Wall clock time and date at job start Tue Mar 31 2020 01:02:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.32994 * 120.00642 * 2 1 4 4 C 1.50700 * 119.99557 * 359.97438 * 3 2 1 5 5 C 1.47099 * 120.00315 * 179.97438 * 3 2 1 6 6 O 1.21608 * 120.00031 * 259.82755 * 5 3 2 7 7 N 1.34780 * 119.99523 * 79.83402 * 5 3 2 8 8 C 1.46904 * 125.61960 * 354.96662 * 7 5 3 9 9 C 1.54207 * 107.63311 * 178.52127 * 8 7 5 10 10 H 1.09002 * 113.72971 * 214.28299 * 9 8 7 11 11 C 1.54840 * 108.05253 * 87.00460 * 9 8 7 12 12 C 1.54128 * 104.63693 * 214.54560 * 11 9 8 13 13 C 1.53863 * 106.49512 * 24.49676 * 12 11 9 14 14 H 1.08993 * 109.92660 * 238.96265 * 13 12 11 15 15 N 1.46502 * 109.92237 * 117.85042 * 13 12 11 16 16 C 1.36935 * 119.99989 * 86.81490 * 15 13 12 17 17 H 1.08002 * 119.99853 * 0.02562 * 16 15 13 18 18 C 1.38816 * 120.00344 * 180.02562 * 16 15 13 19 19 N 1.31616 * 119.99771 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99940 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47520 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.46872 * 120.00052 * 20 18 16 23 23 H 1.48504 * 109.46993 * 239.99624 * 20 18 16 24 24 C 1.53719 * 107.20270 * 358.40955 * 13 12 11 25 25 H 1.08992 * 112.96639 * 214.78026 * 24 13 12 26 26 C 1.47348 * 125.61300 * 175.01131 * 7 5 3 27 27 H 1.08994 * 109.47335 * 179.97438 * 1 2 3 28 28 H 1.09008 * 109.46906 * 300.00212 * 1 2 3 29 29 H 1.08998 * 109.47008 * 59.99855 * 1 2 3 30 30 H 1.08006 * 119.99730 * 179.97438 * 2 1 3 31 31 H 1.08997 * 109.47373 * 275.06057 * 4 3 2 32 32 H 1.09000 * 109.47327 * 35.05679 * 4 3 2 33 33 H 1.08994 * 109.47141 * 155.05725 * 4 3 2 34 34 H 1.08991 * 109.82354 * 58.99251 * 8 7 5 35 35 H 1.09007 * 109.82125 * 298.04322 * 8 7 5 36 36 H 1.09005 * 110.40617 * 95.75275 * 11 9 8 37 37 H 1.09004 * 110.40613 * 333.33639 * 11 9 8 38 38 H 1.09004 * 110.04947 * 265.23876 * 12 11 9 39 39 H 1.09001 * 110.05167 * 143.76021 * 12 11 9 40 40 H 0.97001 * 120.00384 * 266.82171 * 15 13 12 41 41 H 0.97001 * 120.00159 * 180.02562 * 19 18 16 42 42 H 1.08995 * 110.30094 * 322.80346 * 26 7 5 43 43 H 1.09004 * 110.29359 * 84.84662 * 26 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1721 1.1517 0.0000 4 6 1.4186 2.4568 -0.0006 5 6 3.6431 1.1516 0.0006 6 8 4.2507 1.3378 1.0374 7 7 4.3173 0.9453 -1.1481 8 6 3.7153 0.6061 -2.4445 9 6 4.8564 0.5015 -3.4764 10 1 4.5767 0.8367 -4.4752 11 6 5.4086 -0.9445 -3.4362 12 6 6.9181 -0.7926 -3.7078 13 6 7.2970 0.6366 -3.2822 14 1 7.7147 1.1784 -4.1306 15 7 8.2728 0.5901 -2.1904 16 6 9.6103 0.5035 -2.4709 17 1 9.9459 0.4699 -3.4969 18 6 10.5350 0.4590 -1.4364 19 7 10.1260 0.4995 -0.1861 20 14 12.3596 0.3416 -1.8191 21 1 12.5559 0.3122 -3.2907 22 1 13.0615 1.5201 -1.2501 23 1 12.9120 -0.9001 -1.2205 24 6 6.0085 1.3251 -2.8040 25 1 5.9795 2.3877 -3.0450 26 6 5.7798 1.0218 -1.3101 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 2.0470 -0.9354 0.0004 31 1 1.1588 2.7260 -1.0244 32 1 0.5082 2.3511 0.5894 33 1 2.0437 3.2374 0.4328 34 1 3.0170 1.3878 -2.7435 35 1 3.1942 -0.3485 -2.3716 36 1 4.9419 -1.5513 -4.2122 37 1 5.2419 -1.3879 -2.4544 38 1 7.1228 -0.9332 -4.7692 39 1 7.4787 -1.5190 -3.1193 40 1 7.9715 0.6206 -1.2689 41 1 10.7721 0.4688 0.5368 42 1 6.1866 1.8263 -0.6975 43 1 6.2404 0.0716 -1.0398 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026232504.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:02:17 Heat of formation + Delta-G solvation = -8.208069 kcal Electronic energy + Delta-G solvation = -22410.939478 eV Core-core repulsion = 19263.372392 eV Total energy + Delta-G solvation = -3147.567087 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.46011 -38.58727 -35.64413 -35.03071 -33.20730 -30.96092 -29.81110 -28.99838 -28.38165 -26.44826 -25.29312 -23.60825 -23.10009 -20.65626 -19.73007 -18.85395 -18.21952 -17.21758 -16.89166 -15.80972 -15.68501 -15.01601 -14.73459 -14.10502 -13.92872 -13.78916 -13.33303 -13.26826 -12.88413 -12.80894 -12.69271 -12.47773 -12.29250 -12.23182 -12.01548 -11.56487 -11.48197 -11.27290 -10.81916 -10.65912 -10.55833 -10.43604 -10.27124 -10.11253 -9.89129 -9.60990 -9.58390 -9.07878 -8.89205 -8.39476 -6.94415 -5.74093 -3.04063 1.68449 2.75727 3.23380 3.44793 3.50023 3.52762 4.42540 4.57163 4.60370 4.76199 4.86723 4.99821 5.06681 5.16985 5.30971 5.41872 5.46679 5.48816 5.49445 5.52591 5.61582 5.63462 5.68101 5.76285 5.78265 5.90084 5.96851 6.00565 6.07889 6.24801 6.28475 6.38128 6.47607 6.52401 6.53700 6.56798 6.68478 6.80639 7.11016 7.71299 7.73172 8.31863 8.44008 9.54780 10.12053 10.45349 11.48180 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.026034 B = 0.004357 C = 0.003958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.259568 B = 6425.126593 C = 7072.888332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.126 4.126 3 C -0.156 4.156 4 C -0.104 4.104 5 C 0.564 3.436 6 O -0.533 6.533 7 N -0.610 5.610 8 C 0.110 3.890 9 C -0.103 4.103 10 H 0.102 0.898 11 C -0.116 4.116 12 C -0.145 4.145 13 C 0.182 3.818 14 H 0.054 0.946 15 N -0.726 5.726 16 C -0.242 4.242 17 H 0.071 0.929 18 C -0.012 4.012 19 N -0.930 5.930 20 Si 0.905 3.095 21 H -0.281 1.281 22 H -0.292 1.292 23 H -0.292 1.292 24 C -0.103 4.103 25 H 0.088 0.912 26 C 0.116 3.884 27 H 0.063 0.937 28 H 0.070 0.930 29 H 0.070 0.930 30 H 0.113 0.887 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.066 0.934 34 H 0.062 0.938 35 H 0.065 0.935 36 H 0.057 0.943 37 H 0.063 0.937 38 H 0.051 0.949 39 H 0.073 0.927 40 H 0.386 0.614 41 H 0.255 0.745 42 H 0.079 0.921 43 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.605 -0.020 -6.261 21.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.145 4.145 3 C -0.159 4.159 4 C -0.161 4.161 5 C 0.353 3.647 6 O -0.410 6.410 7 N -0.344 5.344 8 C -0.013 4.013 9 C -0.123 4.123 10 H 0.120 0.880 11 C -0.153 4.153 12 C -0.186 4.186 13 C 0.072 3.928 14 H 0.072 0.928 15 N -0.369 5.369 16 C -0.373 4.373 17 H 0.089 0.911 18 C -0.208 4.208 19 N -0.578 5.578 20 Si 0.737 3.263 21 H -0.206 1.206 22 H -0.219 1.219 23 H -0.219 1.219 24 C -0.123 4.123 25 H 0.106 0.894 26 C -0.005 4.005 27 H 0.082 0.918 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.131 0.869 31 H 0.090 0.910 32 H 0.091 0.909 33 H 0.085 0.915 34 H 0.080 0.920 35 H 0.083 0.917 36 H 0.076 0.924 37 H 0.081 0.919 38 H 0.070 0.930 39 H 0.092 0.908 40 H 0.223 0.777 41 H 0.065 0.935 42 H 0.098 0.902 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -20.114 0.089 -5.675 20.900 hybrid contribution 1.038 -0.205 0.137 1.067 sum -19.076 -0.115 -5.538 19.864 Atomic orbital electron populations 1.20855 0.92159 1.02594 1.02225 1.23204 0.96408 0.96829 0.98038 1.21423 0.92670 0.97087 1.04745 1.20676 0.99550 0.93691 1.02217 1.18163 0.87386 0.76700 0.82498 1.90855 1.69858 1.49409 1.30887 1.48571 1.08475 1.68854 1.08463 1.21973 0.96079 0.99965 0.83324 1.23263 0.94056 0.97189 0.97742 0.87959 1.22414 0.97013 0.94781 1.01121 1.22976 0.94205 1.01044 1.00366 1.20675 0.87785 0.92355 0.92029 0.92829 1.42724 1.02187 1.88162 1.03795 1.19288 0.82853 1.42659 0.92538 0.91104 1.24758 0.97955 1.02906 0.95228 1.69674 1.33040 1.57321 0.97770 0.86146 0.85717 0.77202 0.77275 1.20583 1.21904 1.21917 1.23247 0.95685 0.99513 0.93892 0.89354 1.22129 0.78673 1.03233 0.96511 0.91769 0.91131 0.91166 0.86894 0.90957 0.90928 0.91486 0.91991 0.91658 0.92382 0.91860 0.92997 0.90784 0.77741 0.93471 0.90245 0.89965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.86 8.98 36.00 0.32 -0.54 16 2 C -0.13 -1.30 9.93 -36.13 -0.36 -1.66 16 3 C -0.16 -1.94 4.94 -102.85 -0.51 -2.44 16 4 C -0.10 -1.01 9.46 36.01 0.34 -0.67 16 5 C 0.56 9.52 7.19 -12.66 -0.09 9.43 16 6 O -0.53 -11.54 17.40 5.27 0.09 -11.45 16 7 N -0.61 -9.57 3.32 -172.63 -0.57 -10.14 16 8 C 0.11 1.30 5.67 -3.19 -0.02 1.29 16 9 C -0.10 -1.28 4.26 -86.98 -0.37 -1.65 16 10 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 11 C -0.12 -1.57 5.58 -25.17 -0.14 -1.71 16 12 C -0.15 -2.46 6.56 -25.69 -0.17 -2.63 16 13 C 0.18 3.48 3.22 -67.11 -0.22 3.26 16 14 H 0.05 1.03 8.09 -51.93 -0.42 0.61 16 15 N -0.73 -17.90 4.80 -52.63 -0.25 -18.16 16 16 C -0.24 -6.67 9.95 -15.06 -0.15 -6.82 16 17 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 18 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 19 N -0.93 -28.55 13.06 55.49 0.72 -27.83 16 20 Si 0.91 22.52 29.55 -169.99 -5.02 17.50 16 21 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 22 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 23 H -0.29 -7.33 7.11 56.52 0.40 -6.92 16 24 C -0.10 -1.66 4.05 -87.61 -0.36 -2.02 16 25 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 26 C 0.12 2.14 4.37 -2.98 -0.01 2.12 16 27 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.07 0.47 7.41 -51.92 -0.38 0.09 16 29 H 0.07 0.42 8.10 -51.93 -0.42 0.00 16 30 H 0.11 1.22 8.05 -52.48 -0.42 0.80 16 31 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.07 0.57 6.70 -51.93 -0.35 0.22 16 33 H 0.07 0.74 8.08 -51.93 -0.42 0.32 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.07 0.70 7.83 -51.92 -0.41 0.30 16 36 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.06 0.94 7.28 -51.93 -0.38 0.56 16 38 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.07 1.47 7.91 -51.93 -0.41 1.06 16 40 H 0.39 10.22 5.36 -40.82 -0.22 10.00 16 41 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 42 H 0.08 1.67 8.08 -51.93 -0.42 1.25 16 43 H 0.08 1.72 6.32 -51.93 -0.33 1.39 16 LS Contribution 341.44 15.07 5.15 5.15 Total: -1.00 -32.96 341.44 -8.79 -41.75 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: -7.08 Total: 7.66 kcal Atomic # 6 Polarization: -2.66 SS G_CDS: -1.82 Total: -4.49 kcal Atomic # 7 Polarization: -56.02 SS G_CDS: -0.10 Total: -56.12 kcal Atomic # 8 Polarization: -11.54 SS G_CDS: 0.09 Total: -11.45 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.96 -8.79 -41.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026232504.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.547 kcal (2) G-P(sol) polarization free energy of solvation -32.964 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds