Wall clock time and date at job start Tue Mar 31 2020 00:07:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.47095 * 120.00505 * 2 1 4 4 O 1.21617 * 120.00260 * 180.02562 * 3 2 1 5 5 N 1.34780 * 119.99718 * 359.97438 * 3 2 1 6 6 C 1.46503 * 119.99987 * 180.02562 * 5 3 2 7 7 C 1.53071 * 109.45178 * 84.78906 * 6 5 3 8 8 C 1.53201 * 109.29371 * 181.24494 * 7 6 5 9 9 N 1.46928 * 108.89275 * 305.57634 * 8 7 6 10 10 C 1.36934 * 120.63265 * 233.51651 * 9 8 7 11 11 H 1.07997 * 119.99862 * 151.82898 * 10 9 8 12 12 C 1.38806 * 120.00015 * 331.83027 * 10 9 8 13 13 N 1.31624 * 120.00191 * 343.08772 * 12 10 9 14 14 Si 1.86800 * 120.00146 * 163.08448 * 12 10 9 15 15 H 1.48503 * 109.47142 * 60.00161 * 14 12 10 16 16 H 1.48498 * 109.47084 * 180.02562 * 14 12 10 17 17 H 1.48500 * 109.47267 * 300.00095 * 14 12 10 18 18 C 1.46932 * 118.73342 * 53.53882 * 9 8 7 19 19 C 1.53045 * 109.45960 * 205.00187 * 6 5 3 20 20 C 1.32996 * 119.99804 * 179.97438 * 2 1 3 21 21 C 1.51404 * 136.31868 * 179.63025 * 20 2 1 22 22 C 1.53373 * 87.52000 * 206.05521 * 21 20 2 23 23 C 1.51407 * 136.31491 * 359.97438 * 20 2 1 24 24 H 1.09002 * 109.47524 * 90.00304 * 1 2 3 25 25 H 1.08999 * 109.47880 * 210.00586 * 1 2 3 26 26 H 1.09002 * 109.47175 * 330.00494 * 1 2 3 27 27 H 0.96995 * 120.00081 * 0.02562 * 5 3 2 28 28 H 1.09001 * 109.45637 * 324.97326 * 6 5 3 29 29 H 1.09002 * 109.39343 * 61.36736 * 7 6 5 30 30 H 1.09003 * 109.62467 * 301.25963 * 7 6 5 31 31 H 1.09000 * 109.58250 * 185.72113 * 8 7 6 32 32 H 1.08995 * 109.58477 * 65.43833 * 8 7 6 33 33 H 0.96995 * 120.00379 * 180.02562 * 13 12 10 34 34 H 1.08996 * 109.59017 * 66.18099 * 18 9 8 35 35 H 1.09009 * 109.58200 * 186.46074 * 18 9 8 36 36 H 1.09002 * 109.49555 * 58.66185 * 19 6 5 37 37 H 1.08999 * 109.49562 * 298.56688 * 19 6 5 38 38 H 1.08995 * 113.55774 * 320.63991 * 21 20 2 39 39 H 1.08998 * 113.56166 * 91.37178 * 21 20 2 40 40 H 1.08995 * 113.97097 * 220.28557 * 22 21 20 41 41 H 1.09006 * 113.59981 * 88.79163 * 22 21 20 42 42 H 1.08996 * 113.56255 * 268.62757 * 23 20 2 43 43 H 1.09000 * 113.55891 * 39.36744 * 23 20 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.2425 1.2738 0.0000 4 8 3.4587 1.2738 -0.0005 5 7 1.5687 2.4411 -0.0005 6 6 2.3012 3.7098 -0.0011 7 6 2.6696 4.0850 -1.4386 8 6 3.4623 5.3960 -1.4323 9 7 2.6848 6.4186 -0.7192 10 6 2.4126 7.6247 -1.3078 11 1 1.5224 8.1709 -1.0332 12 6 3.2809 8.1451 -2.2575 13 7 4.5058 7.6739 -2.3578 14 14 2.7110 9.5142 -3.3934 15 1 2.3140 10.6950 -2.5851 16 1 3.8177 9.8902 -4.3094 17 1 1.5482 9.0454 -4.1892 18 6 2.2053 6.1227 0.6378 19 6 1.4236 4.8056 0.6083 20 6 2.1719 -1.1518 0.0005 21 6 3.6249 -1.5773 -0.0060 22 6 3.1706 -2.8822 -0.6718 23 6 1.8136 -2.6229 0.0016 24 1 -0.3634 -0.0001 -1.0277 25 1 -0.3635 -0.8899 0.5139 26 1 -0.3633 0.8900 0.5138 27 1 0.5987 2.4411 -0.0005 28 1 3.2116 3.6036 0.5889 29 1 1.7591 4.2133 -2.0239 30 1 3.2774 3.2946 -1.8790 31 1 3.6395 5.7208 -2.4576 32 1 4.4161 5.2439 -0.9271 33 1 5.1127 8.0378 -3.0212 34 1 3.0555 6.0280 1.3133 35 1 1.5552 6.9283 0.9794 36 1 1.1445 4.5252 1.6240 37 1 0.5246 4.9294 0.0046 38 1 4.2565 -0.9607 -0.6455 39 1 4.0419 -1.7190 0.9910 40 1 3.6833 -3.7700 -0.3016 41 1 3.1396 -2.8291 -1.7601 42 1 1.7342 -3.0512 1.0008 43 1 0.9598 -2.8638 -0.6316 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001002770948.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:07:21 Heat of formation + Delta-G solvation = -5.510267 kcal Electronic energy + Delta-G solvation = -21902.152910 eV Core-core repulsion = 18754.702809 eV Total energy + Delta-G solvation = -3147.450101 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.18298 -39.64525 -38.67645 -36.01726 -34.49864 -33.47195 -31.73956 -31.06896 -27.46992 -27.04418 -26.38510 -24.60807 -23.93357 -23.12877 -21.38940 -21.09641 -19.29619 -18.60639 -17.39973 -17.30203 -16.76257 -16.48566 -15.86526 -15.80076 -15.38280 -15.27305 -14.81506 -14.63247 -14.39699 -14.06151 -13.81235 -13.32323 -13.27291 -13.22262 -13.02739 -12.84605 -12.66854 -12.57067 -12.45797 -12.14567 -12.08944 -11.91280 -11.83693 -11.56055 -11.47806 -11.32715 -10.62414 -10.58570 -10.08677 -9.70228 -8.73237 -7.88492 -5.35548 0.38662 1.46983 1.50042 1.56840 2.18943 2.30129 2.50994 3.27077 3.42811 3.58934 3.64657 3.82411 3.84848 4.02888 4.05800 4.24435 4.30592 4.43831 4.44284 4.63695 4.73808 4.74957 4.76274 4.81850 4.84129 4.86393 5.00996 5.02216 5.04521 5.05226 5.09883 5.10911 5.28607 5.36907 5.38734 5.43843 5.55836 5.62133 5.66635 5.76634 6.37005 6.65546 7.11571 7.31632 7.82347 8.35780 9.18589 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.033629 B = 0.003503 C = 0.003379 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.408988 B = 7990.546997 C = 8284.754085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.181 4.181 3 C 0.543 3.457 4 O -0.589 6.589 5 N -0.708 5.708 6 C 0.162 3.838 7 C -0.129 4.129 8 C 0.184 3.816 9 N -0.609 5.609 10 C -0.265 4.265 11 H 0.075 0.925 12 C -0.055 4.055 13 N -0.939 5.939 14 Si 0.972 3.028 15 H -0.272 1.272 16 H -0.297 1.297 17 H -0.276 1.276 18 C 0.142 3.858 19 C -0.121 4.121 20 C -0.083 4.083 21 C -0.120 4.120 22 C -0.133 4.133 23 C -0.087 4.087 24 H 0.078 0.922 25 H 0.088 0.912 26 H 0.075 0.925 27 H 0.413 0.587 28 H 0.054 0.946 29 H 0.061 0.939 30 H 0.041 0.959 31 H 0.055 0.945 32 H -0.013 1.013 33 H 0.249 0.751 34 H 0.010 0.990 35 H 0.070 0.930 36 H 0.091 0.909 37 H 0.076 0.924 38 H 0.050 0.950 39 H 0.098 0.902 40 H 0.097 0.903 41 H 0.081 0.919 42 H 0.119 0.881 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.603 -20.783 5.944 24.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.184 4.184 3 C 0.333 3.667 4 O -0.471 6.471 5 N -0.359 5.359 6 C 0.057 3.943 7 C -0.169 4.169 8 C 0.057 3.943 9 N -0.333 5.333 10 C -0.394 4.394 11 H 0.092 0.908 12 C -0.250 4.250 13 N -0.585 5.585 14 Si 0.799 3.201 15 H -0.198 1.198 16 H -0.223 1.223 17 H -0.202 1.202 18 C 0.016 3.984 19 C -0.160 4.160 20 C -0.084 4.084 21 C -0.157 4.157 22 C -0.170 4.170 23 C -0.124 4.124 24 H 0.096 0.904 25 H 0.107 0.893 26 H 0.093 0.907 27 H 0.251 0.749 28 H 0.072 0.928 29 H 0.080 0.920 30 H 0.060 0.940 31 H 0.073 0.927 32 H 0.005 0.995 33 H 0.058 0.942 34 H 0.028 0.972 35 H 0.088 0.912 36 H 0.110 0.890 37 H 0.095 0.905 38 H 0.069 0.931 39 H 0.117 0.883 40 H 0.115 0.885 41 H 0.100 0.900 42 H 0.137 0.863 43 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -10.655 -20.693 5.858 24.001 hybrid contribution 0.362 1.212 -0.833 1.514 sum -10.293 -19.481 5.025 22.599 Atomic orbital electron populations 1.20711 0.87681 1.04209 1.03338 1.20617 0.97631 0.89728 1.10383 1.18973 0.87040 0.85223 0.75439 1.90759 1.15780 1.88384 1.52157 1.45980 1.10829 1.04725 1.74383 1.20653 0.95123 0.82868 0.95674 1.22301 1.00201 0.97402 0.97033 1.20439 0.90582 0.86236 0.96998 1.44339 1.63074 1.13257 1.12616 1.19553 1.03268 0.97253 1.19375 0.90754 1.25912 0.94628 1.01087 1.03345 1.70210 1.05371 1.46336 1.36593 0.85278 0.76909 0.79217 0.78663 1.19753 1.22350 1.20183 1.21044 0.95820 0.95705 0.85863 1.22134 0.98440 0.93982 1.01484 1.23707 0.98256 0.95440 0.91037 1.22298 0.94143 0.97444 1.01766 1.22704 0.96951 0.97104 1.00213 1.22308 0.98640 0.88426 1.02982 0.90378 0.89320 0.90651 0.74941 0.92808 0.92049 0.94013 0.92674 0.99464 0.94163 0.97174 0.91201 0.89028 0.90531 0.93101 0.88341 0.88463 0.90012 0.86275 0.88717 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.45 9.57 71.23 0.68 -0.77 16 2 C -0.18 -4.18 6.00 -18.71 -0.11 -4.29 16 3 C 0.54 17.35 7.71 86.57 0.67 18.02 16 4 O -0.59 -24.31 14.82 -4.09 -0.06 -24.37 16 5 N -0.71 -20.34 5.02 -445.94 -2.24 -22.58 16 6 C 0.16 5.82 2.41 45.03 0.11 5.93 16 7 C -0.13 -5.47 5.66 30.69 0.17 -5.30 16 8 C 0.18 9.63 5.30 86.37 0.46 10.08 16 9 N -0.61 -31.44 3.00 -699.07 -2.09 -33.53 16 10 C -0.26 -14.68 9.58 84.03 0.81 -13.88 16 11 H 0.07 3.91 7.88 -2.91 -0.02 3.89 16 12 C -0.05 -3.11 4.92 84.86 0.42 -2.70 16 13 N -0.94 -57.67 11.20 21.65 0.24 -57.42 16 14 Si 0.97 45.38 29.59 68.60 2.03 47.41 16 15 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 16 H -0.30 -14.07 7.11 99.48 0.71 -13.36 16 17 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 18 C 0.14 5.84 6.52 86.36 0.56 6.40 16 19 C -0.12 -3.87 5.55 30.67 0.17 -3.70 16 20 C -0.08 -1.76 6.60 -17.17 -0.11 -1.88 16 21 C -0.12 -2.70 6.99 30.06 0.21 -2.49 16 22 C -0.13 -1.93 8.17 30.95 0.25 -1.68 16 23 C -0.09 -1.09 7.72 30.17 0.23 -0.85 16 24 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 25 H 0.09 0.90 7.91 -2.39 -0.02 0.88 16 26 H 0.07 0.91 6.70 -2.39 -0.02 0.89 16 27 H 0.41 8.79 6.70 -92.71 -0.62 8.17 16 28 H 0.05 2.26 7.58 -2.39 -0.02 2.24 16 29 H 0.06 2.50 8.14 -2.39 -0.02 2.48 16 30 H 0.04 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.05 3.23 6.06 -2.39 -0.01 3.21 16 32 H -0.01 -0.73 8.14 -2.39 -0.02 -0.75 16 33 H 0.25 14.87 8.31 -92.71 -0.77 14.10 16 34 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 35 H 0.07 2.70 7.93 -2.38 -0.02 2.68 16 36 H 0.09 2.34 8.14 -2.39 -0.02 2.32 16 37 H 0.08 2.30 8.14 -2.39 -0.02 2.28 16 38 H 0.05 1.50 7.49 -2.39 -0.02 1.48 16 39 H 0.10 2.09 8.14 -2.39 -0.02 2.07 16 40 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.08 1.23 8.14 -2.38 -0.02 1.21 16 42 H 0.12 1.05 8.14 -2.39 -0.02 1.03 16 43 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 Total: -1.00 -73.59 341.89 2.76 -70.83 By element: Atomic # 1 Polarization: 16.41 SS G_CDS: 0.37 Total: 16.78 kcal Atomic # 6 Polarization: -1.61 SS G_CDS: 4.51 Total: 2.90 kcal Atomic # 7 Polarization: -109.45 SS G_CDS: -4.09 Total: -113.54 kcal Atomic # 8 Polarization: -24.31 SS G_CDS: -0.06 Total: -24.37 kcal Atomic # 14 Polarization: 45.38 SS G_CDS: 2.03 Total: 47.41 kcal Total: -73.59 2.76 -70.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001002770948.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.316 kcal (2) G-P(sol) polarization free energy of solvation -73.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.760 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.826 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.510 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds