Wall clock time and date at job start Tue Mar 31 2020 00:03:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 110.78206 * 2 1 4 4 C 1.54325 * 110.72125 * 123.24470 * 2 1 3 5 5 N 1.47018 * 107.40412 * 96.24436 * 4 2 1 6 6 C 1.34777 * 125.64981 * 178.82520 * 5 4 2 7 7 O 1.21280 * 119.99909 * 0.02562 * 6 5 4 8 8 C 1.50702 * 120.00100 * 179.97438 * 6 5 4 9 9 H 1.08998 * 115.55042 * 34.33281 * 8 6 5 10 10 C 1.53001 * 117.50029 * 248.61975 * 8 6 5 11 11 C 1.52988 * 60.00045 * 252.51361 * 10 8 6 12 12 C 1.52989 * 138.58742 * 130.89319 * 11 10 8 13 13 C 1.52994 * 138.58779 * 229.10543 * 11 10 8 14 14 C 1.47426 * 108.70517 * 358.86539 * 5 4 2 15 15 C 1.54914 * 104.82992 * 24.12623 * 14 5 4 16 16 H 1.09000 * 111.00339 * 81.07133 * 15 14 5 17 17 N 1.46505 * 111.00202 * 204.91694 * 15 14 5 18 18 C 1.36935 * 120.00217 * 273.54861 * 17 15 14 19 19 H 1.08006 * 119.99642 * 359.97438 * 18 17 15 20 20 C 1.38808 * 120.00007 * 180.02562 * 18 17 15 21 21 N 1.31620 * 120.00356 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 119.99913 * 180.02562 * 20 18 17 23 23 H 1.48497 * 109.47272 * 59.99546 * 22 20 18 24 24 H 1.48501 * 109.47288 * 180.02562 * 22 20 18 25 25 H 1.48500 * 109.46929 * 299.99871 * 22 20 18 26 26 H 1.08999 * 109.47052 * 298.21250 * 1 2 3 27 27 H 1.08993 * 109.46847 * 58.21225 * 1 2 3 28 28 H 1.09005 * 109.46970 * 178.21340 * 1 2 3 29 29 H 1.08999 * 109.47083 * 181.78701 * 3 2 1 30 30 H 1.09002 * 109.47293 * 301.78710 * 3 2 1 31 31 H 1.09000 * 109.47062 * 61.78805 * 3 2 1 32 32 H 1.09002 * 109.88192 * 336.74876 * 4 2 1 33 33 H 1.09000 * 109.88128 * 215.73728 * 4 2 1 34 34 H 1.08998 * 117.49736 * 0.02562 * 10 8 6 35 35 H 1.09004 * 117.49613 * 145.02010 * 10 8 6 36 36 H 1.09004 * 117.50311 * 238.38086 * 12 11 10 37 37 H 1.09005 * 117.49969 * 23.40414 * 12 11 10 38 38 H 1.08997 * 117.50134 * 336.60032 * 13 11 10 39 39 H 1.08997 * 117.49784 * 121.61893 * 13 11 10 40 40 H 1.08999 * 110.36956 * 142.96999 * 14 5 4 41 41 H 1.09003 * 110.36599 * 265.28903 * 14 5 4 42 42 H 0.96998 * 119.99743 * 93.55096 * 17 15 14 43 43 H 0.96989 * 120.00348 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0729 1.4304 0.0000 4 6 2.0761 -0.7913 1.2072 5 7 2.3744 -2.1535 0.7415 6 6 2.8910 -3.1453 1.4938 7 8 3.1495 -2.9484 2.6622 8 6 3.1464 -4.4993 0.8833 9 1 3.4581 -4.4928 -0.1611 10 6 2.2699 -5.6624 1.3522 11 6 3.7340 -5.5832 1.7892 12 6 4.5539 -5.6819 3.0770 13 6 4.9656 -6.4892 1.8443 14 6 2.0157 -2.2547 -0.6849 15 6 2.0792 -0.8000 -1.2138 16 1 3.1058 -0.5103 -1.4381 17 7 1.2196 -0.6303 -2.3880 18 6 1.7020 -0.9172 -3.6370 19 1 2.7164 -1.2682 -3.7566 20 6 0.8877 -0.7558 -4.7495 21 7 -0.3484 -0.3276 -4.6039 22 14 1.5456 -1.1479 -6.4533 23 1 1.9527 -2.5748 -6.5105 24 1 0.4870 -0.8936 -7.4633 25 1 2.7203 -0.2861 -6.7406 26 1 -0.3633 0.4858 0.9056 27 1 -0.3633 0.5413 -0.8735 28 1 -0.3633 -1.0272 -0.0320 29 1 3.1621 1.4056 -0.0320 30 1 1.6957 1.9622 -0.8735 31 1 1.7476 1.9425 0.9056 32 1 1.3264 -0.8256 1.9977 33 1 2.9854 -0.3193 1.5792 34 1 1.5083 -5.4482 2.1020 35 1 2.0047 -6.4213 0.6162 36 1 5.1718 -4.8255 3.3472 37 1 4.1152 -6.2276 3.9125 38 1 4.7977 -7.5658 1.8686 39 1 5.8542 -6.1639 1.3033 40 1 2.7337 -2.8821 -1.2130 41 1 1.0078 -2.6548 -0.7951 42 1 0.3087 -0.3147 -2.2806 43 1 -0.9175 -0.2152 -5.3811 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000996345443.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:03:06 Heat of formation + Delta-G solvation = 21.054852 kcal Electronic energy + Delta-G solvation = -22232.283907 eV Core-core repulsion = 19085.985755 eV Total energy + Delta-G solvation = -3146.298151 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.46804 -39.85932 -38.17130 -35.85452 -34.67352 -33.46942 -32.65069 -29.14517 -28.30530 -27.98814 -25.83897 -24.52462 -23.28485 -22.84903 -20.94470 -20.15538 -19.38265 -19.14602 -18.14619 -17.16506 -16.74470 -16.29458 -15.89182 -15.84137 -15.62607 -15.28179 -14.98350 -14.58591 -14.38392 -14.22362 -13.68111 -13.40644 -13.21341 -12.98942 -12.84289 -12.79227 -12.64521 -12.60142 -12.35583 -12.14601 -12.07115 -11.86149 -11.55100 -11.29393 -11.21213 -11.12051 -10.94892 -10.90615 -10.74015 -9.68604 -9.00854 -7.92126 -5.21048 1.42307 1.51714 1.52751 1.58774 1.87429 2.58202 2.71529 2.80609 3.29868 3.37463 3.40442 3.70830 3.77706 3.81773 3.88213 4.06577 4.13171 4.30037 4.39652 4.42861 4.46012 4.56229 4.65569 4.73018 4.74993 4.78115 4.78358 4.83198 4.85996 4.95978 5.01134 5.02828 5.04534 5.15229 5.18976 5.27027 5.31845 5.41550 5.48981 5.56518 6.29282 6.48938 7.10607 7.38011 8.09829 8.35518 9.30633 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.017050 B = 0.004824 C = 0.004019 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1641.812675 B = 5802.554071 C = 6965.548252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.077 4.077 3 C -0.125 4.125 4 C 0.123 3.877 5 N -0.608 5.608 6 C 0.550 3.450 7 O -0.578 6.578 8 C -0.153 4.153 9 H 0.130 0.870 10 C -0.087 4.087 11 C -0.221 4.221 12 C -0.124 4.124 13 C -0.107 4.107 14 C 0.090 3.910 15 C 0.173 3.827 16 H 0.059 0.941 17 N -0.719 5.719 18 C -0.243 4.243 19 H 0.076 0.924 20 C -0.065 4.065 21 N -0.966 5.966 22 Si 0.966 3.034 23 H -0.278 1.278 24 H -0.299 1.299 25 H -0.280 1.280 26 H 0.075 0.925 27 H 0.050 0.950 28 H 0.045 0.955 29 H 0.058 0.942 30 H 0.050 0.950 31 H 0.075 0.925 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.093 0.907 35 H 0.129 0.871 36 H 0.083 0.917 37 H 0.106 0.894 38 H 0.121 0.879 39 H 0.102 0.898 40 H 0.073 0.927 41 H 0.061 0.939 42 H 0.382 0.618 43 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.653 -7.631 12.359 15.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.078 4.078 3 C -0.182 4.182 4 C 0.000 4.000 5 N -0.341 5.341 6 C 0.340 3.660 7 O -0.459 6.459 8 C -0.174 4.174 9 H 0.148 0.852 10 C -0.124 4.124 11 C -0.222 4.222 12 C -0.161 4.161 13 C -0.143 4.143 14 C -0.036 4.036 15 C 0.062 3.938 16 H 0.077 0.923 17 N -0.360 5.360 18 C -0.375 4.375 19 H 0.094 0.906 20 C -0.258 4.258 21 N -0.616 5.616 22 Si 0.796 3.204 23 H -0.204 1.204 24 H -0.225 1.225 25 H -0.207 1.207 26 H 0.093 0.907 27 H 0.069 0.931 28 H 0.064 0.936 29 H 0.077 0.923 30 H 0.069 0.931 31 H 0.094 0.906 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.112 0.888 35 H 0.147 0.853 36 H 0.101 0.899 37 H 0.124 0.876 38 H 0.139 0.861 39 H 0.120 0.880 40 H 0.092 0.908 41 H 0.079 0.921 42 H 0.218 0.782 43 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 6.914 -7.600 12.851 16.453 hybrid contribution -0.327 0.230 -1.240 1.303 sum 6.586 -7.370 11.610 15.248 Atomic orbital electron populations 1.21646 0.93387 1.01472 1.01956 1.21820 0.96495 0.96104 0.93400 1.21657 1.00710 0.93577 1.02296 1.22035 1.00186 0.81388 0.96363 1.48451 1.61861 1.11682 1.12074 1.19803 0.75995 0.85085 0.85078 1.90628 1.54284 1.83277 1.17678 1.21948 1.08050 0.87441 0.99968 0.85182 1.22709 0.90915 0.96813 1.01951 1.21410 0.95506 1.01788 1.03471 1.22626 1.00645 1.01736 0.91104 1.22884 0.94341 0.97810 0.99311 1.23164 1.00055 1.01346 0.79047 1.21528 0.94383 0.91452 0.86455 0.92341 1.42523 1.13705 1.78776 1.01045 1.19563 0.97120 1.35872 0.84913 0.90563 1.25434 0.96379 1.02816 1.01195 1.69783 1.07863 1.54082 1.29837 0.85323 0.76790 0.78155 0.80136 1.20396 1.22519 1.20670 0.90662 0.93078 0.93581 0.92253 0.93125 0.90622 0.91380 0.91252 0.88841 0.85332 0.89870 0.87580 0.86081 0.87966 0.90828 0.92098 0.78210 0.94018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.93 7.60 71.98 0.55 -3.38 16 2 C -0.08 -2.36 0.86 -50.91 -0.04 -2.40 16 3 C -0.12 -3.43 8.50 71.98 0.61 -2.82 16 4 C 0.12 3.66 6.04 86.73 0.52 4.18 16 5 N -0.61 -19.39 3.33 -811.78 -2.70 -22.09 16 6 C 0.55 18.01 7.63 87.66 0.67 18.68 16 7 O -0.58 -21.94 16.57 -3.03 -0.05 -21.99 16 8 C -0.15 -4.10 5.53 -11.54 -0.06 -4.16 16 9 H 0.13 3.26 7.07 -2.39 -0.02 3.24 16 10 C -0.09 -1.92 10.23 30.59 0.31 -1.61 16 11 C -0.22 -5.17 5.05 -52.19 -0.26 -5.43 16 12 C -0.12 -2.69 10.16 30.59 0.31 -2.38 16 13 C -0.11 -1.86 10.53 30.59 0.32 -1.53 16 14 C 0.09 3.02 6.07 86.86 0.53 3.54 16 15 C 0.17 6.35 2.93 46.47 0.14 6.49 16 16 H 0.06 2.22 8.03 -2.39 -0.02 2.20 16 17 N -0.72 -33.18 5.17 -315.95 -1.63 -34.82 16 18 C -0.24 -12.53 9.98 84.03 0.84 -11.69 16 19 H 0.08 3.77 7.83 -2.91 -0.02 3.75 16 20 C -0.07 -3.54 5.50 84.86 0.47 -3.08 16 21 N -0.97 -56.11 13.06 21.65 0.28 -55.82 16 22 Si 0.97 44.00 29.55 68.60 2.03 46.03 16 23 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 24 H -0.30 -13.88 7.11 99.48 0.71 -13.18 16 25 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 26 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 27 H 0.05 1.80 6.66 -2.39 -0.02 1.79 16 28 H 0.05 1.50 7.46 -2.38 -0.02 1.48 16 29 H 0.06 1.55 8.13 -2.39 -0.02 1.53 16 30 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 31 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.07 1.97 7.84 -2.39 -0.02 1.95 16 33 H 0.07 2.01 7.82 -2.39 -0.02 1.99 16 34 H 0.09 2.17 8.14 -2.39 -0.02 2.15 16 35 H 0.13 2.23 8.14 -2.38 -0.02 2.21 16 36 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 37 H 0.11 2.00 8.14 -2.38 -0.02 1.98 16 38 H 0.12 1.55 8.14 -2.39 -0.02 1.53 16 39 H 0.10 1.65 8.14 -2.39 -0.02 1.64 16 40 H 0.07 2.39 7.00 -2.39 -0.02 2.37 16 41 H 0.06 2.19 7.73 -2.39 -0.02 2.17 16 42 H 0.38 18.83 5.38 -92.71 -0.50 18.33 16 43 H 0.25 14.31 8.31 -92.72 -0.77 13.54 16 Total: -1.00 -62.95 348.17 3.31 -59.63 By element: Atomic # 1 Polarization: 34.16 SS G_CDS: 0.49 Total: 34.65 kcal Atomic # 6 Polarization: -10.49 SS G_CDS: 4.90 Total: -5.59 kcal Atomic # 7 Polarization: -108.68 SS G_CDS: -4.05 Total: -112.73 kcal Atomic # 8 Polarization: -21.94 SS G_CDS: -0.05 Total: -21.99 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.03 kcal Total: -62.95 3.31 -59.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000996345443.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.688 kcal (2) G-P(sol) polarization free energy of solvation -62.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.741 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.313 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.633 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.055 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds