Wall clock time and date at job start Tue Mar 31 2020 00:07:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.47095 * 120.00505 * 2 1 4 4 O 1.21617 * 120.00260 * 180.02562 * 3 2 1 5 5 N 1.34780 * 119.99718 * 359.97438 * 3 2 1 6 6 C 1.46503 * 119.99987 * 180.02562 * 5 3 2 7 7 C 1.53071 * 109.45178 * 84.78906 * 6 5 3 8 8 C 1.53201 * 109.29371 * 181.24494 * 7 6 5 9 9 N 1.46928 * 108.89275 * 305.57634 * 8 7 6 10 10 C 1.36934 * 120.63265 * 233.51651 * 9 8 7 11 11 H 1.07997 * 119.99862 * 151.82898 * 10 9 8 12 12 C 1.38806 * 120.00015 * 331.83027 * 10 9 8 13 13 N 1.31624 * 120.00191 * 343.08772 * 12 10 9 14 14 Si 1.86800 * 120.00146 * 163.08448 * 12 10 9 15 15 H 1.48503 * 109.47142 * 60.00161 * 14 12 10 16 16 H 1.48498 * 109.47084 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.47267 * 300.00095 * 14 12 10 18 18 C 1.46932 * 118.73342 * 53.53882 * 9 8 7 19 19 C 1.53045 * 109.45960 * 205.00187 * 6 5 3 20 20 C 1.32996 * 119.99804 * 179.97438 * 2 1 3 21 21 C 1.51404 * 136.31868 * 179.63025 * 20 2 1 22 22 C 1.53373 * 87.52000 * 206.05521 * 21 20 2 23 23 C 1.51407 * 136.31491 * 359.97438 * 20 2 1 24 24 H 1.09002 * 109.47524 * 90.00304 * 1 2 3 25 25 H 1.08999 * 109.47880 * 210.00586 * 1 2 3 26 26 H 1.09002 * 109.47175 * 330.00494 * 1 2 3 27 27 H 0.96995 * 120.00081 * 0.02562 * 5 3 2 28 28 H 1.09001 * 109.45637 * 324.97326 * 6 5 3 29 29 H 1.09002 * 109.39343 * 61.36736 * 7 6 5 30 30 H 1.09003 * 109.62467 * 301.25963 * 7 6 5 31 31 H 1.09000 * 109.58250 * 185.72113 * 8 7 6 32 32 H 1.08995 * 109.58477 * 65.43833 * 8 7 6 33 33 H 0.96995 * 120.00379 * 180.02562 * 13 12 10 34 34 H 1.08996 * 109.59017 * 66.18099 * 18 9 8 35 35 H 1.09009 * 109.58200 * 186.46074 * 18 9 8 36 36 H 1.09002 * 109.49555 * 58.66185 * 19 6 5 37 37 H 1.08999 * 109.49562 * 298.56688 * 19 6 5 38 38 H 1.08995 * 113.55774 * 320.63991 * 21 20 2 39 39 H 1.08998 * 113.56166 * 91.37178 * 21 20 2 40 40 H 1.08995 * 113.97097 * 220.28557 * 22 21 20 41 41 H 1.09006 * 113.59981 * 88.79163 * 22 21 20 42 42 H 1.08996 * 113.56255 * 268.62757 * 23 20 2 43 43 H 1.09000 * 113.55891 * 39.36744 * 23 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2425 1.2738 0.0000 4 8 3.4587 1.2738 -0.0005 5 7 1.5687 2.4411 -0.0005 6 6 2.3012 3.7098 -0.0011 7 6 2.6696 4.0850 -1.4386 8 6 3.4623 5.3960 -1.4323 9 7 2.6848 6.4186 -0.7192 10 6 2.4126 7.6247 -1.3078 11 1 1.5224 8.1709 -1.0332 12 6 3.2809 8.1451 -2.2575 13 7 4.5058 7.6739 -2.3578 14 14 2.7110 9.5142 -3.3934 15 1 2.3140 10.6950 -2.5851 16 1 3.8177 9.8902 -4.3094 17 1 1.5482 9.0454 -4.1892 18 6 2.2053 6.1227 0.6378 19 6 1.4236 4.8056 0.6083 20 6 2.1719 -1.1518 0.0005 21 6 3.6249 -1.5773 -0.0060 22 6 3.1706 -2.8822 -0.6718 23 6 1.8136 -2.6229 0.0016 24 1 -0.3634 -0.0001 -1.0277 25 1 -0.3635 -0.8899 0.5139 26 1 -0.3633 0.8900 0.5138 27 1 0.5987 2.4411 -0.0005 28 1 3.2116 3.6036 0.5889 29 1 1.7591 4.2133 -2.0239 30 1 3.2774 3.2946 -1.8790 31 1 3.6395 5.7208 -2.4576 32 1 4.4161 5.2439 -0.9271 33 1 5.1127 8.0378 -3.0212 34 1 3.0555 6.0280 1.3133 35 1 1.5552 6.9283 0.9794 36 1 1.1445 4.5252 1.6240 37 1 0.5246 4.9294 0.0046 38 1 4.2565 -0.9607 -0.6455 39 1 4.0419 -1.7190 0.9910 40 1 3.6833 -3.7700 -0.3016 41 1 3.1396 -2.8291 -1.7601 42 1 1.7342 -3.0512 1.0008 43 1 0.9598 -2.8638 -0.6316 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001002770948.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:07:21 Heat of formation + Delta-G solvation = 14.108410 kcal Electronic energy + Delta-G solvation = -21901.302180 eV Core-core repulsion = 18754.702809 eV Total energy + Delta-G solvation = -3146.599371 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.98005 -38.57152 -37.13004 -34.39502 -33.32604 -31.83379 -29.97774 -29.33080 -26.71024 -25.69555 -25.13245 -23.26012 -22.19585 -21.73330 -20.20945 -19.45263 -18.03688 -16.81039 -16.33158 -15.94584 -15.68018 -14.88314 -14.61834 -14.32077 -13.86096 -13.60813 -13.45751 -13.23638 -12.96488 -12.63077 -12.58569 -12.46628 -12.35280 -12.04547 -11.75062 -11.45798 -11.12335 -11.08452 -10.89507 -10.70040 -10.58443 -10.35102 -10.22920 -10.02550 -9.72529 -9.69799 -9.33478 -8.96281 -8.60331 -8.37329 -6.65775 -5.76080 -3.19384 1.35767 3.38278 3.41515 3.45834 3.46775 3.47532 4.27795 4.37792 4.51376 4.57597 4.90495 4.91527 5.13078 5.32597 5.35449 5.42271 5.44168 5.46607 5.48786 5.57385 5.60959 5.67654 5.74052 5.87663 5.94370 6.07140 6.11542 6.18672 6.27608 6.41666 6.48630 6.58556 6.66951 6.68265 6.81983 6.95853 7.01129 7.40962 7.70761 7.81428 7.84457 8.47491 8.53203 9.23376 9.86727 10.43800 11.32428 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.033629 B = 0.003503 C = 0.003379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.408988 B = 7990.546997 C = 8284.754085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.164 4.164 3 C 0.552 3.448 4 O -0.540 6.540 5 N -0.722 5.722 6 C 0.151 3.849 7 C -0.146 4.146 8 C 0.174 3.826 9 N -0.593 5.593 10 C -0.255 4.255 11 H 0.065 0.935 12 C 0.003 3.997 13 N -0.901 5.901 14 Si 0.903 3.097 15 H -0.283 1.283 16 H -0.290 1.290 17 H -0.284 1.284 18 C 0.149 3.851 19 C -0.139 4.139 20 C -0.076 4.076 21 C -0.102 4.102 22 C -0.142 4.142 23 C -0.105 4.105 24 H 0.070 0.930 25 H 0.067 0.933 26 H 0.066 0.934 27 H 0.394 0.606 28 H 0.081 0.919 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.088 0.912 32 H 0.020 0.980 33 H 0.255 0.745 34 H 0.020 0.980 35 H 0.058 0.942 36 H 0.055 0.945 37 H 0.062 0.938 38 H 0.086 0.914 39 H 0.095 0.905 40 H 0.075 0.925 41 H 0.083 0.917 42 H 0.097 0.903 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.307 -19.103 5.238 21.479 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.167 4.167 3 C 0.340 3.660 4 O -0.419 6.419 5 N -0.372 5.372 6 C 0.048 3.952 7 C -0.186 4.186 8 C 0.048 3.952 9 N -0.315 5.315 10 C -0.385 4.385 11 H 0.083 0.917 12 C -0.196 4.196 13 N -0.545 5.545 14 Si 0.733 3.267 15 H -0.209 1.209 16 H -0.216 1.216 17 H -0.211 1.211 18 C 0.022 3.978 19 C -0.179 4.179 20 C -0.078 4.078 21 C -0.139 4.139 22 C -0.179 4.179 23 C -0.142 4.142 24 H 0.088 0.912 25 H 0.086 0.914 26 H 0.085 0.915 27 H 0.228 0.772 28 H 0.099 0.901 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.107 0.893 32 H 0.038 0.962 33 H 0.065 0.935 34 H 0.038 0.962 35 H 0.076 0.924 36 H 0.073 0.927 37 H 0.081 0.919 38 H 0.105 0.895 39 H 0.113 0.887 40 H 0.094 0.906 41 H 0.102 0.898 42 H 0.115 0.885 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -7.287 -18.998 5.124 20.983 hybrid contribution -0.769 0.722 -0.669 1.250 sum -8.056 -18.276 4.455 20.463 Atomic orbital electron populations 1.20665 0.90740 1.02711 1.02392 1.20559 0.95748 0.91679 1.08677 1.18216 0.87331 0.83814 0.76682 1.90775 1.13463 1.87662 1.50002 1.46264 1.10061 1.06115 1.74759 1.21030 0.95203 0.80851 0.98133 1.22560 1.00985 1.00239 0.94810 1.20747 0.90956 0.84154 0.99375 1.44093 1.63041 1.13654 1.10747 1.19132 1.03217 0.96727 1.19427 0.91706 1.25066 0.94608 0.98307 1.01616 1.70027 1.04096 1.44540 1.35872 0.86366 0.77623 0.81886 0.80845 1.20888 1.21635 1.21059 1.20835 0.95589 0.93101 0.88321 1.22330 0.99319 0.97027 0.99180 1.23189 0.98090 0.93535 0.92988 1.22153 0.94183 0.95759 1.01793 1.22718 0.96613 0.98211 1.00399 1.22278 0.98462 0.91858 1.01559 0.91161 0.91407 0.91517 0.77176 0.90105 0.92779 0.92873 0.89336 0.96171 0.93535 0.96230 0.92362 0.92660 0.91901 0.89515 0.88700 0.90590 0.89819 0.88451 0.90689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.95 9.57 36.00 0.34 -0.61 16 2 C -0.16 -2.03 6.00 -102.85 -0.62 -2.65 16 3 C 0.55 8.86 7.71 -12.67 -0.10 8.77 16 4 O -0.54 -10.69 14.82 5.26 0.08 -10.61 16 5 N -0.72 -10.84 5.02 -54.93 -0.28 -11.12 16 6 C 0.15 2.74 2.41 -67.87 -0.16 2.58 16 7 C -0.15 -3.01 5.66 -26.59 -0.15 -3.16 16 8 C 0.17 4.33 5.30 -3.71 -0.02 4.31 16 9 N -0.59 -15.05 3.00 -172.31 -0.52 -15.57 16 10 C -0.26 -7.06 9.58 -15.06 -0.14 -7.20 16 11 H 0.07 1.74 7.88 -52.49 -0.41 1.33 16 12 C 0.00 0.08 4.92 -17.43 -0.09 -0.01 16 13 N -0.90 -26.62 11.20 55.49 0.62 -26.00 16 14 Si 0.90 21.83 29.59 -169.99 -5.03 16.80 16 15 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 16 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 17 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 18 C 0.15 3.12 6.52 -3.71 -0.02 3.09 16 19 C -0.14 -2.37 5.55 -26.61 -0.15 -2.52 16 20 C -0.08 -0.88 6.60 -100.48 -0.66 -1.54 16 21 C -0.10 -1.16 6.99 -27.56 -0.19 -1.35 16 22 C -0.14 -1.19 8.17 -26.19 -0.21 -1.40 16 23 C -0.10 -0.84 7.72 -27.39 -0.21 -1.05 16 24 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.07 0.49 7.91 -51.93 -0.41 0.08 16 26 H 0.07 0.53 6.70 -51.93 -0.35 0.18 16 27 H 0.39 4.76 6.70 -40.82 -0.27 4.49 16 28 H 0.08 1.65 7.58 -51.93 -0.39 1.25 16 29 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 30 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 31 H 0.09 2.45 6.06 -51.93 -0.31 2.14 16 32 H 0.02 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.25 7.28 8.31 -40.82 -0.34 6.94 16 34 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.06 1.17 7.93 -51.92 -0.41 0.76 16 36 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 37 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 38 H 0.09 1.19 7.49 -51.93 -0.39 0.80 16 39 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 40 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 43 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 LS Contribution 341.89 15.07 5.15 5.15 Total: -1.00 -32.02 341.89 -9.52 -41.54 By element: Atomic # 1 Polarization: 9.68 SS G_CDS: -7.16 Total: 2.52 kcal Atomic # 6 Polarization: -0.34 SS G_CDS: -2.39 Total: -2.73 kcal Atomic # 7 Polarization: -52.51 SS G_CDS: -0.17 Total: -52.68 kcal Atomic # 8 Polarization: -10.69 SS G_CDS: 0.08 Total: -10.61 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -5.03 Total: 16.80 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.02 -9.52 -41.54 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001002770948.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.651 kcal (2) G-P(sol) polarization free energy of solvation -32.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.628 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.543 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds