Wall clock time and date at job start Tue Mar 31 2020 00:03:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52995 * 110.91452 * 2 1 4 4 C 1.55130 * 111.19203 * 236.08589 * 2 1 3 5 5 N 1.47424 * 104.72062 * 279.19202 * 4 2 1 6 6 C 1.34778 * 125.64300 * 155.81759 * 5 4 2 7 7 O 1.21277 * 120.00426 * 359.72032 * 6 5 4 8 8 C 1.50706 * 119.99906 * 179.71425 * 6 5 4 9 9 H 1.08998 * 115.54512 * 34.41796 * 8 6 5 10 10 C 1.52995 * 117.50181 * 248.75034 * 8 6 5 11 11 C 1.52993 * 117.50081 * 180.08799 * 8 6 5 12 12 C 1.52992 * 138.58906 * 336.60314 * 11 8 6 13 13 C 1.52996 * 138.58947 * 238.38409 * 11 8 6 14 14 C 1.47019 * 108.70461 * 335.55423 * 5 4 2 15 15 C 1.54315 * 107.27138 * 1.28696 * 14 5 4 16 16 H 1.08996 * 110.72531 * 263.65153 * 15 14 5 17 17 N 1.46505 * 110.72034 * 140.55643 * 15 14 5 18 18 C 1.36932 * 119.99933 * 86.45511 * 17 15 14 19 19 H 1.08001 * 120.00326 * 359.97438 * 18 17 15 20 20 C 1.38818 * 119.99930 * 180.02562 * 18 17 15 21 21 N 1.31620 * 119.99894 * 359.97438 * 20 18 17 22 22 Si 1.86799 * 120.00030 * 179.97438 * 20 18 17 23 23 H 1.48501 * 109.47071 * 359.97438 * 22 20 18 24 24 H 1.48494 * 109.47219 * 119.99652 * 22 20 18 25 25 H 1.48498 * 109.47026 * 240.00056 * 22 20 18 26 26 H 1.08994 * 109.47103 * 296.10130 * 1 2 3 27 27 H 1.09004 * 109.46592 * 56.09854 * 1 2 3 28 28 H 1.09000 * 109.47303 * 176.09654 * 1 2 3 29 29 H 1.09004 * 109.46971 * 183.90255 * 3 2 1 30 30 H 1.09004 * 109.46947 * 303.89857 * 3 2 1 31 31 H 1.08995 * 109.47459 * 63.90146 * 3 2 1 32 32 H 1.09007 * 110.49512 * 160.35016 * 4 2 1 33 33 H 1.09004 * 110.34456 * 37.95871 * 4 2 1 34 34 H 1.09007 * 117.50112 * 359.97438 * 10 8 6 35 35 H 1.08997 * 117.50394 * 145.01912 * 10 8 6 36 36 H 1.09003 * 117.49662 * 336.59459 * 12 11 8 37 37 H 1.08994 * 117.49984 * 121.61402 * 12 11 8 38 38 H 1.09000 * 117.49782 * 238.38444 * 13 11 8 39 39 H 1.08998 * 117.49720 * 23.38213 * 13 11 8 40 40 H 1.09004 * 109.88155 * 120.70661 * 14 5 4 41 41 H 1.09004 * 109.88267 * 241.71263 * 14 5 4 42 42 H 0.97002 * 119.99800 * 266.44959 * 17 15 14 43 43 H 0.97001 * 119.99864 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0762 1.4291 0.0000 4 6 2.0909 -0.8070 -1.2003 5 7 2.0139 -2.2159 -0.7732 6 6 1.9471 -3.2829 -1.5939 7 8 1.9421 -3.1239 -2.7962 8 6 1.8788 -4.6737 -1.0176 9 1 1.3277 -4.7683 -0.0819 10 6 3.0944 -5.5813 -1.2162 11 6 1.8067 -5.8433 -2.0012 12 6 1.3761 -6.1024 -3.4462 13 6 0.8780 -7.0155 -2.3241 14 6 2.0285 -2.2646 0.6961 15 6 2.0861 -0.8079 1.2023 16 1 3.1129 -0.5170 1.4240 17 7 1.2343 -0.6348 2.3815 18 6 1.7296 -0.9041 3.6294 19 1 2.7481 -1.2444 3.7443 20 6 0.9222 -0.7406 4.7468 21 7 -0.3192 -0.3263 4.6067 22 14 1.5977 -1.1085 6.4491 23 1 3.0090 -1.5562 6.3354 24 1 1.5327 0.1183 7.2832 25 1 0.7882 -2.1807 7.0817 26 1 -0.3633 0.4521 0.9228 27 1 -0.3633 0.5732 -0.8530 28 1 -0.3634 -1.0253 -0.0700 29 1 3.1637 1.4025 -0.0699 30 1 1.6705 1.9731 -0.8530 31 1 1.7837 1.9300 0.9228 32 1 3.1254 -0.5267 -1.3987 33 1 1.4765 -0.6450 -2.0860 34 1 3.9435 -5.1726 -1.7642 35 1 3.3428 -6.2732 -0.4115 36 1 0.6583 -5.4117 -3.8890 37 1 2.1232 -6.5061 -4.1294 38 1 1.2977 -8.0200 -2.2690 39 1 -0.1672 -6.9258 -2.0283 40 1 1.1218 -2.7479 1.0601 41 1 2.9048 -2.8140 1.0402 42 1 0.3194 -0.3294 2.2783 43 1 -0.8835 -0.2124 5.3875 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996345440.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:03:02 Heat of formation + Delta-G solvation = 21.953885 kcal Electronic energy + Delta-G solvation = -22288.105198 eV Core-core repulsion = 19141.846032 eV Total energy + Delta-G solvation = -3146.259166 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.46413 -39.84654 -38.16038 -35.84502 -34.62626 -33.46403 -32.64590 -29.16033 -28.35381 -27.95859 -25.82744 -24.52026 -23.29428 -22.79539 -20.92142 -20.22440 -19.32468 -19.12828 -18.15952 -17.17468 -16.70455 -16.32270 -15.91491 -15.90142 -15.61561 -15.33184 -14.95311 -14.68666 -14.30361 -13.86949 -13.73610 -13.50554 -13.23426 -12.99022 -12.86528 -12.82190 -12.67911 -12.53925 -12.36647 -12.10741 -12.02761 -11.88061 -11.51654 -11.34629 -11.19053 -11.12122 -10.95342 -10.93347 -10.73552 -9.63626 -9.02798 -7.92484 -5.21340 1.42717 1.50464 1.51801 1.60675 1.90203 2.58185 2.71181 2.80189 3.29866 3.38005 3.40874 3.72547 3.79837 3.82928 3.84677 4.07455 4.16342 4.29917 4.40832 4.43833 4.45256 4.56372 4.65685 4.73093 4.74321 4.77284 4.79308 4.83406 4.88709 4.96934 5.00164 5.01254 5.06756 5.16079 5.21718 5.26020 5.30864 5.41501 5.50936 5.57416 6.29149 6.50585 7.11633 7.37586 8.10048 8.34504 9.30893 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.017196 B = 0.004851 C = 0.004096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1627.928716 B = 5771.044908 C = 6834.018029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.078 4.078 3 C -0.124 4.124 4 C 0.120 3.880 5 N -0.608 5.608 6 C 0.551 3.449 7 O -0.578 6.578 8 C -0.156 4.156 9 H 0.124 0.876 10 C -0.081 4.081 11 C -0.223 4.223 12 C -0.123 4.123 13 C -0.110 4.110 14 C 0.090 3.910 15 C 0.173 3.827 16 H 0.069 0.931 17 N -0.722 5.722 18 C -0.238 4.238 19 H 0.080 0.920 20 C -0.069 4.069 21 N -0.968 5.968 22 Si 0.967 3.033 23 H -0.264 1.264 24 H -0.297 1.297 25 H -0.297 1.297 26 H 0.050 0.950 27 H 0.070 0.930 28 H 0.037 0.963 29 H 0.068 0.932 30 H 0.072 0.928 31 H 0.048 0.952 32 H 0.081 0.919 33 H 0.072 0.928 34 H 0.097 0.903 35 H 0.129 0.871 36 H 0.081 0.919 37 H 0.108 0.892 38 H 0.122 0.878 39 H 0.098 0.902 40 H 0.054 0.946 41 H 0.070 0.930 42 H 0.380 0.620 43 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.887 -7.651 -12.710 15.961 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.079 4.079 3 C -0.182 4.182 4 C -0.002 4.002 5 N -0.340 5.340 6 C 0.341 3.659 7 O -0.459 6.459 8 C -0.176 4.176 9 H 0.142 0.858 10 C -0.118 4.118 11 C -0.223 4.223 12 C -0.160 4.160 13 C -0.146 4.146 14 C -0.036 4.036 15 C 0.062 3.938 16 H 0.087 0.913 17 N -0.363 5.363 18 C -0.370 4.370 19 H 0.098 0.902 20 C -0.261 4.261 21 N -0.618 5.618 22 Si 0.797 3.203 23 H -0.188 1.188 24 H -0.225 1.225 25 H -0.225 1.225 26 H 0.069 0.931 27 H 0.089 0.911 28 H 0.056 0.944 29 H 0.087 0.913 30 H 0.091 0.909 31 H 0.067 0.933 32 H 0.099 0.901 33 H 0.090 0.910 34 H 0.116 0.884 35 H 0.147 0.853 36 H 0.099 0.901 37 H 0.126 0.874 38 H 0.140 0.860 39 H 0.117 0.883 40 H 0.072 0.928 41 H 0.088 0.912 42 H 0.216 0.784 43 H 0.059 0.941 Dipole moment (debyes) X Y Z Total from point charges 6.000 -7.654 -13.222 16.414 hybrid contribution -0.498 0.180 1.306 1.409 sum 5.502 -7.474 -11.916 15.104 Atomic orbital electron populations 1.21563 0.94165 1.00905 1.01644 1.21964 0.95931 0.96287 0.93737 1.21612 1.01220 0.93244 1.02094 1.22385 1.01293 0.79519 0.97011 1.48453 1.71555 1.06362 1.07607 1.19763 0.75222 0.85559 0.85358 1.90625 1.52797 1.86733 1.15722 1.21928 1.07070 0.87599 1.01040 0.85843 1.22732 0.89456 0.98672 1.00989 1.21434 1.02139 0.99417 0.99345 1.22616 1.02506 1.01389 0.89442 1.22878 0.98123 0.94028 0.99597 1.22960 1.01129 1.01506 0.77992 1.21399 0.94912 0.90986 0.86464 0.91300 1.42673 1.13316 1.79317 1.01035 1.19680 0.96869 1.35735 0.84733 0.90205 1.25459 0.96371 1.03040 1.01270 1.69811 1.07899 1.54698 1.29437 0.85171 0.77983 0.76624 0.80561 1.18843 1.22472 1.22481 0.93146 0.91069 0.94352 0.91320 0.90887 0.93325 0.90108 0.90984 0.88436 0.85253 0.90053 0.87354 0.85957 0.88328 0.92791 0.91209 0.78402 0.94124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.09 7.94 71.98 0.57 -3.52 16 2 C -0.08 -2.38 0.87 -50.71 -0.04 -2.42 16 3 C -0.12 -3.30 8.68 71.98 0.62 -2.68 16 4 C 0.12 3.51 5.85 86.93 0.51 4.02 16 5 N -0.61 -19.34 3.31 -811.35 -2.69 -22.03 16 6 C 0.55 18.21 7.63 87.66 0.67 18.88 16 7 O -0.58 -22.03 16.50 -3.02 -0.05 -22.08 16 8 C -0.16 -4.27 5.53 -11.54 -0.06 -4.34 16 9 H 0.12 3.35 7.68 -2.39 -0.02 3.33 16 10 C -0.08 -1.77 10.24 30.62 0.31 -1.45 16 11 C -0.22 -5.34 5.06 -52.16 -0.26 -5.60 16 12 C -0.12 -2.73 10.16 30.59 0.31 -2.42 16 13 C -0.11 -2.02 10.53 30.59 0.32 -1.70 16 14 C 0.09 3.02 5.74 86.73 0.50 3.52 16 15 C 0.17 6.26 2.85 46.18 0.13 6.39 16 16 H 0.07 2.47 8.02 -2.39 -0.02 2.45 16 17 N -0.72 -33.36 5.08 -317.33 -1.61 -34.97 16 18 C -0.24 -12.25 9.98 84.04 0.84 -11.41 16 19 H 0.08 3.91 7.83 -2.91 -0.02 3.88 16 20 C -0.07 -3.74 5.50 84.86 0.47 -3.28 16 21 N -0.97 -56.76 13.06 21.65 0.28 -56.48 16 22 Si 0.97 44.12 29.55 68.60 2.03 46.14 16 23 H -0.26 -11.23 7.11 99.48 0.71 -10.52 16 24 H -0.30 -13.75 7.11 99.48 0.71 -13.04 16 25 H -0.30 -13.74 7.11 99.48 0.71 -13.03 16 26 H 0.05 1.88 6.34 -2.39 -0.02 1.87 16 27 H 0.07 1.97 8.14 -2.38 -0.02 1.95 16 28 H 0.04 1.34 7.91 -2.39 -0.02 1.32 16 29 H 0.07 1.62 8.07 -2.38 -0.02 1.60 16 30 H 0.07 1.62 8.14 -2.38 -0.02 1.60 16 31 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.08 2.12 7.99 -2.38 -0.02 2.10 16 33 H 0.07 2.14 7.95 -2.39 -0.02 2.12 16 34 H 0.10 2.14 8.14 -2.38 -0.02 2.12 16 35 H 0.13 2.16 8.14 -2.39 -0.02 2.14 16 36 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 37 H 0.11 2.06 8.14 -2.39 -0.02 2.04 16 38 H 0.12 1.65 8.14 -2.39 -0.02 1.63 16 39 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 40 H 0.05 2.03 7.86 -2.38 -0.02 2.01 16 41 H 0.07 2.20 8.14 -2.38 -0.02 2.18 16 42 H 0.38 19.02 5.26 -92.71 -0.49 18.53 16 43 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16 Total: -1.00 -63.65 350.02 3.34 -60.31 By element: Atomic # 1 Polarization: 34.62 SS G_CDS: 0.50 Total: 35.12 kcal Atomic # 6 Polarization: -10.90 SS G_CDS: 4.88 Total: -6.02 kcal Atomic # 7 Polarization: -109.47 SS G_CDS: -4.01 Total: -113.48 kcal Atomic # 8 Polarization: -22.03 SS G_CDS: -0.05 Total: -22.08 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.14 kcal Total: -63.65 3.34 -60.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996345440.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.262 kcal (2) G-P(sol) polarization free energy of solvation -63.653 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.308 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds