Wall clock time and date at job start Tue Mar 31 2020 00:10:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52997 * 109.46940 * 2 1 4 4 C 1.53001 * 115.55202 * 34.27332 * 3 2 1 5 5 C 1.53002 * 117.49482 * 248.60573 * 3 2 1 6 6 C 1.52997 * 60.00157 * 252.50908 * 5 3 2 7 7 H 1.09003 * 117.49959 * 107.49044 * 6 5 3 8 8 C 1.50703 * 117.49992 * 252.51278 * 6 5 3 9 9 O 1.21283 * 120.00104 * 68.61777 * 8 6 5 10 10 N 1.34778 * 120.00206 * 248.62315 * 8 6 5 11 11 C 1.46495 * 120.00316 * 180.02562 * 10 8 6 12 12 H 1.09002 * 115.51600 * 350.41071 * 11 10 8 13 13 C 1.53007 * 117.44007 * 204.99996 * 11 10 8 14 14 H 1.08991 * 119.54012 * 5.70711 * 13 11 10 15 15 C 1.54390 * 118.11832 * 160.81050 * 13 11 10 16 16 N 1.48139 * 104.62098 * 87.18663 * 15 13 11 17 17 C 1.36935 * 127.83829 * 140.40878 * 16 15 13 18 18 H 1.08005 * 120.00314 * 195.57265 * 17 16 15 19 19 C 1.38816 * 120.00094 * 15.57530 * 17 16 15 20 20 N 1.31614 * 119.99638 * 9.09957 * 19 17 16 21 21 Si 1.86802 * 120.00114 * 189.09362 * 19 17 16 22 22 H 1.48500 * 109.46826 * 60.00240 * 21 19 17 23 23 H 1.48501 * 109.46639 * 179.97438 * 21 19 17 24 24 H 1.48498 * 109.47281 * 300.00044 * 21 19 17 25 25 C 1.48147 * 104.32249 * 320.41280 * 16 15 13 26 26 C 1.52998 * 117.44282 * 135.75719 * 11 10 8 27 27 H 1.08992 * 119.54325 * 355.88338 * 26 11 10 28 28 H 1.08998 * 109.46834 * 60.00671 * 1 2 3 29 29 H 1.08999 * 109.46685 * 180.02562 * 1 2 3 30 30 H 1.08996 * 109.47410 * 300.00265 * 1 2 3 31 31 H 1.08996 * 109.47410 * 239.99735 * 2 1 3 32 32 H 1.09008 * 109.47357 * 119.99237 * 2 1 3 33 33 H 1.09000 * 109.47094 * 85.58885 * 4 3 2 34 34 H 1.09007 * 109.47249 * 205.58560 * 4 3 2 35 35 H 1.08996 * 109.47346 * 325.58532 * 4 3 2 36 36 H 1.08996 * 117.50358 * 359.97438 * 5 3 2 37 37 H 1.09007 * 117.49814 * 144.99890 * 5 3 2 38 38 H 0.97001 * 119.99316 * 359.97438 * 10 8 6 39 39 H 1.09003 * 110.40169 * 205.97002 * 15 13 11 40 40 H 1.08995 * 110.40866 * 328.28049 * 15 13 11 41 41 H 0.97006 * 119.99793 * 180.02562 * 20 19 17 42 42 H 1.09004 * 110.40603 * 158.37342 * 25 16 15 43 43 H 1.08997 * 110.40488 * 280.79451 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.1845 2.4449 0.7773 5 6 2.7422 1.9434 -1.2637 6 6 3.5550 1.6562 0.0003 7 1 4.1884 0.7691 0.0006 8 6 4.0908 2.8381 0.7666 9 8 3.3283 3.5771 1.3527 10 7 5.4174 3.0740 0.8006 11 6 5.9383 4.2225 1.5460 12 1 5.1889 4.9268 1.9074 13 6 7.2892 4.7928 1.1089 14 1 7.7741 4.4007 0.2151 15 6 7.6487 6.2290 1.5469 16 7 8.2771 6.0675 2.8786 17 6 9.3594 6.7374 3.3835 18 1 9.8697 6.3587 4.2569 19 6 9.8008 7.9033 2.7729 20 7 9.0802 8.4627 1.8242 21 14 11.4174 8.6782 3.2978 22 1 12.5244 7.7143 3.0730 23 1 11.6605 9.9057 2.4981 24 1 11.3527 9.0304 4.7389 25 6 7.4689 5.0168 3.5402 26 6 7.1706 3.9935 2.4234 27 1 7.5798 2.9883 2.5235 28 1 -0.3633 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3634 0.5138 0.8899 31 1 1.8934 -0.5138 -0.8899 32 1 1.8934 -0.5137 0.8901 33 1 1.4750 2.4328 1.8278 34 1 1.3359 3.4446 0.3700 35 1 0.1331 2.1716 0.6879 36 1 2.8413 1.2453 -2.0948 37 1 2.5947 2.9872 -1.5412 38 1 6.0272 2.4827 0.3321 39 1 8.3539 6.6748 0.8454 40 1 6.7493 6.8402 1.6206 41 1 9.3888 9.2772 1.3972 42 1 8.0385 4.5482 4.3428 43 1 6.5413 5.4383 3.9274 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026130769.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:10:50 Heat of formation + Delta-G solvation = 23.252619 kcal Electronic energy + Delta-G solvation = -21427.489401 eV Core-core repulsion = 18281.286552 eV Total energy + Delta-G solvation = -3146.202849 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.44356 -40.28495 -38.33721 -36.05488 -34.35571 -33.08255 -32.06248 -29.04727 -28.95174 -27.74944 -25.64093 -24.61456 -23.25199 -21.95825 -21.21460 -20.91694 -19.70102 -18.88191 -18.09598 -17.54420 -16.75087 -16.29335 -15.74791 -15.59056 -15.48476 -15.18266 -14.91610 -14.66516 -14.05341 -13.78600 -13.63691 -13.38908 -13.28557 -13.23363 -12.99622 -12.92524 -12.69296 -12.59245 -12.16396 -12.07689 -12.00090 -11.88132 -11.68362 -11.63125 -11.04162 -10.89901 -10.83995 -10.73091 -10.41216 -9.69817 -8.95073 -7.93415 -5.30821 1.44340 1.46056 1.49581 1.56362 1.94680 2.47420 2.72649 2.90495 3.26780 3.53285 3.64193 3.69753 3.80463 3.87260 3.91463 4.09574 4.12949 4.16885 4.35651 4.48291 4.49324 4.57199 4.78392 4.80577 4.86288 4.90352 4.93508 4.95655 5.00102 5.06538 5.15781 5.23364 5.25681 5.34635 5.39587 5.42870 5.45267 5.53645 5.61548 5.63382 6.14258 6.56067 6.97917 7.26888 7.64887 8.43543 9.20444 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.055458 B = 0.002881 C = 0.002865 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 504.765750 B = 9716.421660 C = 9771.767551 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.082 4.082 3 C -0.094 4.094 4 C -0.106 4.106 5 C -0.135 4.135 6 C -0.189 4.189 7 H 0.153 0.847 8 C 0.537 3.463 9 O -0.575 6.575 10 N -0.682 5.682 11 C 0.117 3.883 12 H 0.101 0.899 13 C -0.178 4.178 14 H 0.127 0.873 15 C 0.189 3.811 16 N -0.616 5.616 17 C -0.244 4.244 18 H 0.083 0.917 19 C -0.064 4.064 20 N -0.949 5.949 21 Si 0.984 3.016 22 H -0.274 1.274 23 H -0.294 1.294 24 H -0.275 1.275 25 C 0.148 3.852 26 C -0.165 4.165 27 H 0.135 0.865 28 H 0.057 0.943 29 H 0.066 0.934 30 H 0.053 0.947 31 H 0.084 0.916 32 H 0.068 0.932 33 H 0.043 0.957 34 H 0.039 0.961 35 H 0.073 0.927 36 H 0.134 0.866 37 H 0.083 0.917 38 H 0.417 0.583 39 H 0.060 0.940 40 H -0.007 1.007 41 H 0.251 0.749 42 H 0.064 0.936 43 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.748 -20.330 -7.432 25.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.120 4.120 3 C -0.095 4.095 4 C -0.163 4.163 5 C -0.172 4.172 6 C -0.210 4.210 7 H 0.170 0.830 8 C 0.326 3.674 9 O -0.454 6.454 10 N -0.331 5.331 11 C 0.010 3.990 12 H 0.119 0.881 13 C -0.199 4.199 14 H 0.145 0.855 15 C 0.063 3.937 16 N -0.341 5.341 17 C -0.372 4.372 18 H 0.101 0.899 19 C -0.257 4.257 20 N -0.597 5.597 21 Si 0.811 3.189 22 H -0.200 1.200 23 H -0.220 1.220 24 H -0.201 1.201 25 C 0.022 3.978 26 C -0.187 4.187 27 H 0.153 0.847 28 H 0.076 0.924 29 H 0.085 0.915 30 H 0.072 0.928 31 H 0.103 0.897 32 H 0.086 0.914 33 H 0.062 0.938 34 H 0.058 0.942 35 H 0.091 0.909 36 H 0.152 0.848 37 H 0.102 0.898 38 H 0.254 0.746 39 H 0.078 0.922 40 H 0.011 0.989 41 H 0.060 0.940 42 H 0.083 0.917 43 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges -13.135 -19.596 -7.025 24.614 hybrid contribution 1.239 0.984 0.192 1.594 sum -11.896 -18.612 -6.833 23.121 Atomic orbital electron populations 1.21833 0.94973 1.02171 1.02000 1.21112 0.96529 0.91288 1.03036 1.21694 0.90060 0.97945 0.99799 1.21380 0.98933 0.96792 0.99183 1.23305 1.00104 1.02865 0.90931 1.22400 0.96791 0.98325 1.03488 0.82967 1.20407 0.81478 0.85677 0.79851 1.90708 1.57553 1.50388 1.46732 1.45192 1.07528 1.28310 1.52114 1.21336 0.89662 0.90605 0.97414 0.88080 1.24325 0.99330 0.97252 0.99025 0.85482 1.20787 0.94451 0.90681 0.87831 1.45473 1.32422 1.43475 1.12685 1.19378 1.03327 1.03023 1.11495 0.89885 1.25806 1.02841 0.97138 0.99932 1.70099 1.39105 1.20946 1.29507 0.85078 0.78985 0.77237 0.77561 1.19976 1.21974 1.20085 1.21249 0.93693 0.88829 0.93986 1.24271 1.01522 0.99972 0.92892 0.84684 0.92377 0.91511 0.92825 0.89724 0.91354 0.93843 0.94234 0.90881 0.84797 0.89820 0.74572 0.92183 0.98881 0.94035 0.91739 0.96591 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 8.92 71.98 0.64 -1.06 16 2 C -0.08 -0.97 6.12 30.59 0.19 -0.79 16 3 C -0.09 -1.63 2.47 -52.18 -0.13 -1.76 16 4 C -0.11 -2.42 7.73 71.98 0.56 -1.86 16 5 C -0.13 -2.07 9.52 30.59 0.29 -1.78 16 6 C -0.19 -3.36 5.91 -11.54 -0.07 -3.43 16 7 H 0.15 1.75 8.14 -2.39 -0.02 1.73 16 8 C 0.54 14.54 7.59 87.66 0.67 15.20 16 9 O -0.57 -20.61 12.67 -3.04 -0.04 -20.65 16 10 N -0.68 -17.34 5.56 -442.52 -2.46 -19.80 16 11 C 0.12 3.97 5.97 44.99 0.27 4.24 16 12 H 0.10 4.11 7.40 -2.39 -0.02 4.09 16 13 C -0.18 -6.70 7.06 -9.88 -0.07 -6.77 16 14 H 0.13 4.17 8.14 -2.39 -0.02 4.15 16 15 C 0.19 9.55 5.70 86.54 0.49 10.05 16 16 N -0.62 -32.69 3.38 -688.16 -2.33 -35.02 16 17 C -0.24 -13.86 10.35 84.03 0.87 -12.99 16 18 H 0.08 4.48 7.85 -2.91 -0.02 4.45 16 19 C -0.06 -3.65 5.40 84.86 0.46 -3.19 16 20 N -0.95 -57.93 10.86 21.65 0.24 -57.69 16 21 Si 0.98 45.72 29.56 68.60 2.03 47.74 16 22 H -0.27 -12.17 7.11 99.48 0.71 -11.46 16 23 H -0.29 -13.70 7.11 99.48 0.71 -13.00 16 24 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 25 C 0.15 6.39 7.04 86.53 0.61 7.00 16 26 C -0.17 -5.75 7.06 -9.88 -0.07 -5.82 16 27 H 0.14 3.87 8.14 -2.39 -0.02 3.85 16 28 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 29 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 30 H 0.05 0.69 6.45 -2.39 -0.02 0.67 16 31 H 0.08 0.69 7.90 -2.39 -0.02 0.68 16 32 H 0.07 0.81 8.14 -2.38 -0.02 0.79 16 33 H 0.04 1.18 7.27 -2.39 -0.02 1.17 16 34 H 0.04 1.08 7.01 -2.38 -0.02 1.06 16 35 H 0.07 1.35 5.59 -2.39 -0.01 1.34 16 36 H 0.13 1.24 8.05 -2.39 -0.02 1.22 16 37 H 0.08 1.59 8.05 -2.38 -0.02 1.57 16 38 H 0.42 7.60 8.83 -92.71 -0.82 6.78 16 39 H 0.06 3.39 6.51 -2.39 -0.02 3.37 16 40 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 41 H 0.25 14.80 8.31 -92.70 -0.77 14.03 16 42 H 0.06 2.58 8.14 -2.38 -0.02 2.57 16 43 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 Total: -1.00 -71.75 342.69 2.32 -69.42 By element: Atomic # 1 Polarization: 18.77 SS G_CDS: 0.18 Total: 18.95 kcal Atomic # 6 Polarization: -7.67 SS G_CDS: 4.71 Total: -2.96 kcal Atomic # 7 Polarization: -107.96 SS G_CDS: -4.55 Total: -112.51 kcal Atomic # 8 Polarization: -20.61 SS G_CDS: -0.04 Total: -20.65 kcal Atomic # 14 Polarization: 45.72 SS G_CDS: 2.03 Total: 47.74 kcal Total: -71.75 2.32 -69.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026130769.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.677 kcal (2) G-P(sol) polarization free energy of solvation -71.749 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.929 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.324 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.425 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds