Wall clock time and date at job start Tue Mar 31 2020 00:08:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.47102 * 119.99710 * 2 1 4 4 O 1.21609 * 119.99833 * 180.02562 * 3 2 1 5 5 N 1.34783 * 119.99792 * 359.97438 * 3 2 1 6 6 C 1.46503 * 119.99597 * 180.02562 * 5 3 2 7 7 H 1.08999 * 112.90897 * 336.25374 * 6 5 3 8 8 C 1.53959 * 113.66510 * 107.44407 * 6 5 3 9 9 C 1.53781 * 87.01918 * 139.93252 * 8 6 5 10 10 H 1.09001 * 113.61536 * 89.22969 * 9 8 6 11 11 N 1.46498 * 113.61116 * 220.04907 * 9 8 6 12 12 C 1.36936 * 119.99972 * 254.13327 * 11 9 8 13 13 H 1.08002 * 119.99631 * 0.02562 * 12 11 9 14 14 C 1.38806 * 120.00202 * 180.02562 * 12 11 9 15 15 N 1.31624 * 120.00103 * 0.02562 * 14 12 11 16 16 Si 1.86803 * 120.00201 * 179.72570 * 14 12 11 17 17 H 1.48494 * 109.47228 * 180.27680 * 16 14 12 18 18 H 1.48500 * 109.47000 * 300.27564 * 16 14 12 19 19 H 1.48493 * 109.46907 * 60.27455 * 16 14 12 20 20 C 1.53776 * 113.61343 * 205.00231 * 6 5 3 21 21 C 1.32995 * 120.00225 * 179.97438 * 2 1 3 22 22 C 1.51445 * 126.33750 * 179.68710 * 21 2 1 23 23 C 1.54283 * 106.84648 * 180.24014 * 22 21 2 24 24 C 1.54984 * 103.66184 * 23.48891 * 23 22 21 25 25 C 1.51839 * 126.33712 * 359.97438 * 21 2 1 26 26 H 1.08996 * 109.46782 * 90.00582 * 1 2 3 27 27 H 1.09000 * 109.46822 * 210.00030 * 1 2 3 28 28 H 1.08993 * 109.47044 * 330.00217 * 1 2 3 29 29 H 0.96995 * 119.99984 * 0.02562 * 5 3 2 30 30 H 1.09000 * 113.60962 * 25.40851 * 8 6 5 31 31 H 1.08997 * 113.66314 * 254.46394 * 8 6 5 32 32 H 0.97001 * 120.00384 * 74.14144 * 11 9 8 33 33 H 0.97005 * 119.99717 * 359.71965 * 15 14 12 34 34 H 1.09000 * 113.61546 * 105.47211 * 20 6 5 35 35 H 1.08997 * 113.69155 * 334.58104 * 20 6 5 36 36 H 1.08991 * 109.98670 * 299.72484 * 22 21 2 37 37 H 1.08992 * 109.98476 * 61.03315 * 22 21 2 38 38 H 1.08999 * 110.79748 * 264.86162 * 23 22 21 39 39 H 1.09002 * 110.55301 * 141.98992 * 23 22 21 40 40 H 1.09000 * 110.83553 * 204.49326 * 24 23 22 41 41 H 1.08996 * 111.00830 * 80.98647 * 24 23 22 42 42 H 1.08993 * 110.44584 * 274.92062 * 25 21 2 43 43 H 1.09001 * 110.44495 * 37.45692 * 25 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2425 1.2740 0.0000 4 8 3.4586 1.2740 -0.0005 5 7 1.5685 2.4412 -0.0005 6 6 2.3010 3.7099 -0.0011 7 1 3.3090 3.6181 0.4033 8 6 2.2439 4.4559 -1.3467 9 6 2.0908 5.7505 -0.5310 10 1 3.0407 6.2177 -0.2710 11 7 1.1302 6.6958 -1.1054 12 6 1.5760 7.8256 -1.7378 13 1 2.6358 8.0195 -1.8135 14 6 0.6659 8.7216 -2.2816 15 7 -0.6256 8.4855 -2.1889 16 14 1.2739 10.2666 -3.1376 17 1 0.1117 11.0543 -3.6215 18 1 2.0625 11.0845 -2.1815 19 1 2.1306 9.8893 -4.2903 20 6 1.5031 4.8821 0.5939 21 6 2.1721 -1.1517 0.0005 22 6 3.6773 -1.3189 -0.0061 23 6 3.9587 -2.8358 -0.0088 24 6 2.6649 -3.4471 -0.6041 25 6 1.5627 -2.5425 0.0017 26 1 -0.3633 -0.0001 -1.0276 27 1 -0.3633 -0.8900 0.5138 28 1 -0.3633 0.8900 0.5138 29 1 0.5986 2.4411 -0.0005 30 1 1.3665 4.2104 -1.9450 31 1 3.1727 4.4050 -1.9149 32 1 0.1784 6.5215 -1.0377 33 1 -0.9413 7.6833 -1.7442 34 1 1.8347 5.1750 1.5901 35 1 0.4226 4.7547 0.5279 36 1 4.0994 -0.8580 -0.8990 37 1 4.1065 -0.8641 0.8866 38 1 4.1234 -3.2007 1.0050 39 1 4.8165 -3.0648 -0.6412 40 1 2.5396 -4.4803 -0.2801 41 1 2.6663 -3.3812 -1.6921 42 1 1.3301 -2.8554 1.0195 43 1 0.6671 -2.5663 -0.6191 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001021956640.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:08:59 Heat of formation + Delta-G solvation = -30.480364 kcal Electronic energy + Delta-G solvation = -21269.023911 eV Core-core repulsion = 18120.491025 eV Total energy + Delta-G solvation = -3148.532886 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.30859 -39.84139 -38.56334 -36.12431 -34.94325 -33.75322 -31.51826 -29.86605 -28.46140 -26.66914 -26.43934 -25.48689 -23.86223 -21.75729 -21.62957 -21.02206 -19.56623 -19.11986 -17.64252 -17.40815 -16.80434 -16.59795 -16.17398 -15.84540 -15.64291 -15.39654 -14.88433 -14.41339 -14.24765 -14.13015 -13.63725 -13.44449 -13.39150 -13.27126 -12.89865 -12.81515 -12.67594 -12.31932 -12.16078 -12.11447 -11.94875 -11.88449 -11.87251 -11.82838 -11.49976 -11.21396 -10.89800 -10.68624 -10.12926 -9.68473 -9.11870 -8.41161 -5.35094 0.36712 1.58228 1.67773 1.84284 2.18092 2.24081 2.70935 3.35658 3.42953 3.57389 3.71594 3.73926 3.80892 3.89654 4.06827 4.12140 4.16891 4.18671 4.29922 4.48080 4.60905 4.67919 4.74281 4.74980 4.78009 4.81204 4.87959 4.92503 5.02316 5.02893 5.05036 5.11116 5.18103 5.19874 5.29106 5.38084 5.49184 5.54251 5.60258 5.68078 6.48611 6.58332 7.07242 7.23224 7.97598 8.08775 9.10839 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.040634 B = 0.002831 C = 0.002769 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 688.912316 B = 9888.836987 C =10107.940055 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.205 4.205 3 C 0.545 3.455 4 O -0.583 6.583 5 N -0.704 5.704 6 C 0.138 3.862 7 H 0.105 0.895 8 C -0.170 4.170 9 C 0.155 3.845 10 H 0.075 0.925 11 N -0.736 5.736 12 C -0.336 4.336 13 H 0.066 0.934 14 C -0.104 4.104 15 N -0.974 5.974 16 Si 1.127 2.873 17 H -0.292 1.292 18 H -0.277 1.277 19 H -0.280 1.280 20 C -0.139 4.139 21 C -0.039 4.039 22 C -0.095 4.095 23 C -0.125 4.125 24 C -0.121 4.121 25 C -0.094 4.094 26 H 0.076 0.924 27 H 0.089 0.911 28 H 0.069 0.931 29 H 0.411 0.589 30 H 0.069 0.931 31 H 0.051 0.949 32 H 0.363 0.637 33 H 0.245 0.755 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.060 0.940 37 H 0.063 0.937 38 H 0.077 0.923 39 H 0.072 0.928 40 H 0.093 0.907 41 H 0.068 0.932 42 H 0.103 0.897 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.051 -25.433 6.829 26.510 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.208 4.208 3 C 0.336 3.664 4 O -0.465 6.465 5 N -0.355 5.355 6 C 0.032 3.968 7 H 0.123 0.877 8 C -0.212 4.212 9 C 0.045 3.955 10 H 0.093 0.907 11 N -0.375 5.375 12 C -0.468 4.468 13 H 0.084 0.916 14 C -0.295 4.295 15 N -0.622 5.622 16 Si 0.952 3.048 17 H -0.218 1.218 18 H -0.203 1.203 19 H -0.206 1.206 20 C -0.178 4.178 21 C -0.041 4.041 22 C -0.132 4.132 23 C -0.163 4.163 24 C -0.158 4.158 25 C -0.131 4.131 26 H 0.094 0.906 27 H 0.108 0.892 28 H 0.088 0.912 29 H 0.248 0.752 30 H 0.088 0.912 31 H 0.070 0.930 32 H 0.195 0.805 33 H 0.056 0.944 34 H 0.102 0.898 35 H 0.107 0.893 36 H 0.078 0.922 37 H 0.082 0.918 38 H 0.096 0.904 39 H 0.090 0.910 40 H 0.111 0.889 41 H 0.086 0.914 42 H 0.121 0.879 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges 3.664 -23.964 6.026 24.980 hybrid contribution -0.081 -0.970 0.636 1.162 sum 3.583 -24.934 6.662 26.056 Atomic orbital electron populations 1.20750 0.88412 1.04029 1.03171 1.20903 0.97576 0.90590 1.11745 1.18920 0.87083 0.85147 0.75294 1.90731 1.15288 1.88293 1.52233 1.45852 1.10661 1.04797 1.74209 1.22110 0.96849 0.81298 0.96536 0.87730 1.24184 1.00925 0.98676 0.97414 1.21588 0.93333 0.87574 0.93010 0.90661 1.42498 1.04208 1.23612 1.67219 1.20443 0.93949 1.00655 1.31709 0.91631 1.27192 0.94029 1.06153 1.02095 1.71000 1.14284 1.28880 1.48065 0.82637 0.74405 0.72217 0.75591 1.21785 1.20284 1.20609 1.23649 1.00543 0.94350 0.99294 1.23069 0.96325 0.94991 0.89670 1.21252 0.92798 0.97388 1.01727 1.22462 0.98754 0.93046 1.02011 1.22547 0.93334 0.99574 1.00331 1.21654 0.99056 0.89244 1.03122 0.90566 0.89234 0.91233 0.75183 0.91247 0.93033 0.80462 0.94446 0.89799 0.89345 0.92184 0.91830 0.90383 0.90972 0.88866 0.91365 0.87936 0.89001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.55 9.16 71.24 0.65 -0.90 16 2 C -0.21 -4.46 6.00 -18.70 -0.11 -4.57 16 3 C 0.54 15.80 7.75 86.57 0.67 16.47 16 4 O -0.58 -20.96 13.71 -4.06 -0.06 -21.02 16 5 N -0.70 -18.84 5.30 -443.35 -2.35 -21.19 16 6 C 0.14 4.25 4.24 45.58 0.19 4.44 16 7 H 0.10 3.41 7.47 -2.39 -0.02 3.39 16 8 C -0.17 -6.23 7.69 31.18 0.24 -5.99 16 9 C 0.16 6.23 4.47 45.52 0.20 6.43 16 10 H 0.08 3.07 8.11 -2.39 -0.02 3.05 16 11 N -0.74 -37.11 5.41 -320.45 -1.73 -38.84 16 12 C -0.34 -19.09 9.97 84.03 0.84 -18.25 16 13 H 0.07 3.65 7.83 -2.91 -0.02 3.63 16 14 C -0.10 -6.04 5.50 84.86 0.47 -5.58 16 15 N -0.97 -60.95 13.70 21.65 0.30 -60.65 16 16 Si 1.13 52.30 29.92 68.60 2.05 54.36 16 17 H -0.29 -13.79 7.11 99.48 0.71 -13.08 16 18 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 19 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 20 C -0.14 -4.33 7.58 31.12 0.24 -4.09 16 21 C -0.04 -0.76 6.12 -17.01 -0.10 -0.87 16 22 C -0.09 -2.08 4.81 30.52 0.15 -1.93 16 23 C -0.13 -1.81 6.88 31.71 0.22 -1.59 16 24 C -0.12 -1.33 6.95 31.93 0.22 -1.11 16 25 C -0.09 -1.12 5.66 30.87 0.17 -0.94 16 26 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 27 H 0.09 0.93 7.22 -2.39 -0.02 0.92 16 28 H 0.07 0.94 6.70 -2.39 -0.02 0.92 16 29 H 0.41 8.97 6.83 -92.71 -0.63 8.34 16 30 H 0.07 2.66 8.14 -2.39 -0.02 2.64 16 31 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 32 H 0.36 18.78 6.74 -92.71 -0.62 18.16 16 33 H 0.25 15.15 6.77 -92.70 -0.63 14.52 16 34 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 35 H 0.09 2.64 8.09 -2.39 -0.02 2.62 16 36 H 0.06 1.61 7.67 -2.39 -0.02 1.59 16 37 H 0.06 1.63 7.68 -2.39 -0.02 1.61 16 38 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 39 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 41 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 42 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 43 H 0.09 0.88 7.68 -2.39 -0.02 0.86 16 Total: -1.00 -71.95 344.19 2.15 -69.80 By element: Atomic # 1 Polarization: 36.14 SS G_CDS: -0.11 Total: 36.03 kcal Atomic # 6 Polarization: -22.53 SS G_CDS: 4.05 Total: -18.48 kcal Atomic # 7 Polarization: -116.90 SS G_CDS: -3.79 Total: -120.69 kcal Atomic # 8 Polarization: -20.96 SS G_CDS: -0.06 Total: -21.02 kcal Atomic # 14 Polarization: 52.30 SS G_CDS: 2.05 Total: 54.36 kcal Total: -71.95 2.15 -69.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001021956640.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.324 kcal (2) G-P(sol) polarization free energy of solvation -71.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.627 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds