Wall clock time and date at job start Tue Mar 31 2020 01:02:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.32997 * 119.99989 * 2 1 4 4 C 1.50696 * 119.99703 * 359.97438 * 3 2 1 5 5 C 1.47101 * 120.00103 * 180.02562 * 3 2 1 6 6 O 1.21613 * 119.99373 * 259.71685 * 5 3 2 7 7 N 1.34776 * 120.00376 * 79.71293 * 5 3 2 8 8 C 1.49209 * 126.05762 * 354.97516 * 7 5 3 9 9 C 1.50348 * 104.86359 * 172.95568 * 8 7 5 10 10 H 1.09005 * 110.04914 * 278.93763 * 9 8 7 11 11 C 1.51205 * 125.53745 * 144.31053 * 9 8 7 12 12 C 1.56403 * 101.50010 * 203.98460 * 11 9 8 13 13 C 1.55940 * 105.85928 * 25.03311 * 12 11 9 14 14 H 1.09000 * 110.49208 * 248.83480 * 13 12 11 15 15 N 1.46501 * 110.49294 * 126.30817 * 13 12 11 16 16 C 1.36933 * 119.99739 * 86.45399 * 15 13 12 17 17 H 1.07992 * 120.00478 * 359.97438 * 16 15 13 18 18 C 1.38816 * 119.99422 * 179.97438 * 16 15 13 19 19 N 1.31616 * 120.00673 * 0.02562 * 18 16 15 20 20 Si 1.86808 * 119.99825 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47037 * 89.99738 * 20 18 16 22 22 H 1.48498 * 109.47034 * 209.99896 * 20 18 16 23 23 H 1.48501 * 109.47010 * 330.00174 * 20 18 16 24 24 C 1.50290 * 104.15437 * 7.50843 * 13 12 11 25 25 H 1.08999 * 109.99806 * 79.58527 * 24 13 12 26 26 C 1.49698 * 126.05737 * 174.99581 * 7 5 3 27 27 H 1.08993 * 109.47359 * 300.00433 * 1 2 3 28 28 H 1.08997 * 109.46798 * 60.01170 * 1 2 3 29 29 H 1.08999 * 109.46759 * 180.02562 * 1 2 3 30 30 H 1.08001 * 120.00270 * 179.97438 * 2 1 3 31 31 H 1.08998 * 109.47503 * 275.05625 * 4 3 2 32 32 H 1.09003 * 109.47661 * 35.06061 * 4 3 2 33 33 H 1.09006 * 109.47267 * 155.06172 * 4 3 2 34 34 H 1.09008 * 110.35933 * 291.79863 * 8 7 5 35 35 H 1.08996 * 110.36819 * 53.99417 * 8 7 5 36 36 H 1.09004 * 111.05967 * 85.93011 * 11 9 8 37 37 H 1.09002 * 111.02409 * 322.02165 * 11 9 8 38 38 H 1.09000 * 110.18134 * 265.91229 * 12 11 9 39 39 H 1.09005 * 110.18359 * 144.15441 * 12 11 9 40 40 H 0.97001 * 120.00078 * 266.45383 * 15 13 12 41 41 H 0.96994 * 120.00515 * 179.97438 * 19 18 16 42 42 H 1.08991 * 110.84540 * 36.64838 * 26 7 5 43 43 H 1.09005 * 110.84258 * 273.03832 * 26 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1518 0.0000 4 6 1.4185 2.4568 -0.0006 5 6 3.6430 1.1518 -0.0006 6 8 4.2514 1.3396 1.0356 7 7 4.3165 0.9437 -1.1493 8 6 3.7146 0.5969 -2.4698 9 6 4.8606 0.6490 -3.4416 10 1 5.0547 1.6806 -3.7356 11 6 5.0456 -0.2646 -4.6321 12 6 6.5930 -0.1879 -4.8466 13 6 7.1971 0.1910 -3.4598 14 1 7.6074 1.2005 -3.4853 15 7 8.2306 -0.7716 -3.0704 16 6 9.5225 -0.5958 -3.4889 17 1 9.7795 0.2520 -4.1065 18 6 10.5018 -1.5076 -3.1194 19 7 10.1886 -2.5413 -2.3672 20 14 12.2644 -1.2676 -3.6898 21 1 13.0004 -0.4497 -2.6925 22 1 12.9242 -2.5907 -3.8287 23 1 12.2697 -0.5716 -5.0016 24 6 6.0278 0.1216 -2.5182 25 1 5.8283 -0.9152 -2.2474 26 6 5.8011 1.0190 -1.3263 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5136 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 2.0471 -0.9353 0.0004 31 1 1.1587 2.7260 -1.0244 32 1 0.5081 2.3510 0.5894 33 1 2.0436 3.2376 0.4328 34 1 3.2877 -0.4057 -2.4404 35 1 2.9511 1.3256 -2.7418 36 1 4.5111 0.1142 -5.5034 37 1 4.7339 -1.2821 -4.3964 38 1 6.8329 0.5786 -5.5835 39 1 6.9760 -1.1551 -5.1722 40 1 7.9997 -1.5333 -2.5160 41 1 10.8728 -3.1786 -2.1094 42 1 6.3166 0.6333 -0.4468 43 1 6.1144 2.0400 -1.5442 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026232502.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:02:14 Heat of formation + Delta-G solvation = 1.785220 kcal Electronic energy + Delta-G solvation = -22013.058981 eV Core-core repulsion = 18865.925236 eV Total energy + Delta-G solvation = -3147.133745 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.55240 -38.77831 -35.71804 -35.27455 -33.36287 -30.91886 -30.04419 -29.15228 -28.47009 -26.37763 -25.35770 -23.42103 -22.93203 -20.69162 -20.20482 -19.16938 -18.16830 -17.13028 -16.67807 -16.42500 -15.26669 -15.16354 -14.74161 -14.23328 -14.03284 -13.87614 -13.78013 -13.19750 -13.06529 -12.89607 -12.80006 -12.51356 -12.28545 -12.09363 -11.92056 -11.57733 -11.52509 -11.40618 -11.03310 -10.80570 -10.77086 -10.45897 -10.15825 -10.12859 -9.87915 -9.71887 -9.54710 -9.15116 -8.91436 -8.60667 -6.97326 -5.77349 -3.06642 1.61476 2.64554 2.99340 3.43558 3.48713 3.50267 4.10755 4.46873 4.57840 4.74819 4.86645 4.97864 5.10187 5.12562 5.26002 5.26422 5.37560 5.42500 5.45978 5.48562 5.56633 5.58376 5.63752 5.69877 5.74076 5.86453 5.92596 5.99689 6.04785 6.12699 6.15845 6.27639 6.33718 6.35446 6.41582 6.50569 6.63551 6.77876 7.05695 7.54841 7.70187 8.17636 8.40782 9.52120 10.08925 10.43338 11.45102 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.027981 B = 0.003800 C = 0.003592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.443373 B = 7366.710906 C = 7793.844098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.122 4.122 3 C -0.160 4.160 4 C -0.104 4.104 5 C 0.569 3.431 6 O -0.540 6.540 7 N -0.620 5.620 8 C 0.126 3.874 9 C -0.130 4.130 10 H 0.081 0.919 11 C -0.097 4.097 12 C -0.144 4.144 13 C 0.197 3.803 14 H 0.054 0.946 15 N -0.720 5.720 16 C -0.241 4.241 17 H 0.071 0.929 18 C -0.012 4.012 19 N -0.932 5.932 20 Si 0.906 3.094 21 H -0.290 1.290 22 H -0.292 1.292 23 H -0.282 1.282 24 C -0.117 4.117 25 H 0.081 0.919 26 C 0.127 3.873 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.064 0.936 30 H 0.114 0.886 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.065 0.935 34 H 0.068 0.932 35 H 0.069 0.931 36 H 0.060 0.940 37 H 0.065 0.935 38 H 0.054 0.946 39 H 0.074 0.926 40 H 0.384 0.616 41 H 0.255 0.745 42 H 0.083 0.917 43 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.759 7.156 -1.208 21.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.141 4.141 3 C -0.163 4.163 4 C -0.161 4.161 5 C 0.358 3.642 6 O -0.417 6.417 7 N -0.354 5.354 8 C 0.004 3.996 9 C -0.150 4.150 10 H 0.099 0.901 11 C -0.135 4.135 12 C -0.185 4.185 13 C 0.085 3.915 14 H 0.072 0.928 15 N -0.361 5.361 16 C -0.372 4.372 17 H 0.089 0.911 18 C -0.208 4.208 19 N -0.580 5.580 20 Si 0.737 3.263 21 H -0.217 1.217 22 H -0.218 1.218 23 H -0.208 1.208 24 C -0.137 4.137 25 H 0.099 0.901 26 C 0.007 3.993 27 H 0.089 0.911 28 H 0.089 0.911 29 H 0.083 0.917 30 H 0.132 0.868 31 H 0.091 0.909 32 H 0.091 0.909 33 H 0.084 0.916 34 H 0.086 0.914 35 H 0.088 0.912 36 H 0.078 0.922 37 H 0.084 0.916 38 H 0.073 0.927 39 H 0.093 0.907 40 H 0.218 0.782 41 H 0.065 0.935 42 H 0.102 0.898 43 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -20.286 7.324 -0.625 21.576 hybrid contribution 0.993 -0.287 -0.159 1.046 sum -19.292 7.037 -0.783 20.551 Atomic orbital electron populations 1.20867 0.92100 1.02715 1.02250 1.23237 0.96482 0.96854 0.97505 1.21395 0.92550 0.97118 1.05242 1.20671 0.99555 0.93598 1.02252 1.18174 0.87451 0.76283 0.82330 1.90826 1.69937 1.49930 1.31055 1.49906 1.08027 1.68992 1.08510 1.21216 0.95570 1.00539 0.82297 1.22231 0.95517 1.01210 0.96035 0.90053 1.21782 0.97721 0.98399 0.95589 1.23807 0.92513 1.02344 0.99798 1.20080 0.87117 0.94267 0.89991 0.92813 1.42490 1.04423 1.27965 1.61187 1.19235 0.84966 1.07189 1.25801 0.91130 1.24748 0.98125 0.97481 1.00478 1.69655 1.32857 1.14681 1.40813 0.86211 0.85118 0.76797 0.78180 1.21707 1.21814 1.20755 1.22483 0.97059 0.99877 0.94245 0.90075 1.21531 0.78928 0.99737 0.99151 0.91105 0.91089 0.91678 0.86821 0.90949 0.90886 0.91580 0.91373 0.91232 0.92154 0.91632 0.92690 0.90712 0.78166 0.93483 0.89814 0.91043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.82 8.98 36.01 0.32 -0.49 16 2 C -0.12 -1.19 9.95 -36.12 -0.36 -1.55 16 3 C -0.16 -1.84 4.98 -102.85 -0.51 -2.35 16 4 C -0.10 -0.92 9.46 36.00 0.34 -0.57 16 5 C 0.57 8.83 7.22 -12.67 -0.09 8.73 16 6 O -0.54 -10.68 17.42 5.27 0.09 -10.59 16 7 N -0.62 -8.92 3.43 -172.96 -0.59 -9.51 16 8 C 0.13 1.43 6.38 -3.86 -0.02 1.41 16 9 C -0.13 -1.63 2.77 -90.16 -0.25 -1.88 16 10 H 0.08 0.99 8.14 -51.93 -0.42 0.57 16 11 C -0.10 -1.22 6.73 -25.81 -0.17 -1.39 16 12 C -0.14 -2.35 6.73 -23.33 -0.16 -2.51 16 13 C 0.20 3.71 3.39 -67.71 -0.23 3.48 16 14 H 0.05 1.04 8.11 -51.93 -0.42 0.62 16 15 N -0.72 -17.58 5.12 -53.21 -0.27 -17.86 16 16 C -0.24 -6.56 9.97 -15.06 -0.15 -6.71 16 17 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 18 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 19 N -0.93 -28.06 13.06 55.49 0.72 -27.34 16 20 Si 0.91 22.30 29.55 -169.99 -5.02 17.27 16 21 H -0.29 -7.15 7.11 56.52 0.40 -6.74 16 22 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 23 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 24 C -0.12 -1.87 2.41 -90.33 -0.22 -2.09 16 25 H 0.08 1.42 7.93 -51.93 -0.41 1.01 16 26 C 0.13 2.05 6.83 -3.31 -0.02 2.03 16 27 H 0.07 0.44 7.41 -51.93 -0.38 0.05 16 28 H 0.07 0.40 8.10 -51.93 -0.42 -0.02 16 29 H 0.06 0.38 8.14 -51.93 -0.42 -0.05 16 30 H 0.11 1.18 8.05 -52.49 -0.42 0.76 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.52 6.70 -51.93 -0.35 0.17 16 33 H 0.07 0.65 8.08 -51.93 -0.42 0.23 16 34 H 0.07 0.74 8.14 -51.92 -0.42 0.31 16 35 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 36 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 37 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 38 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.07 1.40 7.98 -51.93 -0.41 0.99 16 40 H 0.38 10.10 7.66 -40.82 -0.31 9.78 16 41 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 42 H 0.08 1.54 8.06 -51.93 -0.42 1.12 16 43 H 0.07 1.10 8.14 -51.93 -0.42 0.67 16 LS Contribution 348.70 15.07 5.25 5.25 Total: -1.00 -32.08 348.70 -8.76 -40.84 By element: Atomic # 1 Polarization: 13.60 SS G_CDS: -7.32 Total: 6.27 kcal Atomic # 6 Polarization: -2.73 SS G_CDS: -1.62 Total: -4.35 kcal Atomic # 7 Polarization: -54.57 SS G_CDS: -0.14 Total: -54.71 kcal Atomic # 8 Polarization: -10.68 SS G_CDS: 0.09 Total: -10.59 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -32.08 -8.76 -40.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026232502.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.629 kcal (2) G-P(sol) polarization free energy of solvation -32.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.547 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.844 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds