Wall clock time and date at job start Tue Mar 31 2020 00:09:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.47102 * 119.99710 * 2 1 4 4 O 1.21609 * 119.99833 * 180.02562 * 3 2 1 5 5 N 1.34783 * 119.99792 * 359.97438 * 3 2 1 6 6 C 1.46503 * 119.99597 * 180.02562 * 5 3 2 7 7 H 1.08999 * 112.90897 * 336.25374 * 6 5 3 8 8 C 1.53959 * 113.66510 * 107.44407 * 6 5 3 9 9 C 1.53781 * 87.01918 * 139.93252 * 8 6 5 10 10 H 1.09001 * 113.61536 * 89.22969 * 9 8 6 11 11 N 1.46498 * 113.61116 * 220.04907 * 9 8 6 12 12 C 1.36936 * 119.99972 * 254.13327 * 11 9 8 13 13 H 1.08002 * 119.99631 * 0.02562 * 12 11 9 14 14 C 1.38806 * 120.00202 * 180.02562 * 12 11 9 15 15 N 1.31624 * 120.00103 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 120.00201 * 179.72570 * 14 12 11 17 17 H 1.48494 * 109.47228 * 180.27680 * 16 14 12 18 18 H 1.48500 * 109.47000 * 300.27564 * 16 14 12 19 19 H 1.48493 * 109.46907 * 60.27455 * 16 14 12 20 20 C 1.53776 * 113.61343 * 205.00231 * 6 5 3 21 21 C 1.32995 * 120.00225 * 179.97438 * 2 1 3 22 22 C 1.51445 * 126.33750 * 179.68710 * 21 2 1 23 23 C 1.54283 * 106.84648 * 180.24014 * 22 21 2 24 24 C 1.54984 * 103.66184 * 23.48891 * 23 22 21 25 25 C 1.51839 * 126.33712 * 359.97438 * 21 2 1 26 26 H 1.08996 * 109.46782 * 90.00582 * 1 2 3 27 27 H 1.09000 * 109.46822 * 210.00030 * 1 2 3 28 28 H 1.08993 * 109.47044 * 330.00217 * 1 2 3 29 29 H 0.96995 * 119.99984 * 0.02562 * 5 3 2 30 30 H 1.09000 * 113.60962 * 25.40851 * 8 6 5 31 31 H 1.08997 * 113.66314 * 254.46394 * 8 6 5 32 32 H 0.97001 * 120.00384 * 74.14144 * 11 9 8 33 33 H 0.97005 * 119.99717 * 359.71965 * 15 14 12 34 34 H 1.09000 * 113.61546 * 105.47211 * 20 6 5 35 35 H 1.08997 * 113.69155 * 334.58104 * 20 6 5 36 36 H 1.08991 * 109.98670 * 299.72484 * 22 21 2 37 37 H 1.08992 * 109.98476 * 61.03315 * 22 21 2 38 38 H 1.08999 * 110.79748 * 264.86162 * 23 22 21 39 39 H 1.09002 * 110.55301 * 141.98992 * 23 22 21 40 40 H 1.09000 * 110.83553 * 204.49326 * 24 23 22 41 41 H 1.08996 * 111.00830 * 80.98647 * 24 23 22 42 42 H 1.08993 * 110.44584 * 274.92062 * 25 21 2 43 43 H 1.09001 * 110.44495 * 37.45692 * 25 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2425 1.2740 0.0000 4 8 3.4586 1.2740 -0.0005 5 7 1.5685 2.4412 -0.0005 6 6 2.3010 3.7099 -0.0011 7 1 3.3090 3.6181 0.4033 8 6 2.2439 4.4559 -1.3467 9 6 2.0908 5.7505 -0.5310 10 1 3.0407 6.2177 -0.2710 11 7 1.1302 6.6958 -1.1054 12 6 1.5760 7.8256 -1.7378 13 1 2.6358 8.0195 -1.8135 14 6 0.6659 8.7216 -2.2816 15 7 -0.6256 8.4855 -2.1889 16 14 1.2739 10.2666 -3.1376 17 1 0.1117 11.0543 -3.6215 18 1 2.0625 11.0845 -2.1815 19 1 2.1306 9.8893 -4.2903 20 6 1.5031 4.8821 0.5939 21 6 2.1721 -1.1517 0.0005 22 6 3.6773 -1.3189 -0.0061 23 6 3.9587 -2.8358 -0.0088 24 6 2.6649 -3.4471 -0.6041 25 6 1.5627 -2.5425 0.0017 26 1 -0.3633 -0.0001 -1.0276 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3633 0.8900 0.5138 29 1 0.5986 2.4411 -0.0005 30 1 1.3665 4.2104 -1.9450 31 1 3.1727 4.4050 -1.9149 32 1 0.1784 6.5215 -1.0377 33 1 -0.9413 7.6833 -1.7442 34 1 1.8347 5.1750 1.5901 35 1 0.4226 4.7547 0.5279 36 1 4.0994 -0.8580 -0.8990 37 1 4.1065 -0.8641 0.8866 38 1 4.1234 -3.2007 1.0050 39 1 4.8165 -3.0648 -0.6412 40 1 2.5396 -4.4803 -0.2801 41 1 2.6663 -3.3812 -1.6921 42 1 1.3301 -2.8554 1.0195 43 1 0.6671 -2.5663 -0.6191 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001021956640.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:09:00 Heat of formation + Delta-G solvation = -9.994103 kcal Electronic energy + Delta-G solvation = -21268.135560 eV Core-core repulsion = 18120.491025 eV Total energy + Delta-G solvation = -3147.644535 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.14016 -38.64689 -37.51099 -34.36708 -33.79673 -32.49687 -29.59470 -29.16441 -27.76839 -25.19206 -25.10795 -23.87931 -22.43761 -20.95896 -20.58978 -19.61083 -18.18467 -17.39646 -16.51755 -16.28093 -15.91218 -15.12186 -14.94588 -14.69436 -13.88182 -13.78262 -13.64270 -13.54809 -13.26445 -12.93238 -12.73676 -12.57237 -12.19271 -12.08810 -11.99132 -11.46796 -11.34603 -11.21957 -10.99294 -10.90103 -10.85114 -10.60512 -10.47261 -10.27347 -9.96111 -9.56689 -9.16278 -9.03293 -8.90801 -8.64474 -7.05866 -6.13268 -3.13166 1.28348 3.28509 3.34029 3.51632 3.54927 3.72272 4.19543 4.38998 4.66783 4.72239 4.74523 4.86423 4.95541 5.03341 5.15733 5.17627 5.28615 5.30337 5.40367 5.43664 5.49161 5.50193 5.54296 5.61037 5.74468 5.78518 5.81167 5.82872 5.96137 6.04636 6.07175 6.15702 6.23114 6.29720 6.41740 6.49431 6.56578 6.71868 7.01465 7.69120 7.79670 8.36028 8.72625 9.18957 10.05388 10.20105 11.34928 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.040634 B = 0.002831 C = 0.002769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.912316 B = 9888.836987 C =10107.940055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.189 4.189 3 C 0.553 3.447 4 O -0.546 6.546 5 N -0.712 5.712 6 C 0.120 3.880 7 H 0.109 0.891 8 C -0.175 4.175 9 C 0.174 3.826 10 H 0.080 0.920 11 N -0.722 5.722 12 C -0.334 4.334 13 H 0.066 0.934 14 C -0.045 4.045 15 N -0.943 5.943 16 Si 1.080 2.920 17 H -0.285 1.285 18 H -0.295 1.295 19 H -0.295 1.295 20 C -0.160 4.160 21 C -0.040 4.040 22 C -0.090 4.090 23 C -0.129 4.129 24 C -0.124 4.124 25 C -0.099 4.099 26 H 0.071 0.929 27 H 0.068 0.932 28 H 0.065 0.935 29 H 0.398 0.602 30 H 0.077 0.923 31 H 0.059 0.941 32 H 0.368 0.632 33 H 0.254 0.746 34 H 0.067 0.933 35 H 0.079 0.921 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.066 0.934 39 H 0.068 0.932 40 H 0.070 0.930 41 H 0.070 0.930 42 H 0.085 0.915 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.431 -23.561 6.250 24.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.192 4.192 3 C 0.341 3.659 4 O -0.426 6.426 5 N -0.362 5.362 6 C 0.015 3.985 7 H 0.127 0.873 8 C -0.218 4.218 9 C 0.062 3.938 10 H 0.098 0.902 11 N -0.362 5.362 12 C -0.465 4.465 13 H 0.084 0.916 14 C -0.242 4.242 15 N -0.589 5.589 16 Si 0.911 3.089 17 H -0.210 1.210 18 H -0.222 1.222 19 H -0.222 1.222 20 C -0.200 4.200 21 C -0.042 4.042 22 C -0.127 4.127 23 C -0.167 4.167 24 C -0.161 4.161 25 C -0.136 4.136 26 H 0.089 0.911 27 H 0.087 0.913 28 H 0.084 0.916 29 H 0.234 0.766 30 H 0.096 0.904 31 H 0.078 0.922 32 H 0.201 0.799 33 H 0.065 0.935 34 H 0.086 0.914 35 H 0.098 0.902 36 H 0.104 0.896 37 H 0.102 0.898 38 H 0.085 0.915 39 H 0.087 0.913 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.103 0.897 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 4.031 -22.041 5.420 23.053 hybrid contribution -0.312 -1.470 0.791 1.698 sum 3.719 -23.511 6.211 24.600 Atomic orbital electron populations 1.20712 0.90839 1.02765 1.02468 1.20827 0.96023 0.92097 1.10218 1.18293 0.87277 0.84026 0.76258 1.90747 1.13564 1.87718 1.50527 1.45976 1.10089 1.05617 1.74488 1.22474 0.96808 0.80461 0.98773 0.87261 1.24342 1.01762 0.99174 0.96498 1.21293 0.93922 0.87681 0.90950 0.90201 1.42362 1.03727 1.23378 1.66715 1.20110 0.93918 0.99922 1.32600 0.91583 1.25807 0.94311 1.03111 1.01013 1.70899 1.13153 1.28621 1.46196 0.83237 0.74725 0.75216 0.75735 1.21026 1.22191 1.22215 1.23847 1.00165 0.95962 0.99980 1.22693 0.96498 0.93477 0.91541 1.21252 0.92175 0.95318 1.03927 1.22472 0.97728 0.95441 1.01048 1.22525 0.94561 0.98561 1.00503 1.21566 0.98603 0.91635 1.01767 0.91074 0.91298 0.91648 0.76637 0.90423 0.92184 0.79857 0.93453 0.91425 0.90202 0.89625 0.89811 0.91480 0.91305 0.91143 0.91130 0.89669 0.90492 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.94 9.16 36.01 0.33 -0.61 16 2 C -0.19 -2.16 6.00 -102.84 -0.62 -2.78 16 3 C 0.55 8.08 7.75 -12.66 -0.10 7.98 16 4 O -0.55 -9.58 13.71 5.27 0.07 -9.51 16 5 N -0.71 -9.81 5.30 -54.11 -0.29 -10.10 16 6 C 0.12 1.88 4.24 -67.03 -0.28 1.59 16 7 H 0.11 1.79 7.47 -51.93 -0.39 1.40 16 8 C -0.18 -3.20 7.69 -25.82 -0.20 -3.40 16 9 C 0.17 3.49 4.47 -67.12 -0.30 3.19 16 10 H 0.08 1.62 8.11 -51.93 -0.42 1.20 16 11 N -0.72 -18.06 5.41 -52.64 -0.28 -18.34 16 12 C -0.33 -9.44 9.97 -15.06 -0.15 -9.60 16 13 H 0.07 1.84 7.83 -52.49 -0.41 1.42 16 14 C -0.05 -1.31 5.50 -17.43 -0.10 -1.41 16 15 N -0.94 -29.13 13.70 55.49 0.76 -28.37 16 16 Si 1.08 25.99 29.92 -169.99 -5.09 20.90 16 17 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 18 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 19 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 20 C -0.16 -2.58 7.58 -25.92 -0.20 -2.78 16 21 C -0.04 -0.42 6.12 -100.24 -0.61 -1.04 16 22 C -0.09 -0.99 4.81 -26.85 -0.13 -1.11 16 23 C -0.13 -1.03 6.88 -25.01 -0.17 -1.20 16 24 C -0.12 -0.86 6.95 -24.67 -0.17 -1.03 16 25 C -0.10 -0.74 5.66 -26.31 -0.15 -0.89 16 26 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.07 0.48 7.22 -51.93 -0.37 0.10 16 28 H 0.06 0.52 6.70 -51.93 -0.35 0.17 16 29 H 0.40 4.65 6.83 -40.82 -0.28 4.37 16 30 H 0.08 1.48 8.14 -51.93 -0.42 1.06 16 31 H 0.06 1.12 8.14 -51.93 -0.42 0.69 16 32 H 0.37 9.38 6.74 -40.82 -0.28 9.10 16 33 H 0.25 7.69 6.77 -40.82 -0.28 7.41 16 34 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.08 1.26 8.09 -51.93 -0.42 0.84 16 36 H 0.09 1.09 7.67 -51.93 -0.40 0.69 16 37 H 0.08 1.03 7.68 -51.93 -0.40 0.63 16 38 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 39 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.07 0.39 8.14 -51.93 -0.42 -0.04 16 41 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.09 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.08 0.51 7.68 -51.93 -0.40 0.11 16 LS Contribution 344.19 15.07 5.19 5.19 Total: -1.00 -32.88 344.19 -9.47 -42.35 By element: Atomic # 1 Polarization: 17.96 SS G_CDS: -6.99 Total: 10.97 kcal Atomic # 6 Polarization: -10.24 SS G_CDS: -2.85 Total: -13.08 kcal Atomic # 7 Polarization: -57.01 SS G_CDS: 0.19 Total: -56.82 kcal Atomic # 8 Polarization: -9.58 SS G_CDS: 0.07 Total: -9.51 kcal Atomic # 14 Polarization: 25.99 SS G_CDS: -5.09 Total: 20.90 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -32.88 -9.47 -42.35 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021956640.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.357 kcal (2) G-P(sol) polarization free energy of solvation -32.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.351 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.994 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds