Wall clock time and date at job start Tue Mar 31 2020 01:02:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.32997 * 119.99989 * 2 1 4 4 C 1.50696 * 119.99703 * 359.97438 * 3 2 1 5 5 C 1.47101 * 120.00103 * 180.02562 * 3 2 1 6 6 O 1.21613 * 119.99373 * 259.71685 * 5 3 2 7 7 N 1.34776 * 120.00376 * 79.71293 * 5 3 2 8 8 C 1.49209 * 126.05762 * 354.97516 * 7 5 3 9 9 C 1.50348 * 104.86359 * 172.95568 * 8 7 5 10 10 H 1.09005 * 110.04914 * 278.93763 * 9 8 7 11 11 C 1.51205 * 125.53745 * 144.31053 * 9 8 7 12 12 C 1.56403 * 101.50010 * 203.98460 * 11 9 8 13 13 C 1.55940 * 105.85928 * 25.03311 * 12 11 9 14 14 H 1.09000 * 110.49208 * 248.83480 * 13 12 11 15 15 N 1.46501 * 110.49294 * 126.30817 * 13 12 11 16 16 C 1.36933 * 119.99739 * 86.45399 * 15 13 12 17 17 H 1.07992 * 120.00478 * 359.97438 * 16 15 13 18 18 C 1.38816 * 119.99422 * 179.97438 * 16 15 13 19 19 N 1.31616 * 120.00673 * 0.02562 * 18 16 15 20 20 Si 1.86808 * 119.99825 * 180.02562 * 18 16 15 21 21 H 1.48499 * 109.47037 * 89.99738 * 20 18 16 22 22 H 1.48498 * 109.47034 * 209.99896 * 20 18 16 23 23 H 1.48501 * 109.47010 * 330.00174 * 20 18 16 24 24 C 1.50290 * 104.15437 * 7.50843 * 13 12 11 25 25 H 1.08999 * 109.99806 * 79.58527 * 24 13 12 26 26 C 1.49698 * 126.05737 * 174.99581 * 7 5 3 27 27 H 1.08993 * 109.47359 * 300.00433 * 1 2 3 28 28 H 1.08997 * 109.46798 * 60.01170 * 1 2 3 29 29 H 1.08999 * 109.46759 * 180.02562 * 1 2 3 30 30 H 1.08001 * 120.00270 * 179.97438 * 2 1 3 31 31 H 1.08998 * 109.47503 * 275.05625 * 4 3 2 32 32 H 1.09003 * 109.47661 * 35.06061 * 4 3 2 33 33 H 1.09006 * 109.47267 * 155.06172 * 4 3 2 34 34 H 1.09008 * 110.35933 * 291.79863 * 8 7 5 35 35 H 1.08996 * 110.36819 * 53.99417 * 8 7 5 36 36 H 1.09004 * 111.05967 * 85.93011 * 11 9 8 37 37 H 1.09002 * 111.02409 * 322.02165 * 11 9 8 38 38 H 1.09000 * 110.18134 * 265.91229 * 12 11 9 39 39 H 1.09005 * 110.18359 * 144.15441 * 12 11 9 40 40 H 0.97001 * 120.00078 * 266.45383 * 15 13 12 41 41 H 0.96994 * 120.00515 * 179.97438 * 19 18 16 42 42 H 1.08991 * 110.84540 * 36.64838 * 26 7 5 43 43 H 1.09005 * 110.84258 * 273.03832 * 26 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1720 1.1518 0.0000 4 6 1.4185 2.4568 -0.0006 5 6 3.6430 1.1518 -0.0006 6 8 4.2514 1.3396 1.0356 7 7 4.3165 0.9437 -1.1493 8 6 3.7146 0.5969 -2.4698 9 6 4.8606 0.6490 -3.4416 10 1 5.0547 1.6806 -3.7356 11 6 5.0456 -0.2646 -4.6321 12 6 6.5930 -0.1879 -4.8466 13 6 7.1971 0.1910 -3.4598 14 1 7.6074 1.2005 -3.4853 15 7 8.2306 -0.7716 -3.0704 16 6 9.5225 -0.5958 -3.4889 17 1 9.7795 0.2520 -4.1065 18 6 10.5018 -1.5076 -3.1194 19 7 10.1886 -2.5413 -2.3672 20 14 12.2644 -1.2676 -3.6898 21 1 13.0004 -0.4497 -2.6925 22 1 12.9242 -2.5907 -3.8287 23 1 12.2697 -0.5716 -5.0016 24 6 6.0278 0.1216 -2.5182 25 1 5.8283 -0.9152 -2.2474 26 6 5.8011 1.0190 -1.3263 27 1 -0.3634 0.5139 0.8899 28 1 -0.3633 0.5136 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 2.0471 -0.9353 0.0004 31 1 1.1587 2.7260 -1.0244 32 1 0.5081 2.3510 0.5894 33 1 2.0436 3.2376 0.4328 34 1 3.2877 -0.4057 -2.4404 35 1 2.9511 1.3256 -2.7418 36 1 4.5111 0.1142 -5.5034 37 1 4.7339 -1.2821 -4.3964 38 1 6.8329 0.5786 -5.5835 39 1 6.9760 -1.1551 -5.1722 40 1 7.9997 -1.5333 -2.5160 41 1 10.8728 -3.1786 -2.1094 42 1 6.3166 0.6333 -0.4468 43 1 6.1144 2.0400 -1.5442 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026232502.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:02:13 Heat of formation + Delta-G solvation = -18.430386 kcal Electronic energy + Delta-G solvation = -22013.935596 eV Core-core repulsion = 18865.925236 eV Total energy + Delta-G solvation = -3148.010360 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.76547 -40.01266 -36.80416 -36.56957 -35.06330 -32.69145 -31.14032 -30.07417 -29.75054 -27.34895 -26.74714 -24.91370 -24.42688 -21.74579 -21.42396 -20.51221 -19.29750 -19.01357 -17.74978 -17.65642 -16.63530 -16.43567 -16.17457 -15.63306 -15.39815 -15.19590 -14.62798 -14.47047 -14.26597 -14.02724 -13.75088 -13.35504 -13.30770 -13.18116 -13.12147 -13.02413 -12.89518 -12.62965 -12.47063 -12.25825 -12.15499 -12.12883 -11.81329 -11.62035 -11.37709 -11.08651 -10.96954 -10.83123 -9.92893 -9.79994 -8.99997 -7.94404 -5.22805 0.80106 1.46230 1.48001 1.48216 1.56153 1.87412 2.55960 2.93764 3.39859 3.50875 3.66578 3.88283 4.02587 4.03324 4.22331 4.24798 4.37180 4.42184 4.50580 4.51344 4.55441 4.64224 4.68211 4.74218 4.75578 4.82888 4.90599 4.93033 4.95748 5.06418 5.07636 5.15062 5.16503 5.22024 5.35466 5.47986 5.50794 5.51662 5.63603 5.69517 6.27740 6.40963 6.98912 7.33234 8.09951 8.31981 9.29299 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.027981 B = 0.003800 C = 0.003592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1000.443373 B = 7366.710906 C = 7793.844098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.105 4.105 3 C -0.180 4.180 4 C -0.098 4.098 5 C 0.562 3.438 6 O -0.598 6.598 7 N -0.618 5.618 8 C 0.128 3.872 9 C -0.106 4.106 10 H 0.094 0.906 11 C -0.083 4.083 12 C -0.138 4.138 13 C 0.187 3.813 14 H 0.049 0.951 15 N -0.735 5.735 16 C -0.236 4.236 17 H 0.078 0.922 18 C -0.078 4.078 19 N -0.972 5.972 20 Si 0.971 3.029 21 H -0.291 1.291 22 H -0.297 1.297 23 H -0.266 1.266 24 C -0.120 4.120 25 H 0.062 0.938 26 C 0.127 3.873 27 H 0.080 0.920 28 H 0.091 0.909 29 H 0.074 0.926 30 H 0.101 0.899 31 H 0.095 0.905 32 H 0.093 0.907 33 H 0.047 0.953 34 H 0.079 0.921 35 H 0.105 0.895 36 H 0.096 0.904 37 H 0.065 0.935 38 H 0.069 0.931 39 H 0.046 0.954 40 H 0.370 0.630 41 H 0.249 0.751 42 H 0.046 0.954 43 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.750 8.483 -3.242 25.427 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.125 4.125 3 C -0.183 4.183 4 C -0.155 4.155 5 C 0.352 3.648 6 O -0.479 6.479 7 N -0.351 5.351 8 C 0.007 3.993 9 C -0.126 4.126 10 H 0.113 0.887 11 C -0.121 4.121 12 C -0.178 4.178 13 C 0.078 3.922 14 H 0.067 0.933 15 N -0.375 5.375 16 C -0.368 4.368 17 H 0.096 0.904 18 C -0.270 4.270 19 N -0.623 5.623 20 Si 0.800 3.200 21 H -0.218 1.218 22 H -0.224 1.224 23 H -0.191 1.191 24 C -0.140 4.140 25 H 0.080 0.920 26 C 0.005 3.995 27 H 0.098 0.902 28 H 0.110 0.890 29 H 0.093 0.907 30 H 0.119 0.881 31 H 0.113 0.887 32 H 0.111 0.889 33 H 0.066 0.934 34 H 0.097 0.903 35 H 0.123 0.877 36 H 0.115 0.885 37 H 0.084 0.916 38 H 0.088 0.912 39 H 0.065 0.935 40 H 0.202 0.798 41 H 0.058 0.942 42 H 0.065 0.935 43 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -23.329 8.691 -2.726 25.044 hybrid contribution 1.891 -0.688 0.479 2.068 sum -21.438 8.002 -2.247 22.993 Atomic orbital electron populations 1.20941 0.89203 1.03896 1.03557 1.23467 0.98399 0.95629 0.94957 1.21349 0.89791 0.99113 1.08053 1.20712 0.99451 0.91398 1.03900 1.19010 0.89297 0.74935 0.81539 1.90787 1.71486 1.52583 1.33084 1.49989 1.07099 1.68279 1.09744 1.21421 0.95553 1.02326 0.79961 1.22212 0.93701 1.01665 0.94976 0.88725 1.21703 0.94685 0.98771 0.96899 1.23600 0.95345 1.01111 0.97752 1.20373 0.86848 0.92645 0.92359 0.93271 1.42711 1.04961 1.28594 1.61208 1.19641 0.86209 1.06576 1.24359 0.90420 1.25554 1.02143 0.97750 1.01587 1.69821 1.33683 1.15872 1.42957 0.85175 0.80309 0.76317 0.78203 1.21794 1.22398 1.19076 1.22242 0.97850 0.98905 0.95023 0.91990 1.21375 0.80532 0.99878 0.97682 0.90178 0.89044 0.90704 0.88089 0.88703 0.88875 0.93380 0.90283 0.87685 0.88513 0.91593 0.91206 0.93536 0.79843 0.94192 0.93531 0.90298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.12 8.98 71.24 0.64 -0.48 16 2 C -0.11 -1.81 9.95 24.52 0.24 -1.56 16 3 C -0.18 -3.82 4.98 -18.70 -0.09 -3.92 16 4 C -0.10 -1.45 9.46 71.23 0.67 -0.78 16 5 C 0.56 17.50 7.22 86.57 0.63 18.13 16 6 O -0.60 -24.84 17.42 -4.07 -0.07 -24.91 16 7 N -0.62 -17.47 3.43 -819.37 -2.81 -20.28 16 8 C 0.13 2.51 6.38 85.00 0.54 3.05 16 9 C -0.11 -2.34 2.77 -10.50 -0.03 -2.37 16 10 H 0.09 1.92 8.14 -2.38 -0.02 1.90 16 11 C -0.08 -1.81 6.73 31.19 0.21 -1.60 16 12 C -0.14 -4.30 6.73 32.80 0.22 -4.08 16 13 C 0.19 7.08 3.39 45.13 0.15 7.24 16 14 H 0.05 1.90 8.11 -2.39 -0.02 1.88 16 15 N -0.74 -37.15 5.12 -322.26 -1.65 -38.80 16 16 C -0.24 -13.10 9.97 84.04 0.84 -12.27 16 17 H 0.08 4.11 7.83 -2.91 -0.02 4.09 16 18 C -0.08 -4.56 5.50 84.86 0.47 -4.09 16 19 N -0.97 -60.73 13.06 21.65 0.28 -60.45 16 20 Si 0.97 46.71 29.55 68.60 2.03 48.73 16 21 H -0.29 -13.89 7.11 99.48 0.71 -13.18 16 22 H -0.30 -14.45 7.11 99.48 0.71 -13.74 16 23 H -0.27 -11.95 7.11 99.48 0.71 -11.25 16 24 C -0.12 -3.88 2.41 -10.61 -0.03 -3.91 16 25 H 0.06 2.25 7.93 -2.39 -0.02 2.23 16 26 C 0.13 4.23 6.83 85.08 0.58 4.81 16 27 H 0.08 0.67 7.41 -2.39 -0.02 0.65 16 28 H 0.09 0.56 8.10 -2.39 -0.02 0.54 16 29 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 30 H 0.10 1.97 8.05 -2.91 -0.02 1.94 16 31 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 32 H 0.09 0.99 6.70 -2.39 -0.02 0.98 16 33 H 0.05 0.89 8.08 -2.38 -0.02 0.87 16 34 H 0.08 1.44 8.14 -2.38 -0.02 1.42 16 35 H 0.11 1.44 8.14 -2.39 -0.02 1.43 16 36 H 0.10 1.54 8.14 -2.38 -0.02 1.52 16 37 H 0.07 1.48 8.14 -2.39 -0.02 1.47 16 38 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 39 H 0.05 1.73 7.98 -2.38 -0.02 1.71 16 40 H 0.37 20.49 7.66 -92.71 -0.71 19.78 16 41 H 0.25 15.16 8.31 -92.71 -0.77 14.39 16 42 H 0.05 1.86 8.06 -2.39 -0.02 1.85 16 43 H 0.08 2.47 8.14 -2.38 -0.02 2.45 16 Total: -1.00 -74.26 348.70 3.10 -71.17 By element: Atomic # 1 Polarization: 26.09 SS G_CDS: 0.27 Total: 26.36 kcal Atomic # 6 Polarization: -6.88 SS G_CDS: 5.05 Total: -1.83 kcal Atomic # 7 Polarization: -115.35 SS G_CDS: -4.18 Total: -119.52 kcal Atomic # 8 Polarization: -24.84 SS G_CDS: -0.07 Total: -24.91 kcal Atomic # 14 Polarization: 46.71 SS G_CDS: 2.03 Total: 48.73 kcal Total: -74.26 3.10 -71.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026232502.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.736 kcal (2) G-P(sol) polarization free energy of solvation -74.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds