Wall clock time and date at job start Tue Mar 31 2020 00:10:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52997 * 109.47089 * 2 1 4 4 C 1.53004 * 115.55988 * 34.31108 * 3 2 1 5 5 C 1.52999 * 117.50120 * 248.62271 * 3 2 1 6 6 C 1.52998 * 117.50025 * 179.97438 * 3 2 1 7 7 H 1.09002 * 117.52060 * 214.97338 * 6 3 2 8 8 C 1.50700 * 117.49770 * 0.02562 * 6 3 2 9 9 O 1.21280 * 120.00221 * 0.02562 * 8 6 3 10 10 N 1.34780 * 119.99700 * 179.73378 * 8 6 3 11 11 C 1.46509 * 119.99618 * 180.27264 * 10 8 6 12 12 H 1.08997 * 115.51286 * 350.42336 * 11 10 8 13 13 C 1.52998 * 117.44374 * 205.00114 * 11 10 8 14 14 H 1.09003 * 119.53343 * 4.12309 * 13 11 10 15 15 C 1.54381 * 118.12212 * 159.21663 * 13 11 10 16 16 N 1.51831 * 102.86831 * 88.02243 * 15 13 11 17 17 C 1.36930 * 127.60920 * 140.54226 * 16 15 13 18 18 H 1.08003 * 119.99744 * 194.65091 * 17 16 15 19 19 C 1.38811 * 120.00371 * 14.65327 * 17 16 15 20 20 N 1.31614 * 119.99852 * 9.01874 * 19 17 16 21 21 Si 1.86805 * 120.00158 * 189.01426 * 19 17 16 22 22 H 1.48498 * 109.47053 * 0.02562 * 21 19 17 23 23 H 1.48500 * 109.46903 * 120.00081 * 21 19 17 24 24 H 1.48500 * 109.47311 * 240.00217 * 21 19 17 25 25 C 1.48148 * 104.54568 * 320.27357 * 16 15 13 26 26 C 1.53000 * 117.43725 * 135.76194 * 11 10 8 27 27 H 1.09007 * 119.54321 * 355.88793 * 26 11 10 28 28 H 1.08997 * 109.46893 * 299.99745 * 1 2 3 29 29 H 1.08997 * 109.47186 * 60.00300 * 1 2 3 30 30 H 1.09006 * 109.46763 * 179.97438 * 1 2 3 31 31 H 1.09001 * 109.47326 * 240.00077 * 2 1 3 32 32 H 1.09001 * 109.46907 * 120.00107 * 2 1 3 33 33 H 1.09005 * 109.47316 * 205.68499 * 4 3 2 34 34 H 1.08994 * 109.47265 * 325.68855 * 4 3 2 35 35 H 1.09003 * 109.46848 * 85.68871 * 4 3 2 36 36 H 1.09001 * 117.49984 * 145.02301 * 5 3 2 37 37 H 1.09000 * 117.49693 * 359.97438 * 5 3 2 38 38 H 0.96996 * 120.00480 * 0.28075 * 10 8 6 39 39 H 1.09002 * 110.40776 * 205.97669 * 15 13 11 40 40 H 1.09005 * 110.40887 * 328.40744 * 15 13 11 41 41 H 0.97002 * 119.99719 * 180.02562 * 20 19 17 42 42 H 1.09001 * 110.40197 * 281.06821 * 25 16 15 43 43 H 1.09002 * 110.40607 * 158.64817 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.1851 2.4449 0.7781 5 6 2.7419 1.9437 -1.2637 6 6 3.5550 1.6562 0.0006 7 1 3.9428 2.5110 0.5547 8 6 4.4307 0.4297 0.0006 9 8 3.9283 -0.6741 -0.0004 10 7 5.7722 0.5596 -0.0043 11 6 6.6235 -0.6328 -0.0104 12 1 6.1075 -1.5788 0.1530 13 6 8.0369 -0.4929 0.5583 14 1 8.3446 0.4517 1.0069 15 6 8.7675 -1.7739 1.0153 16 7 9.4496 -2.2461 -0.2563 17 6 10.7021 -2.7850 -0.3821 18 1 11.1614 -2.8620 -1.3565 19 6 11.3814 -3.2325 0.7427 20 7 10.7605 -3.3047 1.9010 21 14 13.1766 -3.7322 0.6125 22 1 13.6382 -3.5592 -0.7883 23 1 13.9944 -2.8790 1.5116 24 1 13.3245 -5.1552 1.0107 25 6 8.4548 -1.9991 -1.3259 26 6 7.8212 -0.6390 -0.9624 27 1 7.9683 0.1967 -1.6466 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 1.3350 3.4444 0.3697 34 1 0.1339 2.1707 0.6908 35 1 1.4776 2.4338 1.8281 36 1 2.5947 2.9876 -1.5408 37 1 2.8407 1.2456 -2.0950 38 1 6.1740 1.4424 -0.0037 39 1 9.5069 -1.5373 1.7804 40 1 8.0523 -2.5061 1.3902 41 1 11.2354 -3.6170 2.6871 42 1 7.6971 -2.7828 -1.3286 43 1 8.9469 -1.9419 -2.2968 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026130767.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:10:44 Heat of formation + Delta-G solvation = 25.074271 kcal Electronic energy + Delta-G solvation = -21487.467944 eV Core-core repulsion = 18341.344088 eV Total energy + Delta-G solvation = -3146.123856 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.43138 -40.17799 -38.26746 -35.94935 -34.36029 -33.09288 -31.96817 -29.14331 -28.93270 -27.70159 -25.43283 -24.66402 -23.24628 -21.97476 -21.28967 -20.81572 -19.74264 -18.86057 -18.06311 -17.54528 -16.72617 -16.11954 -15.90153 -15.50371 -15.38807 -15.09252 -14.82681 -14.64416 -14.26562 -13.98956 -13.76242 -13.34774 -13.25238 -13.08400 -12.88643 -12.76214 -12.74466 -12.55528 -12.15986 -12.03968 -12.00652 -11.85013 -11.80418 -11.64394 -11.01582 -10.90060 -10.82990 -10.74686 -10.40243 -9.69349 -8.95223 -7.92224 -5.28078 1.44689 1.46444 1.47134 1.58303 1.95581 2.47853 2.73245 2.91326 3.28332 3.49093 3.61166 3.72633 3.80577 3.87746 3.92480 4.07898 4.12503 4.19338 4.35017 4.48420 4.49440 4.62279 4.73176 4.78925 4.84860 4.89622 4.93377 4.95891 4.99612 5.10482 5.16937 5.24977 5.26996 5.31679 5.38327 5.42929 5.44835 5.54713 5.62394 5.64953 6.10554 6.56135 6.93975 7.26817 7.63543 8.43486 9.22492 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.046310 B = 0.002985 C = 0.002959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 604.473301 B = 9376.527261 C = 9461.472137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.077 4.077 3 C -0.095 4.095 4 C -0.119 4.119 5 C -0.131 4.131 6 C -0.192 4.192 7 H 0.150 0.850 8 C 0.537 3.463 9 O -0.575 6.575 10 N -0.682 5.682 11 C 0.117 3.883 12 H 0.102 0.898 13 C -0.177 4.177 14 H 0.126 0.874 15 C 0.187 3.813 16 N -0.623 5.623 17 C -0.239 4.239 18 H 0.083 0.917 19 C -0.065 4.065 20 N -0.949 5.949 21 Si 0.982 3.018 22 H -0.264 1.264 23 H -0.289 1.289 24 H -0.293 1.293 25 C 0.151 3.849 26 C -0.166 4.166 27 H 0.135 0.865 28 H 0.069 0.931 29 H 0.063 0.937 30 H 0.047 0.953 31 H 0.046 0.954 32 H 0.045 0.955 33 H 0.077 0.923 34 H 0.079 0.921 35 H 0.060 0.940 36 H 0.134 0.866 37 H 0.085 0.915 38 H 0.417 0.583 39 H 0.062 0.938 40 H 0.003 0.997 41 H 0.250 0.750 42 H 0.015 0.985 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.273 16.508 -4.636 25.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.114 4.114 3 C -0.096 4.096 4 C -0.176 4.176 5 C -0.168 4.168 6 C -0.213 4.213 7 H 0.168 0.832 8 C 0.326 3.674 9 O -0.454 6.454 10 N -0.332 5.332 11 C 0.010 3.990 12 H 0.120 0.880 13 C -0.198 4.198 14 H 0.144 0.856 15 C 0.063 3.937 16 N -0.348 5.348 17 C -0.367 4.367 18 H 0.100 0.900 19 C -0.258 4.258 20 N -0.598 5.598 21 Si 0.810 3.190 22 H -0.188 1.188 23 H -0.216 1.216 24 H -0.220 1.220 25 C 0.025 3.975 26 C -0.187 4.187 27 H 0.153 0.847 28 H 0.088 0.912 29 H 0.082 0.918 30 H 0.066 0.934 31 H 0.065 0.935 32 H 0.063 0.937 33 H 0.096 0.904 34 H 0.098 0.902 35 H 0.079 0.921 36 H 0.152 0.848 37 H 0.104 0.896 38 H 0.254 0.746 39 H 0.080 0.920 40 H 0.021 0.979 41 H 0.059 0.941 42 H 0.033 0.967 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -18.426 15.620 -4.545 24.580 hybrid contribution 1.534 -0.600 0.342 1.682 sum -16.892 15.020 -4.203 22.991 Atomic orbital electron populations 1.21893 0.94608 1.01545 1.02566 1.20983 0.95759 0.93399 1.01294 1.21699 0.90226 0.97125 1.00549 1.21532 0.99704 0.97112 0.99223 1.23309 0.99743 1.03802 0.89986 1.22419 0.93695 0.97840 1.07341 0.83194 1.20412 0.82107 0.90546 0.74348 1.90705 1.74227 1.29429 1.51035 1.45207 1.05273 1.08667 1.74033 1.21365 0.85350 0.90189 1.02135 0.88004 1.24273 0.96815 1.01021 0.97706 0.85635 1.21435 0.92960 0.89842 0.89478 1.46403 1.12987 1.72346 1.03061 1.19460 0.90474 1.32423 0.94375 0.89957 1.25744 1.03157 1.01081 0.95865 1.70094 1.36564 1.53006 1.00095 0.84965 0.79271 0.76877 0.77900 1.18842 1.21590 1.22029 1.21187 0.90819 0.92874 0.92570 1.24282 1.00650 1.00283 0.93456 0.84715 0.91206 0.91779 0.93360 0.93547 0.93665 0.90442 0.90196 0.92133 0.84754 0.89647 0.74594 0.91979 0.97877 0.94125 0.96724 0.91824 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.48 8.92 71.98 0.64 -1.84 16 2 C -0.08 -1.74 4.36 30.59 0.13 -1.61 16 3 C -0.10 -1.64 2.47 -52.18 -0.13 -1.77 16 4 C -0.12 -1.36 9.49 71.98 0.68 -0.67 16 5 C -0.13 -1.92 9.53 30.61 0.29 -1.63 16 6 C -0.19 -3.42 5.91 -11.52 -0.07 -3.48 16 7 H 0.15 1.81 8.14 -2.39 -0.02 1.79 16 8 C 0.54 14.52 7.59 87.66 0.67 15.18 16 9 O -0.57 -20.56 12.67 -3.03 -0.04 -20.60 16 10 N -0.68 -17.32 5.56 -442.52 -2.46 -19.78 16 11 C 0.12 3.94 5.97 44.99 0.27 4.21 16 12 H 0.10 4.12 7.40 -2.39 -0.02 4.10 16 13 C -0.18 -6.63 6.96 -9.89 -0.07 -6.70 16 14 H 0.13 4.10 8.14 -2.39 -0.02 4.08 16 15 C 0.19 9.42 5.92 85.79 0.51 9.93 16 16 N -0.62 -32.94 3.45 -678.18 -2.34 -35.28 16 17 C -0.24 -13.58 10.36 84.03 0.87 -12.71 16 18 H 0.08 4.47 7.84 -2.91 -0.02 4.45 16 19 C -0.07 -3.74 5.42 84.86 0.46 -3.28 16 20 N -0.95 -57.82 10.82 21.65 0.23 -57.58 16 21 Si 0.98 45.89 29.56 68.60 2.03 47.91 16 22 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 23 H -0.29 -13.38 7.11 99.48 0.71 -12.67 16 24 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 25 C 0.15 6.50 7.05 86.53 0.61 7.11 16 26 C -0.17 -5.73 7.06 -9.89 -0.07 -5.80 16 27 H 0.14 3.86 8.14 -2.38 -0.02 3.84 16 28 H 0.07 0.96 6.45 -2.39 -0.02 0.95 16 29 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.05 0.83 8.14 -2.38 -0.02 0.81 16 31 H 0.05 1.27 7.01 -2.39 -0.02 1.25 16 32 H 0.04 1.28 7.26 -2.39 -0.02 1.26 16 33 H 0.08 0.59 7.90 -2.38 -0.02 0.57 16 34 H 0.08 0.81 5.58 -2.39 -0.01 0.80 16 35 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 36 H 0.13 1.14 8.05 -2.39 -0.02 1.12 16 37 H 0.08 1.52 8.05 -2.39 -0.02 1.50 16 38 H 0.42 7.61 8.83 -92.71 -0.82 6.79 16 39 H 0.06 3.47 6.56 -2.39 -0.02 3.45 16 40 H 0.00 0.17 8.14 -2.38 -0.02 0.15 16 41 H 0.25 14.67 8.31 -92.71 -0.77 13.90 16 42 H 0.01 0.67 8.14 -2.39 -0.02 0.65 16 43 H 0.06 2.55 8.14 -2.39 -0.02 2.53 16 Total: -1.00 -71.76 342.93 2.40 -69.36 By element: Atomic # 1 Polarization: 18.84 SS G_CDS: 0.18 Total: 19.02 kcal Atomic # 6 Polarization: -7.86 SS G_CDS: 4.80 Total: -3.06 kcal Atomic # 7 Polarization: -108.07 SS G_CDS: -4.57 Total: -112.64 kcal Atomic # 8 Polarization: -20.56 SS G_CDS: -0.04 Total: -20.60 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.91 kcal Total: -71.76 2.40 -69.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026130767.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.436 kcal (2) G-P(sol) polarization free energy of solvation -71.761 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.361 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.074 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds