Wall clock time and date at job start Tue Mar 31 2020 00:10:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.46940 * 2 1 4 4 C 1.53001 * 115.55202 * 34.27332 * 3 2 1 5 5 C 1.53002 * 117.49482 * 248.60573 * 3 2 1 6 6 C 1.52997 * 60.00157 * 252.50908 * 5 3 2 7 7 H 1.09003 * 117.49959 * 107.49044 * 6 5 3 8 8 C 1.50703 * 117.49992 * 252.51278 * 6 5 3 9 9 O 1.21283 * 120.00104 * 68.61777 * 8 6 5 10 10 N 1.34778 * 120.00206 * 248.62315 * 8 6 5 11 11 C 1.46495 * 120.00316 * 180.02562 * 10 8 6 12 12 H 1.09002 * 115.51600 * 350.41071 * 11 10 8 13 13 C 1.53007 * 117.44007 * 204.99996 * 11 10 8 14 14 H 1.08991 * 119.54012 * 5.70711 * 13 11 10 15 15 C 1.54390 * 118.11832 * 160.81050 * 13 11 10 16 16 N 1.48139 * 104.62098 * 87.18663 * 15 13 11 17 17 C 1.36935 * 127.83829 * 140.40878 * 16 15 13 18 18 H 1.08005 * 120.00314 * 195.57265 * 17 16 15 19 19 C 1.38816 * 120.00094 * 15.57530 * 17 16 15 20 20 N 1.31614 * 119.99638 * 9.09957 * 19 17 16 21 21 Si 1.86802 * 120.00114 * 189.09362 * 19 17 16 22 22 H 1.48500 * 109.46826 * 60.00240 * 21 19 17 23 23 H 1.48501 * 109.46639 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47281 * 300.00044 * 21 19 17 25 25 C 1.48147 * 104.32249 * 320.41280 * 16 15 13 26 26 C 1.52998 * 117.44282 * 135.75719 * 11 10 8 27 27 H 1.08992 * 119.54325 * 355.88338 * 26 11 10 28 28 H 1.08998 * 109.46834 * 60.00671 * 1 2 3 29 29 H 1.08999 * 109.46685 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47410 * 300.00265 * 1 2 3 31 31 H 1.08996 * 109.47410 * 239.99735 * 2 1 3 32 32 H 1.09008 * 109.47357 * 119.99237 * 2 1 3 33 33 H 1.09000 * 109.47094 * 85.58885 * 4 3 2 34 34 H 1.09007 * 109.47249 * 205.58560 * 4 3 2 35 35 H 1.08996 * 109.47346 * 325.58532 * 4 3 2 36 36 H 1.08996 * 117.50358 * 359.97438 * 5 3 2 37 37 H 1.09007 * 117.49814 * 144.99890 * 5 3 2 38 38 H 0.97001 * 119.99316 * 359.97438 * 10 8 6 39 39 H 1.09003 * 110.40169 * 205.97002 * 15 13 11 40 40 H 1.08995 * 110.40866 * 328.28049 * 15 13 11 41 41 H 0.97006 * 119.99793 * 180.02562 * 20 19 17 42 42 H 1.09004 * 110.40603 * 158.37342 * 25 16 15 43 43 H 1.08997 * 110.40488 * 280.79451 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.1845 2.4449 0.7773 5 6 2.7422 1.9434 -1.2637 6 6 3.5550 1.6562 0.0003 7 1 4.1884 0.7691 0.0006 8 6 4.0908 2.8381 0.7666 9 8 3.3283 3.5771 1.3527 10 7 5.4174 3.0740 0.8006 11 6 5.9383 4.2225 1.5460 12 1 5.1889 4.9268 1.9074 13 6 7.2892 4.7928 1.1089 14 1 7.7741 4.4007 0.2151 15 6 7.6487 6.2290 1.5469 16 7 8.2771 6.0675 2.8786 17 6 9.3594 6.7374 3.3835 18 1 9.8697 6.3587 4.2569 19 6 9.8008 7.9033 2.7729 20 7 9.0802 8.4627 1.8242 21 14 11.4174 8.6782 3.2978 22 1 12.5244 7.7143 3.0730 23 1 11.6605 9.9057 2.4981 24 1 11.3527 9.0304 4.7389 25 6 7.4689 5.0168 3.5402 26 6 7.1706 3.9935 2.4234 27 1 7.5798 2.9883 2.5235 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5137 0.8901 33 1 1.4750 2.4328 1.8278 34 1 1.3359 3.4446 0.3700 35 1 0.1331 2.1716 0.6879 36 1 2.8413 1.2453 -2.0948 37 1 2.5947 2.9872 -1.5412 38 1 6.0272 2.4827 0.3321 39 1 8.3539 6.6748 0.8454 40 1 6.7493 6.8402 1.6206 41 1 9.3888 9.2772 1.3972 42 1 8.0385 4.5482 4.3428 43 1 6.5413 5.4383 3.9274 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026130769.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:10:51 Heat of formation + Delta-G solvation = 42.296286 kcal Electronic energy + Delta-G solvation = -21426.663606 eV Core-core repulsion = 18281.286552 eV Total energy + Delta-G solvation = -3145.377053 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.33918 -38.83705 -37.27617 -34.42574 -32.75485 -32.30038 -30.25442 -28.15729 -27.14631 -25.92145 -24.51013 -23.94908 -21.60975 -20.47166 -20.00551 -19.28923 -18.87260 -17.08023 -16.86354 -16.16358 -15.40638 -14.86560 -14.75223 -14.52478 -14.31896 -13.63765 -13.32562 -13.12318 -12.84771 -12.75275 -12.48672 -12.39271 -12.20560 -11.86494 -11.54077 -11.47799 -11.33665 -11.04029 -10.97845 -10.81514 -10.38617 -10.29146 -10.20342 -10.14416 -9.97565 -9.73430 -9.44014 -9.16317 -8.72347 -8.29842 -6.86768 -5.79543 -3.13838 2.51943 3.10139 3.39240 3.43359 3.44747 3.60961 4.32374 4.41022 4.45611 4.47619 4.62294 4.80286 4.98887 5.04536 5.17066 5.18614 5.38140 5.39110 5.39913 5.49973 5.57136 5.64181 5.68479 5.76996 5.83164 5.84492 5.91458 5.92691 6.03024 6.09112 6.17070 6.25449 6.49532 6.54491 6.70281 6.84581 6.90871 7.35063 7.52996 7.64145 7.71258 8.20660 8.35946 9.10958 9.73709 10.50986 11.34837 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.055458 B = 0.002881 C = 0.002865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 504.765750 B = 9716.421660 C = 9771.767551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.088 4.088 3 C -0.089 4.089 4 C -0.110 4.110 5 C -0.147 4.147 6 C -0.188 4.188 7 H 0.120 0.880 8 C 0.544 3.456 9 O -0.533 6.533 10 N -0.695 5.695 11 C 0.097 3.903 12 H 0.131 0.869 13 C -0.180 4.180 14 H 0.102 0.898 15 C 0.185 3.815 16 N -0.593 5.593 17 C -0.228 4.228 18 H 0.077 0.923 19 C -0.006 4.006 20 N -0.916 5.916 21 Si 0.914 3.086 22 H -0.284 1.284 23 H -0.290 1.290 24 H -0.283 1.283 25 C 0.156 3.844 26 C -0.183 4.183 27 H 0.102 0.898 28 H 0.056 0.944 29 H 0.052 0.948 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.064 0.936 35 H 0.055 0.945 36 H 0.102 0.898 37 H 0.100 0.900 38 H 0.398 0.602 39 H 0.091 0.909 40 H 0.025 0.975 41 H 0.255 0.745 42 H 0.051 0.949 43 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.133 -17.161 -6.600 22.594 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.125 4.125 3 C -0.089 4.089 4 C -0.166 4.166 5 C -0.185 4.185 6 C -0.209 4.209 7 H 0.138 0.862 8 C 0.330 3.670 9 O -0.410 6.410 10 N -0.343 5.343 11 C -0.009 4.009 12 H 0.148 0.852 13 C -0.201 4.201 14 H 0.120 0.880 15 C 0.059 3.941 16 N -0.316 5.316 17 C -0.356 4.356 18 H 0.094 0.906 19 C -0.203 4.203 20 N -0.562 5.562 21 Si 0.744 3.256 22 H -0.211 1.211 23 H -0.215 1.215 24 H -0.210 1.210 25 C 0.029 3.971 26 C -0.205 4.205 27 H 0.120 0.880 28 H 0.075 0.925 29 H 0.072 0.928 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.086 0.914 34 H 0.083 0.917 35 H 0.074 0.926 36 H 0.120 0.880 37 H 0.118 0.882 38 H 0.232 0.768 39 H 0.109 0.891 40 H 0.043 0.957 41 H 0.065 0.935 42 H 0.070 0.930 43 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges -13.517 -16.369 -6.187 22.112 hybrid contribution 1.476 -0.044 -0.116 1.482 sum -12.040 -16.413 -6.303 21.309 Atomic orbital electron populations 1.21829 0.95253 1.01398 1.02386 1.21098 0.96307 0.93082 1.02005 1.21595 0.90746 0.96990 0.99609 1.21474 0.97276 0.97323 1.00553 1.23211 1.01708 1.02947 0.90595 1.22356 0.96135 0.99199 1.03260 0.86198 1.19612 0.81942 0.85084 0.80342 1.90705 1.56598 1.48677 1.44988 1.45365 1.07071 1.29333 1.52535 1.21833 0.91056 0.90036 0.97990 0.85187 1.24643 0.97324 1.00587 0.97570 0.87968 1.21053 0.96717 0.87804 0.88524 1.45164 1.32233 1.42670 1.11560 1.18952 1.02668 1.02654 1.11315 0.90570 1.24908 0.99351 0.96430 0.99599 1.69888 1.37394 1.20693 1.28186 0.86178 0.83124 0.78439 0.77881 1.21100 1.21535 1.20950 1.21115 0.94547 0.88930 0.92512 1.24363 1.01195 0.99707 0.95206 0.88033 0.92504 0.92845 0.91891 0.91752 0.91464 0.91396 0.91679 0.92609 0.88000 0.88173 0.76833 0.89086 0.95663 0.93471 0.93021 0.95485 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 8.92 37.16 0.33 -0.70 16 2 C -0.09 -0.66 6.12 -26.73 -0.16 -0.82 16 3 C -0.09 -0.86 2.47 -154.51 -0.38 -1.24 16 4 C -0.11 -1.25 7.73 37.16 0.29 -0.96 16 5 C -0.15 -1.34 9.52 -26.73 -0.25 -1.59 16 6 C -0.19 -1.94 5.91 -91.77 -0.54 -2.48 16 7 H 0.12 0.98 8.14 -51.93 -0.42 0.56 16 8 C 0.54 7.68 7.59 -10.98 -0.08 7.60 16 9 O -0.53 -9.37 12.67 5.55 0.07 -9.30 16 10 N -0.70 -9.56 5.56 -53.80 -0.30 -9.86 16 11 C 0.10 1.67 5.97 -67.93 -0.41 1.26 16 12 H 0.13 2.55 7.40 -51.93 -0.38 2.17 16 13 C -0.18 -3.43 7.06 -89.21 -0.63 -4.06 16 14 H 0.10 1.78 8.14 -51.93 -0.42 1.36 16 15 C 0.19 4.51 5.70 -2.41 -0.01 4.49 16 16 N -0.59 -15.39 3.38 -168.86 -0.57 -15.96 16 17 C -0.23 -6.39 10.35 -15.06 -0.16 -6.55 16 18 H 0.08 2.06 7.85 -52.48 -0.41 1.64 16 19 C -0.01 -0.16 5.40 -17.43 -0.09 -0.26 16 20 N -0.92 -26.97 10.86 55.49 0.60 -26.37 16 21 Si 0.91 21.99 29.56 -169.99 -5.03 16.96 16 22 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 23 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 24 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 25 C 0.16 3.36 7.04 -2.41 -0.02 3.34 16 26 C -0.18 -3.33 7.06 -89.22 -0.63 -3.96 16 27 H 0.10 1.66 8.14 -51.93 -0.42 1.23 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.05 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.06 0.45 6.45 -51.93 -0.33 0.12 16 31 H 0.06 0.41 7.90 -51.93 -0.41 0.00 16 32 H 0.07 0.51 8.14 -51.92 -0.42 0.09 16 33 H 0.07 0.90 7.27 -51.93 -0.38 0.52 16 34 H 0.06 0.85 7.01 -51.93 -0.36 0.49 16 35 H 0.06 0.52 5.59 -51.93 -0.29 0.23 16 36 H 0.10 0.71 8.05 -51.93 -0.42 0.29 16 37 H 0.10 1.02 8.05 -51.93 -0.42 0.60 16 38 H 0.40 4.35 8.83 -40.82 -0.36 3.99 16 39 H 0.09 2.45 6.51 -51.93 -0.34 2.11 16 40 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 41 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 42 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 43 H 0.03 0.60 8.14 -51.93 -0.42 0.17 16 LS Contribution 342.69 15.07 5.16 5.16 Total: -1.00 -31.46 342.69 -9.86 -41.32 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: -7.05 Total: 3.97 kcal Atomic # 6 Polarization: -3.18 SS G_CDS: -2.75 Total: -5.93 kcal Atomic # 7 Polarization: -51.92 SS G_CDS: -0.27 Total: -52.18 kcal Atomic # 8 Polarization: -9.37 SS G_CDS: 0.07 Total: -9.30 kcal Atomic # 14 Polarization: 21.99 SS G_CDS: -5.03 Total: 16.96 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.46 -9.86 -41.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026130769.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.612 kcal (2) G-P(sol) polarization free energy of solvation -31.459 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.857 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.316 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds