Wall clock time and date at job start Tue Mar 31 2020 00:08:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.47105 * 120.00120 * 2 1 4 4 O 1.21614 * 119.99669 * 179.97438 * 3 2 1 5 5 N 1.34775 * 120.00067 * 359.97438 * 3 2 1 6 6 C 1.46497 * 120.00093 * 180.02562 * 5 3 2 7 7 H 1.09005 * 109.49866 * 325.07326 * 6 5 3 8 8 C 1.53039 * 109.50065 * 205.00129 * 6 5 3 9 9 C 1.53035 * 109.53913 * 178.64917 * 8 6 5 10 10 C 1.53199 * 109.30939 * 61.36947 * 9 8 6 11 11 N 1.46921 * 108.77728 * 305.36205 * 10 9 8 12 12 C 1.36934 * 120.63469 * 233.58815 * 11 10 9 13 13 H 1.07997 * 120.00732 * 152.05270 * 12 11 10 14 14 C 1.38819 * 119.99528 * 332.05397 * 12 11 10 15 15 N 1.31612 * 119.99824 * 335.33811 * 14 12 11 16 16 Si 1.86795 * 120.00002 * 155.34236 * 14 12 11 17 17 H 1.48495 * 109.47350 * 179.97438 * 16 14 12 18 18 H 1.48503 * 109.47440 * 59.99449 * 16 14 12 19 19 H 1.48504 * 109.47119 * 300.00193 * 16 14 12 20 20 C 1.46932 * 118.73683 * 53.86158 * 11 10 9 21 21 C 1.32994 * 120.00010 * 179.97438 * 2 1 3 22 22 C 1.51404 * 136.31657 * 179.63157 * 21 2 1 23 23 C 1.53386 * 87.51826 * 206.05808 * 22 21 2 24 24 C 1.51406 * 136.31477 * 0.02562 * 21 2 1 25 25 H 1.09004 * 109.46829 * 90.00421 * 1 2 3 26 26 H 1.08994 * 109.47016 * 210.00663 * 1 2 3 27 27 H 1.09006 * 109.46886 * 330.00861 * 1 2 3 28 28 H 0.96998 * 119.99907 * 0.02562 * 5 3 2 29 29 H 1.09001 * 109.45666 * 58.63312 * 8 6 5 30 30 H 1.08997 * 109.46018 * 298.67935 * 8 6 5 31 31 H 1.08997 * 109.50354 * 301.41793 * 9 8 6 32 32 H 1.08999 * 109.49835 * 181.31756 * 9 8 6 33 33 H 1.08998 * 109.58737 * 185.57631 * 10 9 8 34 34 H 1.09000 * 109.70042 * 65.22161 * 10 9 8 35 35 H 0.97002 * 120.00681 * 354.25216 * 15 14 12 36 36 H 1.08998 * 109.58755 * 65.92703 * 20 11 10 37 37 H 1.09004 * 109.58577 * 186.35259 * 20 11 10 38 38 H 1.09003 * 113.56472 * 320.63987 * 22 21 2 39 39 H 1.08998 * 113.56216 * 91.37581 * 22 21 2 40 40 H 1.09000 * 113.96573 * 220.29489 * 23 22 21 41 41 H 1.08995 * 113.70913 * 88.80852 * 23 22 21 42 42 H 1.09005 * 113.56160 * 268.62180 * 24 21 2 43 43 H 1.08996 * 113.56590 * 39.28580 * 24 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2426 1.2739 0.0000 4 8 3.4587 1.2739 0.0005 5 7 1.5687 2.4412 -0.0005 6 6 2.3012 3.7098 -0.0011 7 1 3.2127 3.6040 0.5873 8 6 1.4244 4.8063 0.6081 9 6 2.2010 6.1246 0.6388 10 6 2.5615 6.5336 -0.7928 11 7 3.2805 5.4247 -1.4346 12 6 4.5027 5.6298 -2.0172 13 1 5.2148 4.8201 -2.0777 14 6 4.8263 6.8785 -2.5298 15 7 3.8719 7.7027 -2.9066 16 14 6.6164 7.3891 -2.6850 17 1 6.6932 8.7574 -3.2566 18 1 7.3265 6.4392 -3.5788 19 1 7.2530 7.3760 -1.3434 20 6 2.6604 4.0927 -1.4449 21 6 2.1720 -1.1518 0.0005 22 6 3.6250 -1.5771 -0.0060 23 6 3.1708 -2.8821 -0.6719 24 6 1.8138 -2.6228 0.0007 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3633 -0.8899 0.5139 27 1 -0.3633 0.8901 0.5137 28 1 0.5987 2.4412 -0.0005 29 1 1.1453 4.5255 1.6237 30 1 0.5247 4.9286 0.0052 31 1 3.1133 5.9961 1.2211 32 1 1.5843 6.8995 1.0942 33 1 3.1984 7.4179 -0.7708 34 1 1.6521 6.7522 -1.3526 35 1 2.9478 7.4080 -2.9048 36 1 1.7576 4.1146 -2.0554 37 1 3.3626 3.3658 -1.8533 38 1 4.2567 -0.9605 -0.6455 39 1 4.0420 -1.7189 0.9910 40 1 3.6834 -3.7699 -0.3016 41 1 3.1395 -2.8310 -1.7602 42 1 1.7336 -3.0517 0.9997 43 1 0.9596 -2.8634 -0.6322 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001007298690.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:08:10 Heat of formation + Delta-G solvation = -9.258990 kcal Electronic energy + Delta-G solvation = -22083.613349 eV Core-core repulsion = 18936.000691 eV Total energy + Delta-G solvation = -3147.612658 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.23486 -39.73929 -38.82701 -36.16885 -34.66560 -33.61997 -32.32655 -30.18549 -27.47912 -27.13679 -26.43422 -24.85379 -23.98152 -23.10141 -21.44738 -21.15971 -19.46106 -19.16353 -17.46206 -17.28334 -16.57357 -16.29304 -16.24611 -15.80913 -15.49689 -15.47035 -15.02625 -14.79098 -14.35134 -14.10070 -13.87115 -13.66740 -13.34798 -13.29672 -13.03988 -12.87421 -12.63889 -12.53734 -12.41703 -11.97743 -11.92026 -11.88897 -11.84742 -11.73967 -11.42373 -11.27976 -10.70946 -10.61487 -10.20156 -9.76899 -8.98173 -8.31249 -5.47742 0.34940 1.53941 1.61099 1.81489 2.09357 2.25739 2.61448 3.15014 3.36243 3.53629 3.58463 3.75311 3.81026 3.97814 3.99240 4.09025 4.21528 4.30387 4.37790 4.41761 4.64420 4.69393 4.71783 4.72529 4.78235 4.83074 4.86948 4.97896 4.98753 5.00873 5.03234 5.07411 5.11671 5.22065 5.34368 5.36222 5.37438 5.50930 5.72921 5.77029 6.34159 6.59973 6.99436 7.27583 7.71172 8.12372 8.92734 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.022314 B = 0.004204 C = 0.003709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.492799 B = 6658.097439 C = 7547.743252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C -0.180 4.180 3 C 0.542 3.458 4 O -0.590 6.590 5 N -0.706 5.706 6 C 0.143 3.857 7 H 0.052 0.948 8 C -0.104 4.104 9 C -0.125 4.125 10 C 0.150 3.850 11 N -0.615 5.615 12 C -0.364 4.364 13 H 0.034 0.966 14 C -0.067 4.067 15 N -0.935 5.935 16 Si 1.114 2.886 17 H -0.282 1.282 18 H -0.280 1.280 19 H -0.280 1.280 20 C 0.148 3.852 21 C -0.082 4.082 22 C -0.121 4.121 23 C -0.132 4.132 24 C -0.085 4.085 25 H 0.077 0.923 26 H 0.090 0.910 27 H 0.076 0.924 28 H 0.414 0.586 29 H 0.090 0.910 30 H 0.079 0.921 31 H 0.047 0.953 32 H 0.092 0.908 33 H 0.046 0.954 34 H 0.015 0.985 35 H 0.256 0.744 36 H 0.022 0.978 37 H 0.021 0.979 38 H 0.047 0.953 39 H 0.099 0.901 40 H 0.098 0.902 41 H 0.080 0.920 42 H 0.121 0.879 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.359 -18.746 9.381 23.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.183 4.183 3 C 0.332 3.668 4 O -0.471 6.471 5 N -0.358 5.358 6 C 0.036 3.964 7 H 0.071 0.929 8 C -0.142 4.142 9 C -0.164 4.164 10 C 0.025 3.975 11 N -0.340 5.340 12 C -0.493 4.493 13 H 0.052 0.948 14 C -0.264 4.264 15 N -0.576 5.576 16 Si 0.937 3.063 17 H -0.208 1.208 18 H -0.206 1.206 19 H -0.207 1.207 20 C 0.021 3.979 21 C -0.084 4.084 22 C -0.158 4.158 23 C -0.170 4.170 24 C -0.121 4.121 25 H 0.096 0.904 26 H 0.109 0.891 27 H 0.095 0.905 28 H 0.252 0.748 29 H 0.109 0.891 30 H 0.098 0.902 31 H 0.066 0.934 32 H 0.110 0.890 33 H 0.065 0.935 34 H 0.033 0.967 35 H 0.066 0.934 36 H 0.040 0.960 37 H 0.040 0.960 38 H 0.065 0.935 39 H 0.117 0.883 40 H 0.117 0.883 41 H 0.099 0.901 42 H 0.139 0.861 43 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -9.506 -17.485 8.956 21.824 hybrid contribution -0.869 -0.860 -0.098 1.227 sum -10.375 -18.344 8.858 22.861 Atomic orbital electron populations 1.20717 0.87434 1.04327 1.03371 1.20613 0.97737 0.89516 1.10482 1.19048 0.87031 0.85344 0.75380 1.90778 1.16003 1.88366 1.51990 1.45831 1.10787 1.04594 1.74577 1.21286 0.95254 0.83251 0.96620 0.92949 1.21617 0.97805 0.93000 1.01757 1.21930 0.99897 0.97675 0.96909 1.20961 0.94047 0.90753 0.91722 1.44286 1.19993 1.05149 1.64611 1.20144 0.92152 1.00001 1.37027 0.94772 1.27191 1.09126 0.94853 0.95194 1.70895 1.01608 1.39918 1.45172 0.82886 0.70556 0.75888 0.76926 1.20772 1.20637 1.20661 1.21278 0.94987 0.86695 0.94896 1.23728 0.98199 0.95558 0.90925 1.22311 0.94209 0.97524 1.01752 1.22694 0.97037 0.97035 1.00185 1.22296 0.98580 0.88193 1.03066 0.90391 0.89142 0.90538 0.74751 0.89119 0.90219 0.93394 0.88972 0.93522 0.96722 0.93410 0.96022 0.95998 0.93458 0.88263 0.88345 0.90114 0.86108 0.88591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.48 9.57 71.24 0.68 -0.80 16 2 C -0.18 -4.38 6.00 -18.70 -0.11 -4.50 16 3 C 0.54 18.32 7.72 86.57 0.67 18.98 16 4 O -0.59 -26.06 14.81 -4.08 -0.06 -26.12 16 5 N -0.71 -21.18 5.03 -445.06 -2.24 -23.42 16 6 C 0.14 5.37 2.62 45.22 0.12 5.49 16 7 H 0.05 2.36 7.58 -2.38 -0.02 2.34 16 8 C -0.10 -3.15 5.35 30.62 0.16 -2.98 16 9 C -0.12 -4.51 6.08 30.67 0.19 -4.33 16 10 C 0.15 7.21 4.69 86.37 0.40 7.61 16 11 N -0.62 -33.34 2.84 -698.23 -1.99 -35.33 16 12 C -0.36 -22.23 9.49 84.04 0.80 -21.44 16 13 H 0.03 2.19 7.94 -2.91 -0.02 2.17 16 14 C -0.07 -3.99 4.69 84.86 0.40 -3.59 16 15 N -0.93 -58.29 12.41 21.65 0.27 -58.02 16 16 Si 1.11 53.70 29.98 68.60 2.06 55.75 16 17 H -0.28 -13.40 7.11 99.48 0.71 -12.70 16 18 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 19 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 20 C 0.15 7.01 6.12 86.51 0.53 7.54 16 21 C -0.08 -1.86 6.60 -17.17 -0.11 -1.97 16 22 C -0.12 -2.93 6.99 30.06 0.21 -2.72 16 23 C -0.13 -2.08 8.17 30.94 0.25 -1.83 16 24 C -0.08 -1.12 7.71 30.15 0.23 -0.89 16 25 H 0.08 1.03 8.14 -2.38 -0.02 1.01 16 26 H 0.09 0.93 7.91 -2.39 -0.02 0.91 16 27 H 0.08 0.93 6.70 -2.38 -0.02 0.91 16 28 H 0.41 8.96 6.70 -92.71 -0.62 8.34 16 29 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 30 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 31 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.09 2.72 8.14 -2.39 -0.02 2.70 16 33 H 0.05 2.54 6.31 -2.39 -0.02 2.52 16 34 H 0.01 0.71 7.85 -2.39 -0.02 0.69 16 35 H 0.26 16.15 6.69 -92.71 -0.62 15.53 16 36 H 0.02 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.02 1.15 7.93 -2.39 -0.02 1.13 16 38 H 0.05 1.50 7.49 -2.39 -0.02 1.48 16 39 H 0.10 2.24 8.14 -2.39 -0.02 2.22 16 40 H 0.10 1.13 8.14 -2.39 -0.02 1.11 16 41 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 42 H 0.12 1.12 8.14 -2.38 -0.02 1.10 16 43 H 0.10 0.96 8.14 -2.39 -0.02 0.94 16 Total: -1.00 -78.99 340.86 2.98 -76.01 By element: Atomic # 1 Polarization: 16.01 SS G_CDS: 0.52 Total: 16.53 kcal Atomic # 6 Polarization: -9.83 SS G_CDS: 4.42 Total: -5.41 kcal Atomic # 7 Polarization: -112.82 SS G_CDS: -3.95 Total: -116.77 kcal Atomic # 8 Polarization: -26.06 SS G_CDS: -0.06 Total: -26.12 kcal Atomic # 14 Polarization: 53.70 SS G_CDS: 2.06 Total: 55.75 kcal Total: -78.99 2.98 -76.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007298690.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.755 kcal (2) G-P(sol) polarization free energy of solvation -78.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.240 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.981 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.014 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds