.46 23.43 0.22 -6.31 16 9 C -0.07 -1.96 6.93 -17.18 -0.12 -2.08 16 10 C -0.12 -2.81 6.99 30.06 0.21 -2.60 16 11 C -0.12 -2.01 8.17 30.94 0.25 -1.76 16 12 C -0.10 -1.75 7.96 30.16 0.24 -1.51 16 13 C 0.08 2.43 5.93 86.93 0.52 2.94 16 14 C 0.17 5.79 2.96 46.46 0.14 5.93 16 15 H 0.09 2.95 7.99 -2.39 -0.02 2.93 16 16 N -0.74 -32.67 4.37 -316.03 -1.38 -34.05 16 17 C -0.22 -11.71 10.44 84.04 0.88 -10.83 16 18 H 0.07 4.15 8.06 -2.91 -0.02 4.13 16 19 C -0.05 -2.96 5.50 84.86 0.47 -2.50 16 20 N -0.98 -61.19 13.97 21.65 0.30 -60.88 16 21 Si 0.93 46.43 27.74 68.60 1.90 48.33 16 22 H -0.27 -13.20 7.11 99.48 0.71 -12.49 16 23 H -0.30 -15.13 7.11 99.48 0.71 -14.42 16 24 H -0.27 -13.18 6.52 99.48 0.65 -12.53 16 25 H 0.07 1.68 8.14 -2.38 -0.02 1.66 16 26 H 0.07 1.82 8.14 -2.39 -0.02 1.81 16 27 H 0.03 1.10 6.34 -2.39 -0.02 1.09 16 28 H 0.06 1.20 7.44 -2.39 -0.02 1.18 16 29 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 30 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.04 1.45 7.82 -2.39 -0.02 1.43 16 32 H 0.08 2.15 7.84 -2.39 -0.02 2.13 16 33 H 0.14 3.95 6.87 -2.91 -0.02 3.93 16 34 H 0.06 1.81 7.49 -2.39 -0.02 1.79 16 35 H 0.10 2.30 8.14 -2.38 -0.02 2.28 16 36 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 37 H 0.09 1.35 8.14 -2.38 -0.02 1.33 16 38 H 0.11 1.77 8.14 -2.38 -0.02 1.75 16 39 H 0.09 1.39 8.14 -2.38 -0.02 1.37 16 40 H 0.09 2.33 7.71 -2.38 -0.02 2.32 16 41 H 0.07 2.30 7.14 -2.39 -0.02 2.29 16 42 H 0.36 16.49 4.19 -92.71 -0.39 16.11 16 43 H 0.26 15.47 8.31 -92.71 -0.77 14.70 16 Total: -1.00 -70.49 341.65 3.75 -66.75 By element: Atomic # 1 Polarization: 27.92 SS G_CDS: 0.54 Total: 28.47 kcal Atomic # 6 Polarization: -5.82 SS G_CDS: 5.15 Total: -0.67 kcal Atomic # 7 Polarization: -114.35 SS G_CDS: -3.79 Total: -118.14 kcal Atomic # 8 Polarization: -24.67 SS G_CDS: -0.06 Total: -24.74 kcal Atomic # 14 Polarization: 46.43 SS G_CDS: 1.90 Total: 48.33 kcal Total: -70.49 3.75 -66.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000995655958.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.750 kcal (2) G-P(sol) polarization free energy of solvation -70.490 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.745 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds