Wall clock time and date at job start Tue Mar 31 2020 01:02:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.32994 * 120.00642 * 2 1 4 4 C 1.50700 * 119.99557 * 359.97438 * 3 2 1 5 5 C 1.47099 * 120.00315 * 179.97438 * 3 2 1 6 6 O 1.21608 * 120.00031 * 259.82755 * 5 3 2 7 7 N 1.34780 * 119.99523 * 79.83402 * 5 3 2 8 8 C 1.46904 * 125.61960 * 354.96662 * 7 5 3 9 9 C 1.54207 * 107.63311 * 178.52127 * 8 7 5 10 10 H 1.09002 * 113.72971 * 214.28299 * 9 8 7 11 11 C 1.54840 * 108.05253 * 87.00460 * 9 8 7 12 12 C 1.54128 * 104.63693 * 214.54560 * 11 9 8 13 13 C 1.53863 * 106.49512 * 24.49676 * 12 11 9 14 14 H 1.08993 * 109.92660 * 238.96265 * 13 12 11 15 15 N 1.46502 * 109.92237 * 117.85042 * 13 12 11 16 16 C 1.36935 * 119.99989 * 86.81490 * 15 13 12 17 17 H 1.08002 * 119.99853 * 0.02562 * 16 15 13 18 18 C 1.38816 * 120.00344 * 180.02562 * 16 15 13 19 19 N 1.31616 * 119.99771 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 119.99940 * 180.02562 * 18 16 15 21 21 H 1.48497 * 109.47520 * 0.02562 * 20 18 16 22 22 H 1.48504 * 109.46872 * 120.00052 * 20 18 16 23 23 H 1.48504 * 109.46993 * 239.99624 * 20 18 16 24 24 C 1.53719 * 107.20270 * 358.40955 * 13 12 11 25 25 H 1.08992 * 112.96639 * 214.78026 * 24 13 12 26 26 C 1.47348 * 125.61300 * 175.01131 * 7 5 3 27 27 H 1.08994 * 109.47335 * 179.97438 * 1 2 3 28 28 H 1.09008 * 109.46906 * 300.00212 * 1 2 3 29 29 H 1.08998 * 109.47008 * 59.99855 * 1 2 3 30 30 H 1.08006 * 119.99730 * 179.97438 * 2 1 3 31 31 H 1.08997 * 109.47373 * 275.06057 * 4 3 2 32 32 H 1.09000 * 109.47327 * 35.05679 * 4 3 2 33 33 H 1.08994 * 109.47141 * 155.05725 * 4 3 2 34 34 H 1.08991 * 109.82354 * 58.99251 * 8 7 5 35 35 H 1.09007 * 109.82125 * 298.04322 * 8 7 5 36 36 H 1.09005 * 110.40617 * 95.75275 * 11 9 8 37 37 H 1.09004 * 110.40613 * 333.33639 * 11 9 8 38 38 H 1.09004 * 110.04947 * 265.23876 * 12 11 9 39 39 H 1.09001 * 110.05167 * 143.76021 * 12 11 9 40 40 H 0.97001 * 120.00384 * 266.82171 * 15 13 12 41 41 H 0.97001 * 120.00159 * 180.02562 * 19 18 16 42 42 H 1.08995 * 110.30094 * 322.80346 * 26 7 5 43 43 H 1.09004 * 110.29359 * 84.84662 * 26 7 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1721 1.1517 0.0000 4 6 1.4186 2.4568 -0.0006 5 6 3.6431 1.1516 0.0006 6 8 4.2507 1.3378 1.0374 7 7 4.3173 0.9453 -1.1481 8 6 3.7153 0.6061 -2.4445 9 6 4.8564 0.5015 -3.4764 10 1 4.5767 0.8367 -4.4752 11 6 5.4086 -0.9445 -3.4362 12 6 6.9181 -0.7926 -3.7078 13 6 7.2970 0.6366 -3.2822 14 1 7.7147 1.1784 -4.1306 15 7 8.2728 0.5901 -2.1904 16 6 9.6103 0.5035 -2.4709 17 1 9.9459 0.4699 -3.4969 18 6 10.5350 0.4590 -1.4364 19 7 10.1260 0.4995 -0.1861 20 14 12.3596 0.3416 -1.8191 21 1 12.5559 0.3122 -3.2907 22 1 13.0615 1.5201 -1.2501 23 1 12.9120 -0.9001 -1.2205 24 6 6.0085 1.3251 -2.8040 25 1 5.9795 2.3877 -3.0450 26 6 5.7798 1.0218 -1.3101 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 2.0470 -0.9354 0.0004 31 1 1.1588 2.7260 -1.0244 32 1 0.5082 2.3511 0.5894 33 1 2.0437 3.2374 0.4328 34 1 3.0170 1.3878 -2.7435 35 1 3.1942 -0.3485 -2.3716 36 1 4.9419 -1.5513 -4.2122 37 1 5.2419 -1.3879 -2.4544 38 1 7.1228 -0.9332 -4.7692 39 1 7.4787 -1.5190 -3.1193 40 1 7.9715 0.6206 -1.2689 41 1 10.7721 0.4688 0.5368 42 1 6.1866 1.8263 -0.6975 43 1 6.2404 0.0716 -1.0398 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026232504.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 01:02:16 Heat of formation + Delta-G solvation = -29.814880 kcal Electronic energy + Delta-G solvation = -22411.876420 eV Core-core repulsion = 19263.372392 eV Total energy + Delta-G solvation = -3148.504028 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.74850 -39.91568 -36.71122 -36.51470 -34.91375 -32.74555 -30.90811 -30.02895 -29.80807 -27.50438 -26.62796 -25.33788 -24.49028 -21.76188 -20.97677 -20.32659 -19.53570 -18.97588 -17.98147 -17.24081 -16.89016 -16.72703 -16.14028 -15.68737 -15.19270 -14.75099 -14.60868 -14.44528 -14.23302 -13.98301 -13.71124 -13.66172 -13.33467 -13.28987 -13.24377 -13.04940 -12.90096 -12.64522 -12.39615 -12.21538 -12.12857 -11.79377 -11.62858 -11.58786 -11.49676 -11.33284 -10.94524 -10.90646 -9.92637 -9.71701 -9.00410 -7.94836 -5.23973 0.81006 1.44656 1.45993 1.47626 1.56061 2.02304 2.54919 3.27537 3.39261 3.43911 3.68064 3.77539 4.02871 4.17763 4.20767 4.30228 4.36835 4.38801 4.41510 4.50688 4.61400 4.65188 4.72124 4.75188 4.77106 4.86538 4.89310 4.93348 5.04799 5.06905 5.11174 5.15427 5.22927 5.24875 5.32007 5.48672 5.51368 5.52489 5.64901 5.69810 6.27342 6.47767 7.02311 7.32229 8.11017 8.31015 9.29160 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.026034 B = 0.004357 C = 0.003958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1075.259568 B = 6425.126593 C = 7072.888332 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.103 4.103 3 C -0.179 4.179 4 C -0.098 4.098 5 C 0.555 3.445 6 O -0.600 6.600 7 N -0.608 5.608 8 C 0.106 3.894 9 C -0.081 4.081 10 H 0.147 0.853 11 C -0.108 4.108 12 C -0.139 4.139 13 C 0.171 3.829 14 H 0.056 0.944 15 N -0.742 5.742 16 C -0.235 4.235 17 H 0.081 0.919 18 C -0.082 4.082 19 N -0.976 5.976 20 Si 0.973 3.027 21 H -0.261 1.261 22 H -0.296 1.296 23 H -0.297 1.297 24 C -0.099 4.099 25 H 0.098 0.902 26 C 0.124 3.876 27 H 0.076 0.924 28 H 0.079 0.921 29 H 0.092 0.908 30 H 0.103 0.897 31 H 0.096 0.904 32 H 0.094 0.906 33 H 0.043 0.957 34 H 0.096 0.904 35 H 0.085 0.915 36 H 0.096 0.904 37 H 0.042 0.958 38 H 0.074 0.926 39 H 0.034 0.966 40 H 0.372 0.628 41 H 0.248 0.752 42 H 0.036 0.964 43 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.846 -0.309 -9.572 25.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.122 4.122 3 C -0.182 4.182 4 C -0.155 4.155 5 C 0.346 3.654 6 O -0.482 6.482 7 N -0.340 5.340 8 C -0.015 4.015 9 C -0.099 4.099 10 H 0.165 0.835 11 C -0.146 4.146 12 C -0.179 4.179 13 C 0.062 3.938 14 H 0.074 0.926 15 N -0.384 5.384 16 C -0.367 4.367 17 H 0.099 0.901 18 C -0.274 4.274 19 N -0.627 5.627 20 Si 0.803 3.197 21 H -0.185 1.185 22 H -0.224 1.224 23 H -0.224 1.224 24 C -0.119 4.119 25 H 0.117 0.883 26 C 0.001 3.999 27 H 0.095 0.905 28 H 0.097 0.903 29 H 0.110 0.890 30 H 0.121 0.879 31 H 0.114 0.886 32 H 0.113 0.887 33 H 0.062 0.938 34 H 0.114 0.886 35 H 0.103 0.897 36 H 0.114 0.886 37 H 0.061 0.939 38 H 0.093 0.907 39 H 0.053 0.947 40 H 0.206 0.794 41 H 0.057 0.943 42 H 0.055 0.945 43 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -23.407 -0.213 -9.094 25.113 hybrid contribution 2.006 -0.175 1.129 2.308 sum -21.402 -0.388 -7.966 22.839 Atomic orbital electron populations 1.20942 0.89021 1.03992 1.03555 1.23469 0.98445 0.95501 0.94831 1.21321 0.89470 0.99241 1.08200 1.20712 0.99413 0.91391 1.03954 1.19136 0.89495 0.75151 0.81649 1.90809 1.71653 1.52407 1.33298 1.48700 1.07195 1.68026 1.10040 1.22278 0.96210 1.02186 0.80813 1.23356 0.92048 0.94928 0.99612 0.83498 1.22380 0.94576 0.96361 1.01291 1.22783 0.96402 0.97938 1.00807 1.21029 0.88017 0.94270 0.90482 0.92550 1.42994 1.02488 1.88234 1.04662 1.19742 0.84282 1.39899 0.92767 0.90131 1.25609 1.02465 1.04194 0.95115 1.69867 1.34063 1.60022 0.98764 0.85065 0.80318 0.76418 0.77938 1.18470 1.22393 1.22402 1.23158 0.95980 1.00525 0.92244 0.88341 1.21749 0.80673 0.99735 0.97770 0.90481 0.90298 0.88962 0.87912 0.88561 0.88705 0.93791 0.88627 0.89683 0.88578 0.93928 0.90739 0.94688 0.79413 0.94296 0.94542 0.93488 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.17 8.98 71.24 0.64 -0.53 16 2 C -0.10 -1.88 9.93 24.52 0.24 -1.63 16 3 C -0.18 -4.20 4.94 -18.70 -0.09 -4.29 16 4 C -0.10 -1.68 9.46 71.24 0.67 -1.00 16 5 C 0.56 19.35 7.19 86.57 0.62 19.97 16 6 O -0.60 -28.09 17.40 -4.06 -0.07 -28.16 16 7 N -0.61 -19.20 3.32 -818.32 -2.72 -21.92 16 8 C 0.11 2.16 5.67 86.71 0.49 2.65 16 9 C -0.08 -1.69 4.26 -8.43 -0.04 -1.72 16 10 H 0.15 1.96 8.14 -2.39 -0.02 1.94 16 11 C -0.11 -2.65 5.58 31.60 0.18 -2.47 16 12 C -0.14 -4.56 6.56 31.27 0.21 -4.36 16 13 C 0.17 6.51 3.22 45.52 0.15 6.65 16 14 H 0.06 2.11 8.09 -2.39 -0.02 2.09 16 15 N -0.74 -38.33 4.80 -320.41 -1.54 -39.86 16 16 C -0.23 -13.29 9.95 84.03 0.84 -12.45 16 17 H 0.08 4.30 7.83 -2.91 -0.02 4.28 16 18 C -0.08 -4.90 5.50 84.86 0.47 -4.43 16 19 N -0.98 -63.27 13.06 21.65 0.28 -62.98 16 20 Si 0.97 47.66 29.55 68.60 2.03 49.69 16 21 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 22 H -0.30 -14.61 7.11 99.48 0.71 -13.90 16 23 H -0.30 -14.61 7.11 99.48 0.71 -13.90 16 24 C -0.10 -3.12 4.05 -8.84 -0.04 -3.16 16 25 H 0.10 2.92 8.14 -2.39 -0.02 2.90 16 26 C 0.12 4.85 4.37 86.60 0.38 5.23 16 27 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.08 0.73 7.41 -2.38 -0.02 0.71 16 29 H 0.09 0.59 8.10 -2.39 -0.02 0.57 16 30 H 0.10 2.05 8.05 -2.91 -0.02 2.03 16 31 H 0.10 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.09 1.18 6.70 -2.39 -0.02 1.16 16 33 H 0.04 0.95 8.08 -2.39 -0.02 0.93 16 34 H 0.10 1.42 8.14 -2.39 -0.02 1.40 16 35 H 0.08 1.47 7.83 -2.38 -0.02 1.45 16 36 H 0.10 1.70 8.14 -2.38 -0.02 1.68 16 37 H 0.04 1.22 7.28 -2.38 -0.02 1.21 16 38 H 0.07 2.10 8.14 -2.38 -0.02 2.08 16 39 H 0.03 1.41 7.91 -2.39 -0.02 1.39 16 40 H 0.37 21.23 5.36 -92.71 -0.50 20.73 16 41 H 0.25 15.67 8.31 -92.71 -0.77 14.89 16 42 H 0.04 1.70 8.08 -2.39 -0.02 1.68 16 43 H 0.05 2.15 6.32 -2.38 -0.02 2.14 16 Total: -1.00 -79.84 341.44 3.19 -76.64 By element: Atomic # 1 Polarization: 27.65 SS G_CDS: 0.49 Total: 28.14 kcal Atomic # 6 Polarization: -6.26 SS G_CDS: 4.72 Total: -1.54 kcal Atomic # 7 Polarization: -120.80 SS G_CDS: -3.97 Total: -124.77 kcal Atomic # 8 Polarization: -28.09 SS G_CDS: -0.07 Total: -28.16 kcal Atomic # 14 Polarization: 47.66 SS G_CDS: 2.03 Total: 49.69 kcal Total: -79.84 3.19 -76.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026232504.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.830 kcal (2) G-P(sol) polarization free energy of solvation -79.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.005 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds