Wall clock time and date at job start Tue Mar 31 2020 00:08:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.47105 * 120.00120 * 2 1 4 4 O 1.21614 * 119.99669 * 179.97438 * 3 2 1 5 5 N 1.34775 * 120.00067 * 359.97438 * 3 2 1 6 6 C 1.46497 * 120.00093 * 180.02562 * 5 3 2 7 7 H 1.09005 * 109.49866 * 325.07326 * 6 5 3 8 8 C 1.53039 * 109.50065 * 205.00129 * 6 5 3 9 9 C 1.53035 * 109.53913 * 178.64917 * 8 6 5 10 10 C 1.53199 * 109.30939 * 61.36947 * 9 8 6 11 11 N 1.46921 * 108.77728 * 305.36205 * 10 9 8 12 12 C 1.36934 * 120.63469 * 233.58815 * 11 10 9 13 13 H 1.07997 * 120.00732 * 152.05270 * 12 11 10 14 14 C 1.38819 * 119.99528 * 332.05397 * 12 11 10 15 15 N 1.31612 * 119.99824 * 335.33811 * 14 12 11 16 16 Si 1.86795 * 120.00002 * 155.34236 * 14 12 11 17 17 H 1.48495 * 109.47350 * 179.97438 * 16 14 12 18 18 H 1.48503 * 109.47440 * 59.99449 * 16 14 12 19 19 H 1.48504 * 109.47119 * 300.00193 * 16 14 12 20 20 C 1.46932 * 118.73683 * 53.86158 * 11 10 9 21 21 C 1.32994 * 120.00010 * 179.97438 * 2 1 3 22 22 C 1.51404 * 136.31657 * 179.63157 * 21 2 1 23 23 C 1.53386 * 87.51826 * 206.05808 * 22 21 2 24 24 C 1.51406 * 136.31477 * 0.02562 * 21 2 1 25 25 H 1.09004 * 109.46829 * 90.00421 * 1 2 3 26 26 H 1.08994 * 109.47016 * 210.00663 * 1 2 3 27 27 H 1.09006 * 109.46886 * 330.00861 * 1 2 3 28 28 H 0.96998 * 119.99907 * 0.02562 * 5 3 2 29 29 H 1.09001 * 109.45666 * 58.63312 * 8 6 5 30 30 H 1.08997 * 109.46018 * 298.67935 * 8 6 5 31 31 H 1.08997 * 109.50354 * 301.41793 * 9 8 6 32 32 H 1.08999 * 109.49835 * 181.31756 * 9 8 6 33 33 H 1.08998 * 109.58737 * 185.57631 * 10 9 8 34 34 H 1.09000 * 109.70042 * 65.22161 * 10 9 8 35 35 H 0.97002 * 120.00681 * 354.25216 * 15 14 12 36 36 H 1.08998 * 109.58755 * 65.92703 * 20 11 10 37 37 H 1.09004 * 109.58577 * 186.35259 * 20 11 10 38 38 H 1.09003 * 113.56472 * 320.63987 * 22 21 2 39 39 H 1.08998 * 113.56216 * 91.37581 * 22 21 2 40 40 H 1.09000 * 113.96573 * 220.29489 * 23 22 21 41 41 H 1.08995 * 113.70913 * 88.80852 * 23 22 21 42 42 H 1.09005 * 113.56160 * 268.62180 * 24 21 2 43 43 H 1.08996 * 113.56590 * 39.28580 * 24 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2426 1.2739 0.0000 4 8 3.4587 1.2739 0.0005 5 7 1.5687 2.4412 -0.0005 6 6 2.3012 3.7098 -0.0011 7 1 3.2127 3.6040 0.5873 8 6 1.4244 4.8063 0.6081 9 6 2.2010 6.1246 0.6388 10 6 2.5615 6.5336 -0.7928 11 7 3.2805 5.4247 -1.4346 12 6 4.5027 5.6298 -2.0172 13 1 5.2148 4.8201 -2.0777 14 6 4.8263 6.8785 -2.5298 15 7 3.8719 7.7027 -2.9066 16 14 6.6164 7.3891 -2.6850 17 1 6.6932 8.7574 -3.2566 18 1 7.3265 6.4392 -3.5788 19 1 7.2530 7.3760 -1.3434 20 6 2.6604 4.0927 -1.4449 21 6 2.1720 -1.1518 0.0005 22 6 3.6250 -1.5771 -0.0060 23 6 3.1708 -2.8821 -0.6719 24 6 1.8138 -2.6228 0.0007 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3633 -0.8899 0.5139 27 1 -0.3633 0.8901 0.5137 28 1 0.5987 2.4412 -0.0005 29 1 1.1453 4.5255 1.6237 30 1 0.5247 4.9286 0.0052 31 1 3.1133 5.9961 1.2211 32 1 1.5843 6.8995 1.0942 33 1 3.1984 7.4179 -0.7708 34 1 1.6521 6.7522 -1.3526 35 1 2.9478 7.4080 -2.9048 36 1 1.7576 4.1146 -2.0554 37 1 3.3626 3.3658 -1.8533 38 1 4.2567 -0.9605 -0.6455 39 1 4.0420 -1.7189 0.9910 40 1 3.6834 -3.7699 -0.3016 41 1 3.1395 -2.8310 -1.7602 42 1 1.7336 -3.0517 0.9997 43 1 0.9596 -2.8634 -0.6322 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001007298690.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:08:11 Heat of formation + Delta-G solvation = 12.104314 kcal Electronic energy + Delta-G solvation = -22082.686966 eV Core-core repulsion = 18936.000691 eV Total energy + Delta-G solvation = -3146.686276 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -39.97498 -38.58693 -37.28897 -34.46681 -33.36571 -32.19583 -30.36804 -28.54287 -26.69876 -25.65485 -25.06524 -23.55904 -22.20896 -21.70808 -20.20617 -19.50314 -18.00047 -17.34735 -16.44524 -15.89885 -15.66490 -14.79758 -14.60739 -14.11698 -14.01983 -13.69509 -13.55988 -13.43036 -13.02600 -12.69697 -12.57865 -12.53472 -12.32013 -12.07452 -11.93396 -11.73150 -11.14030 -11.09481 -10.72122 -10.65835 -10.56489 -10.33293 -10.05011 -9.99644 -9.94834 -9.42160 -9.27356 -8.97096 -8.76810 -8.25397 -6.84100 -6.02137 -3.18786 1.36812 3.36090 3.48115 3.55233 3.57849 3.76039 4.28154 4.37929 4.59305 4.65850 4.90232 4.92889 5.12963 5.23303 5.34679 5.36566 5.41296 5.43571 5.48069 5.56723 5.60671 5.61944 5.64213 5.75144 5.95723 5.99126 6.06692 6.09601 6.15090 6.22354 6.41474 6.46118 6.57210 6.62619 6.66571 6.77193 6.95073 7.09921 7.20969 7.82262 8.08438 8.53246 8.62916 9.15825 9.89547 10.32180 11.26150 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.022314 B = 0.004204 C = 0.003709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.492799 B = 6658.097439 C = 7547.743252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.164 4.164 3 C 0.552 3.448 4 O -0.536 6.536 5 N -0.720 5.720 6 C 0.127 3.873 7 H 0.086 0.914 8 C -0.115 4.115 9 C -0.134 4.134 10 C 0.147 3.853 11 N -0.595 5.595 12 C -0.347 4.347 13 H 0.057 0.943 14 C -0.024 4.024 15 N -0.918 5.918 16 Si 1.065 2.935 17 H -0.286 1.286 18 H -0.293 1.293 19 H -0.293 1.293 20 C 0.145 3.855 21 C -0.075 4.075 22 C -0.103 4.103 23 C -0.142 4.142 24 C -0.104 4.104 25 H 0.070 0.930 26 H 0.067 0.933 27 H 0.065 0.935 28 H 0.394 0.606 29 H 0.053 0.947 30 H 0.058 0.942 31 H 0.061 0.939 32 H 0.056 0.944 33 H 0.081 0.919 34 H 0.017 0.983 35 H 0.268 0.732 36 H 0.015 0.985 37 H 0.059 0.941 38 H 0.087 0.913 39 H 0.095 0.905 40 H 0.075 0.925 41 H 0.084 0.916 42 H 0.097 0.903 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.097 -17.090 7.965 20.935 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.167 4.167 3 C 0.340 3.660 4 O -0.414 6.414 5 N -0.371 5.371 6 C 0.021 3.979 7 H 0.105 0.895 8 C -0.153 4.153 9 C -0.173 4.173 10 C 0.021 3.979 11 N -0.319 5.319 12 C -0.476 4.476 13 H 0.074 0.926 14 C -0.226 4.226 15 N -0.558 5.558 16 Si 0.894 3.106 17 H -0.211 1.211 18 H -0.220 1.220 19 H -0.220 1.220 20 C 0.018 3.982 21 C -0.077 4.077 22 C -0.139 4.139 23 C -0.179 4.179 24 C -0.141 4.141 25 H 0.089 0.911 26 H 0.086 0.914 27 H 0.084 0.916 28 H 0.228 0.772 29 H 0.072 0.928 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.075 0.925 33 H 0.099 0.901 34 H 0.035 0.965 35 H 0.079 0.921 36 H 0.033 0.967 37 H 0.077 0.923 38 H 0.105 0.895 39 H 0.113 0.887 40 H 0.094 0.906 41 H 0.102 0.898 42 H 0.115 0.885 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -7.169 -15.802 7.522 18.913 hybrid contribution -1.630 -1.317 0.379 2.130 sum -8.799 -17.119 7.901 20.807 Atomic orbital electron populations 1.20663 0.90744 1.02652 1.02401 1.20532 0.95718 0.91612 1.08829 1.18212 0.87349 0.83761 0.76721 1.90798 1.13430 1.87557 1.49577 1.46063 1.09924 1.06017 1.75137 1.21776 0.95164 0.80782 1.00141 0.89549 1.21672 0.98399 0.95756 0.99489 1.22053 0.99361 0.95227 1.00700 1.21004 0.95381 0.92659 0.88834 1.44077 1.20300 1.03479 1.64043 1.20020 0.90918 1.00145 1.36489 0.92552 1.25850 1.05958 0.94918 0.95829 1.70784 1.01882 1.39662 1.43497 0.83529 0.74843 0.76016 0.76168 1.21109 1.21973 1.22009 1.21267 0.96110 0.88855 0.92009 1.23192 0.98123 0.93537 0.92839 1.22160 0.94186 0.95789 1.01804 1.22709 0.96563 0.98201 1.00441 1.22271 0.98486 0.91810 1.01558 0.91133 0.91395 0.91596 0.77203 0.92843 0.92294 0.92054 0.92516 0.90056 0.96496 0.92132 0.96721 0.92282 0.89457 0.88693 0.90590 0.89787 0.88466 0.90677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.96 9.57 36.01 0.34 -0.62 16 2 C -0.16 -2.09 6.00 -102.84 -0.62 -2.71 16 3 C 0.55 9.18 7.72 -12.66 -0.10 9.08 16 4 O -0.54 -11.11 14.81 5.27 0.08 -11.03 16 5 N -0.72 -11.08 5.03 -54.65 -0.27 -11.35 16 6 C 0.13 2.38 2.62 -67.58 -0.18 2.20 16 7 H 0.09 1.87 7.58 -51.93 -0.39 1.48 16 8 C -0.11 -1.89 5.35 -26.69 -0.14 -2.03 16 9 C -0.13 -2.51 6.08 -26.61 -0.16 -2.67 16 10 C 0.15 3.47 4.69 -3.71 -0.02 3.45 16 11 N -0.60 -15.51 2.84 -172.04 -0.49 -16.00 16 12 C -0.35 -10.12 9.49 -15.06 -0.14 -10.27 16 13 H 0.06 1.69 7.94 -52.49 -0.42 1.28 16 14 C -0.02 -0.70 4.69 -17.43 -0.08 -0.78 16 15 N -0.92 -27.91 12.41 55.49 0.69 -27.22 16 16 Si 1.06 26.04 29.98 -169.99 -5.10 20.95 16 17 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 18 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 19 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 20 C 0.15 3.30 6.12 -3.48 -0.02 3.28 16 21 C -0.08 -0.89 6.60 -100.48 -0.66 -1.56 16 22 C -0.10 -1.22 6.99 -27.55 -0.19 -1.41 16 23 C -0.14 -1.25 8.17 -26.20 -0.21 -1.46 16 24 C -0.10 -0.87 7.71 -27.41 -0.21 -1.08 16 25 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 26 H 0.07 0.50 7.91 -51.93 -0.41 0.09 16 27 H 0.07 0.52 6.70 -51.93 -0.35 0.17 16 28 H 0.39 4.75 6.70 -40.82 -0.27 4.48 16 29 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 31 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 32 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.08 2.15 6.31 -51.93 -0.33 1.82 16 34 H 0.02 0.40 7.85 -51.93 -0.41 0.00 16 35 H 0.27 8.18 6.69 -40.82 -0.27 7.91 16 36 H 0.01 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.06 1.47 7.93 -51.93 -0.41 1.06 16 38 H 0.09 1.26 7.49 -51.93 -0.39 0.87 16 39 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 41 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 42 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.07 0.55 8.14 -51.93 -0.42 0.12 16 LS Contribution 340.86 15.07 5.14 5.14 Total: -1.00 -33.52 340.86 -9.45 -42.97 By element: Atomic # 1 Polarization: 10.23 SS G_CDS: -7.10 Total: 3.13 kcal Atomic # 6 Polarization: -4.18 SS G_CDS: -2.40 Total: -6.57 kcal Atomic # 7 Polarization: -54.50 SS G_CDS: -0.08 Total: -54.57 kcal Atomic # 8 Polarization: -11.11 SS G_CDS: 0.08 Total: -11.03 kcal Atomic # 14 Polarization: 26.04 SS G_CDS: -5.10 Total: 20.95 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -33.52 -9.45 -42.97 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007298690.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.071 kcal (2) G-P(sol) polarization free energy of solvation -33.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.967 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds