Wall clock time and date at job start Tue Mar 31 2020 00:03:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52995 * 110.91452 * 2 1 4 4 C 1.55130 * 111.19203 * 236.08589 * 2 1 3 5 5 N 1.47424 * 104.72062 * 279.19202 * 4 2 1 6 6 C 1.34778 * 125.64300 * 155.81759 * 5 4 2 7 7 O 1.21277 * 120.00426 * 359.72032 * 6 5 4 8 8 C 1.50706 * 119.99906 * 179.71425 * 6 5 4 9 9 H 1.08998 * 115.54512 * 34.41796 * 8 6 5 10 10 C 1.52995 * 117.50181 * 248.75034 * 8 6 5 11 11 C 1.52993 * 117.50081 * 180.08799 * 8 6 5 12 12 C 1.52992 * 138.58906 * 336.60314 * 11 8 6 13 13 C 1.52996 * 138.58947 * 238.38409 * 11 8 6 14 14 C 1.47019 * 108.70461 * 335.55423 * 5 4 2 15 15 C 1.54315 * 107.27138 * 1.28696 * 14 5 4 16 16 H 1.08996 * 110.72531 * 263.65153 * 15 14 5 17 17 N 1.46505 * 110.72034 * 140.55643 * 15 14 5 18 18 C 1.36932 * 119.99933 * 86.45511 * 17 15 14 19 19 H 1.08001 * 120.00326 * 359.97438 * 18 17 15 20 20 C 1.38818 * 119.99930 * 180.02562 * 18 17 15 21 21 N 1.31620 * 119.99894 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00030 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47071 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.47219 * 119.99652 * 22 20 18 25 25 H 1.48498 * 109.47026 * 240.00056 * 22 20 18 26 26 H 1.08994 * 109.47103 * 296.10130 * 1 2 3 27 27 H 1.09004 * 109.46592 * 56.09854 * 1 2 3 28 28 H 1.09000 * 109.47303 * 176.09654 * 1 2 3 29 29 H 1.09004 * 109.46971 * 183.90255 * 3 2 1 30 30 H 1.09004 * 109.46947 * 303.89857 * 3 2 1 31 31 H 1.08995 * 109.47459 * 63.90146 * 3 2 1 32 32 H 1.09007 * 110.49512 * 160.35016 * 4 2 1 33 33 H 1.09004 * 110.34456 * 37.95871 * 4 2 1 34 34 H 1.09007 * 117.50112 * 359.97438 * 10 8 6 35 35 H 1.08997 * 117.50394 * 145.01912 * 10 8 6 36 36 H 1.09003 * 117.49662 * 336.59459 * 12 11 8 37 37 H 1.08994 * 117.49984 * 121.61402 * 12 11 8 38 38 H 1.09000 * 117.49782 * 238.38444 * 13 11 8 39 39 H 1.08998 * 117.49720 * 23.38213 * 13 11 8 40 40 H 1.09004 * 109.88155 * 120.70661 * 14 5 4 41 41 H 1.09004 * 109.88267 * 241.71263 * 14 5 4 42 42 H 0.97002 * 119.99800 * 266.44959 * 17 15 14 43 43 H 0.97001 * 119.99864 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0762 1.4291 0.0000 4 6 2.0909 -0.8070 -1.2003 5 7 2.0139 -2.2159 -0.7732 6 6 1.9471 -3.2829 -1.5939 7 8 1.9421 -3.1239 -2.7962 8 6 1.8788 -4.6737 -1.0176 9 1 1.3277 -4.7683 -0.0819 10 6 3.0944 -5.5813 -1.2162 11 6 1.8067 -5.8433 -2.0012 12 6 1.3761 -6.1024 -3.4462 13 6 0.8780 -7.0155 -2.3241 14 6 2.0285 -2.2646 0.6961 15 6 2.0861 -0.8079 1.2023 16 1 3.1129 -0.5170 1.4240 17 7 1.2343 -0.6348 2.3815 18 6 1.7296 -0.9041 3.6294 19 1 2.7481 -1.2444 3.7443 20 6 0.9222 -0.7406 4.7468 21 7 -0.3192 -0.3263 4.6067 22 14 1.5977 -1.1085 6.4491 23 1 3.0090 -1.5562 6.3354 24 1 1.5327 0.1183 7.2832 25 1 0.7882 -2.1807 7.0817 26 1 -0.3633 0.4521 0.9228 27 1 -0.3633 0.5732 -0.8530 28 1 -0.3634 -1.0253 -0.0700 29 1 3.1637 1.4025 -0.0699 30 1 1.6705 1.9731 -0.8530 31 1 1.7837 1.9300 0.9228 32 1 3.1254 -0.5267 -1.3987 33 1 1.4765 -0.6450 -2.0860 34 1 3.9435 -5.1726 -1.7642 35 1 3.3428 -6.2732 -0.4115 36 1 0.6583 -5.4117 -3.8890 37 1 2.1232 -6.5061 -4.1294 38 1 1.2977 -8.0200 -2.2690 39 1 -0.1672 -6.9258 -2.0283 40 1 1.1218 -2.7479 1.0601 41 1 2.9048 -2.8140 1.0402 42 1 0.3194 -0.3294 2.2783 43 1 -0.8835 -0.2124 5.3875 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000996345440.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:03:03 Heat of formation + Delta-G solvation = 38.128089 kcal Electronic energy + Delta-G solvation = -22287.403832 eV Core-core repulsion = 19141.846032 eV Total energy + Delta-G solvation = -3145.557800 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.15506 -38.61767 -36.98553 -34.10814 -33.22058 -32.44942 -30.83185 -27.55539 -27.01794 -26.73931 -24.01213 -23.30631 -22.44088 -21.34021 -19.85672 -18.82868 -18.10680 -17.26671 -16.85851 -15.80708 -15.29530 -15.05841 -14.94767 -14.41576 -14.02705 -14.00802 -13.59937 -13.20909 -12.76169 -12.59550 -12.38095 -12.13004 -11.97331 -11.69756 -11.54624 -11.52185 -11.23944 -11.05519 -10.93890 -10.59186 -10.50461 -10.25602 -10.20769 -10.12431 -10.01010 -9.88670 -9.68839 -9.50607 -9.01503 -8.27281 -7.10468 -5.87551 -3.17701 2.67770 3.12778 3.37123 3.43530 3.45387 3.70550 3.79593 4.26183 4.49892 4.65036 4.77631 4.88019 5.08081 5.16764 5.19798 5.39766 5.49800 5.53725 5.55565 5.59415 5.60319 5.66043 5.73481 5.79602 5.84935 5.86531 5.91177 6.00475 6.03183 6.11576 6.12716 6.24410 6.33499 6.37184 6.44939 6.62055 6.65359 6.74700 6.89446 7.62044 7.84800 8.30734 8.43691 9.43092 9.97517 10.32629 11.34682 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.017196 B = 0.004851 C = 0.004096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.928716 B = 5771.044908 C = 6834.018029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.086 4.086 3 C -0.129 4.129 4 C 0.118 3.882 5 N -0.608 5.608 6 C 0.554 3.446 7 O -0.550 6.550 8 C -0.134 4.134 9 H 0.125 0.875 10 C -0.100 4.100 11 C -0.202 4.202 12 C -0.114 4.114 13 C -0.131 4.131 14 C 0.075 3.925 15 C 0.180 3.820 16 H 0.066 0.934 17 N -0.712 5.712 18 C -0.247 4.247 19 H 0.072 0.928 20 C -0.008 4.008 21 N -0.930 5.930 22 Si 0.906 3.094 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.291 1.291 26 H 0.072 0.928 27 H 0.048 0.952 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.050 0.950 31 H 0.068 0.932 32 H 0.064 0.936 33 H 0.072 0.928 34 H 0.099 0.901 35 H 0.105 0.895 36 H 0.098 0.902 37 H 0.094 0.906 38 H 0.097 0.903 39 H 0.096 0.904 40 H 0.072 0.928 41 H 0.059 0.941 42 H 0.390 0.610 43 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.319 -6.589 -12.029 14.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.087 4.087 3 C -0.187 4.187 4 C -0.004 4.004 5 N -0.340 5.340 6 C 0.343 3.657 7 O -0.429 6.429 8 C -0.155 4.155 9 H 0.142 0.858 10 C -0.137 4.137 11 C -0.202 4.202 12 C -0.150 4.150 13 C -0.168 4.168 14 C -0.051 4.051 15 C 0.068 3.932 16 H 0.083 0.917 17 N -0.354 5.354 18 C -0.378 4.378 19 H 0.090 0.910 20 C -0.205 4.205 21 N -0.577 5.577 22 Si 0.737 3.263 23 H -0.205 1.205 24 H -0.218 1.218 25 H -0.218 1.218 26 H 0.091 0.909 27 H 0.067 0.933 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.069 0.931 31 H 0.087 0.913 32 H 0.082 0.918 33 H 0.090 0.910 34 H 0.117 0.883 35 H 0.124 0.876 36 H 0.117 0.883 37 H 0.113 0.887 38 H 0.115 0.885 39 H 0.114 0.886 40 H 0.091 0.909 41 H 0.077 0.923 42 H 0.227 0.773 43 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 4.388 -6.583 -12.514 14.805 hybrid contribution -0.019 -0.154 1.208 1.218 sum 4.369 -6.737 -11.306 13.867 Atomic orbital electron populations 1.21640 0.93573 1.01789 1.01909 1.22013 0.96483 0.95351 0.94887 1.21646 1.00209 0.94644 1.02160 1.22336 1.00383 0.80163 0.97560 1.48428 1.71708 1.05804 1.08095 1.19293 0.76104 0.84625 0.85691 1.90646 1.51393 1.86215 1.14620 1.21948 1.04559 0.88540 1.00426 0.85750 1.22642 0.90384 0.99800 1.00869 1.21160 1.01165 0.99110 0.98786 1.22562 1.02242 1.00928 0.89313 1.22749 0.98329 0.93718 1.01984 1.23316 1.01572 1.02751 0.77477 1.21213 0.95398 0.89717 0.86892 0.91655 1.42552 1.13207 1.79274 1.00403 1.19304 0.96822 1.38004 0.83669 0.90973 1.24745 0.95965 1.01805 0.97937 1.69664 1.06611 1.52372 1.29097 0.86135 0.78002 0.77502 0.84624 1.20477 1.21807 1.21831 0.90877 0.93323 0.92792 0.92823 0.93107 0.91322 0.91765 0.90977 0.88268 0.87636 0.88319 0.88737 0.88460 0.88572 0.90943 0.92263 0.77314 0.93402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.16 7.94 37.16 0.30 -1.86 16 2 C -0.09 -1.36 0.87 -152.24 -0.13 -1.49 16 3 C -0.13 -1.83 8.68 37.15 0.32 -1.51 16 4 C 0.12 1.82 5.85 -2.41 -0.01 1.81 16 5 N -0.61 -9.95 3.31 -170.38 -0.56 -10.51 16 6 C 0.55 9.34 7.63 -10.98 -0.08 9.26 16 7 O -0.55 -10.60 16.50 5.56 0.09 -10.51 16 8 C -0.13 -1.90 5.53 -91.77 -0.51 -2.41 16 9 H 0.12 1.72 7.68 -51.93 -0.40 1.32 16 10 C -0.10 -1.19 10.24 -26.70 -0.27 -1.46 16 11 C -0.20 -2.58 5.06 -154.48 -0.78 -3.36 16 12 C -0.11 -1.34 10.16 -26.73 -0.27 -1.61 16 13 C -0.13 -1.36 10.53 -26.73 -0.28 -1.64 16 14 C 0.07 1.28 5.74 -3.07 -0.02 1.26 16 15 C 0.18 3.32 2.85 -66.10 -0.19 3.13 16 16 H 0.07 1.22 8.02 -51.93 -0.42 0.80 16 17 N -0.71 -16.35 5.08 -51.65 -0.26 -16.62 16 18 C -0.25 -6.38 9.98 -15.06 -0.15 -6.53 16 19 H 0.07 1.81 7.83 -52.49 -0.41 1.40 16 20 C -0.01 -0.22 5.50 -17.43 -0.10 -0.31 16 21 N -0.93 -26.69 13.06 55.49 0.72 -25.96 16 22 Si 0.91 21.39 29.55 -169.99 -5.02 16.36 16 23 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 24 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 25 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 26 H 0.07 1.34 6.34 -51.93 -0.33 1.01 16 27 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.05 0.93 7.91 -51.93 -0.41 0.52 16 29 H 0.05 0.70 8.07 -51.93 -0.42 0.28 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 31 H 0.07 1.09 8.14 -51.93 -0.42 0.66 16 32 H 0.06 0.92 7.99 -51.93 -0.41 0.51 16 33 H 0.07 1.13 7.95 -51.93 -0.41 0.71 16 34 H 0.10 1.19 8.14 -51.93 -0.42 0.77 16 35 H 0.11 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.10 1.26 8.14 -51.93 -0.42 0.84 16 37 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 38 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.10 0.96 8.14 -51.93 -0.42 0.53 16 40 H 0.07 1.35 7.86 -51.93 -0.41 0.94 16 41 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 42 H 0.39 9.50 5.26 -40.82 -0.21 9.29 16 43 H 0.26 7.15 8.31 -40.82 -0.34 6.81 16 LS Contribution 350.02 15.07 5.27 5.27 Total: -1.00 -29.62 350.02 -9.14 -38.76 By element: Atomic # 1 Polarization: 17.13 SS G_CDS: -7.20 Total: 9.93 kcal Atomic # 6 Polarization: -4.54 SS G_CDS: -2.18 Total: -6.72 kcal Atomic # 7 Polarization: -52.99 SS G_CDS: -0.10 Total: -53.09 kcal Atomic # 8 Polarization: -10.60 SS G_CDS: 0.09 Total: -10.51 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.36 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -29.62 -9.14 -38.76 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996345440.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.887 kcal (2) G-P(sol) polarization free energy of solvation -29.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.759 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds