Wall clock time and date at job start Tue Mar 31 2020 00:10:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47089 * 2 1 4 4 C 1.53004 * 115.55988 * 34.31108 * 3 2 1 5 5 C 1.52999 * 117.50120 * 248.62271 * 3 2 1 6 6 C 1.52998 * 117.50025 * 179.97438 * 3 2 1 7 7 H 1.09002 * 117.52060 * 214.97338 * 6 3 2 8 8 C 1.50700 * 117.49770 * 0.02562 * 6 3 2 9 9 O 1.21280 * 120.00221 * 0.02562 * 8 6 3 10 10 N 1.34780 * 119.99700 * 179.73378 * 8 6 3 11 11 C 1.46509 * 119.99618 * 180.27264 * 10 8 6 12 12 H 1.08997 * 115.51286 * 350.42336 * 11 10 8 13 13 C 1.52998 * 117.44374 * 205.00114 * 11 10 8 14 14 H 1.09003 * 119.53343 * 4.12309 * 13 11 10 15 15 C 1.54381 * 118.12212 * 159.21663 * 13 11 10 16 16 N 1.51831 * 102.86831 * 88.02243 * 15 13 11 17 17 C 1.36930 * 127.60920 * 140.54226 * 16 15 13 18 18 H 1.08003 * 119.99744 * 194.65091 * 17 16 15 19 19 C 1.38811 * 120.00371 * 14.65327 * 17 16 15 20 20 N 1.31614 * 119.99852 * 9.01874 * 19 17 16 21 21 Si 1.86805 * 120.00158 * 189.01426 * 19 17 16 22 22 H 1.48498 * 109.47053 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.46903 * 120.00081 * 21 19 17 24 24 H 1.48500 * 109.47311 * 240.00217 * 21 19 17 25 25 C 1.48148 * 104.54568 * 320.27357 * 16 15 13 26 26 C 1.53000 * 117.43725 * 135.76194 * 11 10 8 27 27 H 1.09007 * 119.54321 * 355.88793 * 26 11 10 28 28 H 1.08997 * 109.46893 * 299.99745 * 1 2 3 29 29 H 1.08997 * 109.47186 * 60.00300 * 1 2 3 30 30 H 1.09006 * 109.46763 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47326 * 240.00077 * 2 1 3 32 32 H 1.09001 * 109.46907 * 120.00107 * 2 1 3 33 33 H 1.09005 * 109.47316 * 205.68499 * 4 3 2 34 34 H 1.08994 * 109.47265 * 325.68855 * 4 3 2 35 35 H 1.09003 * 109.46848 * 85.68871 * 4 3 2 36 36 H 1.09001 * 117.49984 * 145.02301 * 5 3 2 37 37 H 1.09000 * 117.49693 * 359.97438 * 5 3 2 38 38 H 0.96996 * 120.00480 * 0.28075 * 10 8 6 39 39 H 1.09002 * 110.40776 * 205.97669 * 15 13 11 40 40 H 1.09005 * 110.40887 * 328.40744 * 15 13 11 41 41 H 0.97002 * 119.99719 * 180.02562 * 20 19 17 42 42 H 1.09001 * 110.40197 * 281.06821 * 25 16 15 43 43 H 1.09002 * 110.40607 * 158.64817 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.1851 2.4449 0.7781 5 6 2.7419 1.9437 -1.2637 6 6 3.5550 1.6562 0.0006 7 1 3.9428 2.5110 0.5547 8 6 4.4307 0.4297 0.0006 9 8 3.9283 -0.6741 -0.0004 10 7 5.7722 0.5596 -0.0043 11 6 6.6235 -0.6328 -0.0104 12 1 6.1075 -1.5788 0.1530 13 6 8.0369 -0.4929 0.5583 14 1 8.3446 0.4517 1.0069 15 6 8.7675 -1.7739 1.0153 16 7 9.4496 -2.2461 -0.2563 17 6 10.7021 -2.7850 -0.3821 18 1 11.1614 -2.8620 -1.3565 19 6 11.3814 -3.2325 0.7427 20 7 10.7605 -3.3047 1.9010 21 14 13.1766 -3.7322 0.6125 22 1 13.6382 -3.5592 -0.7883 23 1 13.9944 -2.8790 1.5116 24 1 13.3245 -5.1552 1.0107 25 6 8.4548 -1.9991 -1.3259 26 6 7.8212 -0.6390 -0.9624 27 1 7.9683 0.1967 -1.6466 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.3350 3.4444 0.3697 34 1 0.1339 2.1707 0.6908 35 1 1.4776 2.4338 1.8281 36 1 2.5947 2.9876 -1.5408 37 1 2.8407 1.2456 -2.0950 38 1 6.1740 1.4424 -0.0037 39 1 9.5069 -1.5373 1.7804 40 1 8.0523 -2.5061 1.3902 41 1 11.2354 -3.6170 2.6871 42 1 7.6971 -2.7828 -1.3286 43 1 8.9469 -1.9419 -2.2968 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026130767.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:10:45 Heat of formation + Delta-G solvation = 44.168329 kcal Electronic energy + Delta-G solvation = -21486.639963 eV Core-core repulsion = 18341.344088 eV Total energy + Delta-G solvation = -3145.295876 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.34782 -38.74810 -37.18791 -34.32857 -32.76073 -32.12704 -30.16115 -28.49326 -27.13352 -25.86752 -24.25415 -23.90149 -21.61191 -20.48721 -20.10876 -19.20034 -18.86267 -17.04259 -16.84876 -16.17645 -15.19373 -14.91873 -14.67483 -14.35450 -14.25811 -13.70756 -13.38535 -13.30623 -13.15542 -12.74063 -12.37132 -12.16641 -11.99964 -11.97837 -11.50550 -11.45637 -11.28260 -11.05800 -10.96497 -10.84163 -10.43102 -10.27603 -10.16084 -10.10929 -9.94467 -9.68423 -9.45211 -9.16362 -8.74257 -8.30574 -6.87134 -5.78209 -3.11269 2.51266 3.10207 3.38746 3.44587 3.47101 3.60709 4.31687 4.41176 4.46975 4.51985 4.63408 4.84034 4.98360 5.17193 5.22121 5.32004 5.36176 5.39811 5.43468 5.47619 5.54127 5.56629 5.60225 5.74533 5.79687 5.80940 5.90495 5.95518 6.08348 6.16389 6.22975 6.25237 6.49048 6.54320 6.69800 6.83477 6.90262 7.31211 7.52170 7.63509 7.70819 8.15314 8.35044 9.07162 9.73767 10.50571 11.36834 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.046310 B = 0.002985 C = 0.002959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.473301 B = 9376.527261 C = 9461.472137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.077 4.077 3 C -0.088 4.088 4 C -0.123 4.123 5 C -0.147 4.147 6 C -0.189 4.189 7 H 0.121 0.879 8 C 0.544 3.456 9 O -0.534 6.534 10 N -0.695 5.695 11 C 0.096 3.904 12 H 0.131 0.869 13 C -0.178 4.178 14 H 0.101 0.899 15 C 0.185 3.815 16 N -0.599 5.599 17 C -0.224 4.224 18 H 0.077 0.923 19 C -0.008 4.008 20 N -0.917 5.917 21 Si 0.912 3.088 22 H -0.279 1.279 23 H -0.290 1.290 24 H -0.290 1.290 25 C 0.159 3.841 26 C -0.183 4.183 27 H 0.102 0.898 28 H 0.055 0.945 29 H 0.050 0.950 30 H 0.052 0.948 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.056 0.944 34 H 0.073 0.927 35 H 0.061 0.939 36 H 0.102 0.898 37 H 0.099 0.901 38 H 0.398 0.602 39 H 0.092 0.908 40 H 0.032 0.968 41 H 0.253 0.747 42 H 0.026 0.974 43 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.567 13.462 -3.484 22.404 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.115 4.115 3 C -0.089 4.089 4 C -0.180 4.180 5 C -0.185 4.185 6 C -0.210 4.210 7 H 0.139 0.861 8 C 0.330 3.670 9 O -0.410 6.410 10 N -0.343 5.343 11 C -0.010 4.010 12 H 0.149 0.851 13 C -0.200 4.200 14 H 0.119 0.881 15 C 0.061 3.939 16 N -0.323 5.323 17 C -0.352 4.352 18 H 0.095 0.905 19 C -0.205 4.205 20 N -0.563 5.563 21 Si 0.743 3.257 22 H -0.204 1.204 23 H -0.217 1.217 24 H -0.217 1.217 25 C 0.032 3.968 26 C -0.204 4.204 27 H 0.120 0.880 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.091 0.909 32 H 0.094 0.906 33 H 0.075 0.925 34 H 0.091 0.909 35 H 0.080 0.920 36 H 0.120 0.880 37 H 0.118 0.882 38 H 0.232 0.768 39 H 0.110 0.890 40 H 0.050 0.950 41 H 0.064 0.936 42 H 0.043 0.957 43 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -17.702 12.527 -3.365 21.946 hybrid contribution 1.396 0.440 0.009 1.464 sum -16.305 12.968 -3.355 21.102 Atomic orbital electron populations 1.21936 0.96590 1.01379 1.01294 1.21102 0.94002 0.92298 1.04071 1.21589 0.90314 0.97728 0.99254 1.21523 0.99942 0.96947 0.99615 1.23214 1.01707 1.02415 0.91144 1.22377 0.94130 0.98999 1.05474 0.86144 1.19620 0.82001 0.89695 0.75663 1.90701 1.73556 1.27349 1.49417 1.45374 1.05571 1.09074 1.74283 1.21867 0.85902 0.89592 1.03623 0.85146 1.24585 0.95613 1.02772 0.96989 0.88099 1.21702 0.93954 0.88059 0.90216 1.46080 1.12685 1.72086 1.01499 1.19063 0.89357 1.32719 0.94048 0.90481 1.24871 0.98915 1.00520 0.96155 1.69893 1.35054 1.51847 0.99539 0.86045 0.84502 0.77829 0.77370 1.20420 1.21679 1.21712 1.21055 0.91564 0.91207 0.92995 1.24378 1.00802 1.01485 0.93769 0.87988 0.92627 0.93051 0.92848 0.90886 0.90633 0.92487 0.90862 0.92031 0.87999 0.88243 0.76818 0.88962 0.95014 0.93634 0.95653 0.93030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 8.92 37.16 0.33 -1.04 16 2 C -0.08 -0.88 4.36 -26.73 -0.12 -0.99 16 3 C -0.09 -0.85 2.47 -154.51 -0.38 -1.23 16 4 C -0.12 -0.91 9.49 37.16 0.35 -0.56 16 5 C -0.15 -1.31 9.53 -26.71 -0.25 -1.56 16 6 C -0.19 -1.93 5.91 -91.75 -0.54 -2.47 16 7 H 0.12 0.99 8.14 -51.93 -0.42 0.57 16 8 C 0.54 7.62 7.59 -10.98 -0.08 7.54 16 9 O -0.53 -9.29 12.67 5.56 0.07 -9.22 16 10 N -0.70 -9.48 5.56 -53.80 -0.30 -9.78 16 11 C 0.10 1.64 5.97 -67.93 -0.41 1.24 16 12 H 0.13 2.54 7.40 -51.93 -0.38 2.15 16 13 C -0.18 -3.38 6.96 -89.22 -0.62 -4.01 16 14 H 0.10 1.75 8.14 -51.93 -0.42 1.33 16 15 C 0.19 4.48 5.92 -0.29 0.00 4.47 16 16 N -0.60 -15.51 3.45 -165.71 -0.57 -16.08 16 17 C -0.22 -6.28 10.36 -15.06 -0.16 -6.43 16 18 H 0.08 2.09 7.84 -52.48 -0.41 1.68 16 19 C -0.01 -0.22 5.42 -17.43 -0.09 -0.32 16 20 N -0.92 -26.97 10.82 55.49 0.60 -26.37 16 21 Si 0.91 22.04 29.56 -169.99 -5.03 17.01 16 22 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 23 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 24 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 25 C 0.16 3.40 7.05 -2.41 -0.02 3.39 16 26 C -0.18 -3.30 7.06 -89.22 -0.63 -3.93 16 27 H 0.10 1.65 8.14 -51.93 -0.42 1.23 16 28 H 0.05 0.43 6.45 -51.93 -0.33 0.10 16 29 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 30 H 0.05 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.07 0.96 7.01 -51.93 -0.36 0.59 16 32 H 0.08 1.02 7.26 -51.93 -0.38 0.64 16 33 H 0.06 0.35 7.90 -51.93 -0.41 -0.06 16 34 H 0.07 0.49 5.58 -51.93 -0.29 0.20 16 35 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 36 H 0.10 0.69 8.05 -51.93 -0.42 0.27 16 37 H 0.10 0.98 8.05 -51.93 -0.42 0.56 16 38 H 0.40 4.32 8.83 -40.82 -0.36 3.96 16 39 H 0.09 2.46 6.56 -51.93 -0.34 2.12 16 40 H 0.03 0.81 8.14 -51.93 -0.42 0.38 16 41 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 42 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 43 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 342.93 15.07 5.17 5.17 Total: -1.00 -31.44 342.93 -9.73 -41.17 By element: Atomic # 1 Polarization: 11.06 SS G_CDS: -7.05 Total: 4.01 kcal Atomic # 6 Polarization: -3.29 SS G_CDS: -2.62 Total: -5.91 kcal Atomic # 7 Polarization: -51.95 SS G_CDS: -0.27 Total: -52.23 kcal Atomic # 8 Polarization: -9.29 SS G_CDS: 0.07 Total: -9.22 kcal Atomic # 14 Polarization: 22.04 SS G_CDS: -5.03 Total: 17.01 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -31.44 -9.73 -41.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026130767.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.339 kcal (2) G-P(sol) polarization free energy of solvation -31.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.894 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.170 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.168 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds