Wall clock time and date at job start Tue Mar 31 2020 00:06:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47461 * 2 1 4 4 C 1.50699 * 115.54791 * 303.07189 * 3 2 1 5 5 O 1.21277 * 120.00201 * 112.89368 * 4 3 2 6 6 N 1.34780 * 119.99725 * 292.89725 * 4 3 2 7 7 C 1.47162 * 120.70604 * 184.56019 * 6 4 3 8 8 C 1.53886 * 108.03096 * 132.75386 * 7 6 4 9 9 H 1.09004 * 112.58239 * 182.22023 * 8 7 6 10 10 C 1.54132 * 107.71202 * 306.32646 * 8 7 6 11 11 C 1.54283 * 104.89181 * 89.40480 * 10 8 7 12 12 C 1.54548 * 104.84745 * 359.81150 * 11 10 8 13 13 H 1.09003 * 112.17929 * 146.40505 * 12 11 10 14 14 C 1.47973 * 120.64550 * 4.26128 * 6 4 3 15 15 N 1.48312 * 107.20759 * 58.36166 * 8 7 6 16 16 C 1.36929 * 128.07882 * 106.70116 * 15 8 7 17 17 H 1.08003 * 119.99881 * 164.95408 * 16 15 8 18 18 C 1.38813 * 119.99937 * 344.96112 * 16 15 8 19 19 N 1.31613 * 120.00164 * 351.00455 * 18 16 15 20 20 Si 1.86806 * 120.00055 * 171.00476 * 18 16 15 21 21 H 1.48493 * 109.47290 * 179.97438 * 20 18 16 22 22 H 1.48506 * 109.47075 * 300.00218 * 20 18 16 23 23 H 1.48504 * 109.46873 * 59.99802 * 20 18 16 24 24 C 1.53002 * 117.49935 * 88.74087 * 3 2 1 25 25 C 1.53000 * 117.49917 * 157.40185 * 3 2 1 26 26 H 1.09000 * 109.46737 * 65.37000 * 1 2 3 27 27 H 1.09000 * 109.47458 * 185.37369 * 1 2 3 28 28 H 1.09006 * 109.47246 * 305.37712 * 1 2 3 29 29 H 1.08994 * 109.47225 * 239.99527 * 2 1 3 30 30 H 1.09007 * 109.46684 * 119.99651 * 2 1 3 31 31 H 1.08996 * 109.75302 * 13.11983 * 7 6 4 32 32 H 1.09003 * 109.75168 * 252.38407 * 7 6 4 33 33 H 1.09001 * 110.49957 * 330.46962 * 10 8 7 34 34 H 1.08995 * 110.28031 * 208.23171 * 10 8 7 35 35 H 1.08994 * 110.36575 * 240.96925 * 11 10 8 36 36 H 1.08996 * 110.44969 * 118.69721 * 11 10 8 37 37 H 1.09000 * 109.69085 * 107.67644 * 14 6 4 38 38 H 1.09004 * 109.93088 * 346.86567 * 14 6 4 39 39 H 0.97002 * 120.00325 * 180.02562 * 19 18 16 40 40 H 1.08999 * 117.49336 * 215.00965 * 24 3 2 41 41 H 1.08999 * 117.49822 * 0.02562 * 24 3 2 42 42 H 1.08993 * 117.49893 * 359.97204 * 25 3 2 43 43 H 1.09000 * 117.49801 * 144.97480 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.5573 2.3026 -1.1394 5 8 0.8121 3.2345 -0.9222 6 7 1.9535 2.0361 -2.3997 7 6 1.5731 2.9233 -3.5105 8 6 2.8332 3.2057 -4.3475 9 1 2.6423 3.8912 -5.1732 10 6 3.9210 3.7361 -3.3930 11 6 4.6618 2.4768 -2.8973 12 6 3.9486 1.2970 -3.5960 13 1 4.6342 0.4828 -3.8312 14 6 2.7858 0.8484 -2.6935 15 7 3.3524 1.8972 -4.8142 16 6 3.2989 1.3689 -6.0763 17 1 3.9205 0.5245 -6.3351 18 6 2.4457 1.9188 -7.0233 19 7 1.5634 2.8274 -6.6654 20 14 2.5501 1.3692 -8.8056 21 1 1.5387 2.1013 -9.6094 22 1 3.9073 1.6588 -9.3343 23 1 2.2870 -0.0899 -8.8899 24 6 2.2475 2.1185 1.3568 25 6 3.4569 1.6908 0.5215 26 1 -0.3633 0.4283 -0.9342 27 1 -0.3634 -1.0231 0.0962 28 1 -0.3634 0.5950 0.8380 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 1.1760 3.8584 -3.1157 32 1 0.8209 2.4356 -4.1305 33 1 3.4682 4.2645 -2.5541 34 1 4.6062 4.3929 -3.9288 35 1 4.5733 2.3861 -1.8148 36 1 5.7112 2.5124 -3.1898 37 1 2.1866 0.0987 -3.2103 38 1 3.1788 0.4315 -1.7662 39 1 0.9669 3.2114 -7.3270 40 1 2.0346 3.1853 1.4253 41 1 2.0210 1.5354 2.2495 42 1 4.0254 0.8267 0.8650 43 1 4.0399 2.4761 0.0402 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001029458136.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:06:23 Heat of formation + Delta-G solvation = 22.707471 kcal Electronic energy + Delta-G solvation = -23763.343930 eV Core-core repulsion = 20617.117442 eV Total energy + Delta-G solvation = -3146.226488 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.34876 -38.34034 -36.44421 -33.64386 -32.38709 -31.83130 -30.58371 -29.27419 -26.44711 -24.72870 -23.85171 -23.43383 -22.41326 -21.75055 -19.64932 -19.14043 -18.35565 -16.75776 -16.05776 -15.46281 -15.33602 -14.86310 -14.65754 -14.08607 -13.80690 -13.59025 -13.24253 -13.00099 -12.71289 -12.67185 -12.22519 -11.78745 -11.75951 -11.66437 -11.44832 -11.35084 -11.08641 -10.99972 -10.87303 -10.79676 -10.34699 -10.27866 -10.08779 -9.86840 -9.82544 -9.64969 -9.52729 -9.11499 -8.75720 -8.00184 -6.83613 -5.83807 -3.19564 3.10019 3.35612 3.40930 3.41993 3.53776 3.87606 4.41279 4.62095 4.83943 4.88418 5.02154 5.20314 5.32106 5.38466 5.49440 5.57863 5.62050 5.64237 5.73120 5.77005 5.84050 5.86581 5.94204 5.99005 6.06504 6.15158 6.17202 6.25474 6.35207 6.35446 6.44757 6.54198 6.66750 6.72595 6.80914 6.89025 7.02988 7.32088 7.50485 7.70154 8.13255 8.16053 8.78795 9.05346 9.67725 10.44441 11.28936 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.026045 B = 0.005841 C = 0.005617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.813552 B = 4792.552374 C = 4984.065798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.084 4.084 3 C -0.149 4.149 4 C 0.544 3.456 5 O -0.559 6.559 6 N -0.586 5.586 7 C 0.113 3.887 8 C 0.168 3.832 9 H 0.118 0.882 10 C -0.136 4.136 11 C -0.125 4.125 12 C 0.133 3.867 13 H 0.077 0.923 14 C 0.096 3.904 15 N -0.584 5.584 16 C -0.228 4.228 17 H 0.076 0.924 18 C -0.002 4.002 19 N -0.913 5.913 20 Si 0.912 3.088 21 H -0.290 1.290 22 H -0.285 1.285 23 H -0.285 1.285 24 C -0.148 4.148 25 C -0.163 4.163 26 H 0.055 0.945 27 H 0.054 0.946 28 H 0.056 0.944 29 H 0.075 0.925 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.078 0.922 33 H 0.051 0.949 34 H 0.052 0.948 35 H 0.055 0.945 36 H 0.054 0.946 37 H 0.063 0.937 38 H 0.073 0.927 39 H 0.256 0.744 40 H 0.100 0.900 41 H 0.098 0.902 42 H 0.100 0.900 43 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.652 -4.286 12.713 13.904 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.121 4.121 3 C -0.153 4.153 4 C 0.330 3.670 5 O -0.438 6.438 6 N -0.317 5.317 7 C -0.010 4.010 8 C 0.061 3.939 9 H 0.136 0.864 10 C -0.176 4.176 11 C -0.164 4.164 12 C 0.024 3.976 13 H 0.095 0.905 14 C -0.029 4.029 15 N -0.305 5.305 16 C -0.356 4.356 17 H 0.094 0.906 18 C -0.200 4.200 19 N -0.559 5.559 20 Si 0.742 3.258 21 H -0.216 1.216 22 H -0.212 1.212 23 H -0.211 1.211 24 C -0.185 4.185 25 C -0.200 4.200 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.075 0.925 29 H 0.093 0.907 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.096 0.904 33 H 0.070 0.930 34 H 0.071 0.929 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.081 0.919 38 H 0.091 0.909 39 H 0.066 0.934 40 H 0.118 0.882 41 H 0.116 0.884 42 H 0.119 0.881 43 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges 3.125 -3.779 12.504 13.431 hybrid contribution -0.041 -0.361 -0.961 1.027 sum 3.084 -4.140 11.544 12.646 Atomic orbital electron populations 1.21705 0.95176 1.01243 1.02528 1.21163 0.96478 0.91915 1.02572 1.21457 1.01033 0.97196 0.95575 1.19371 0.80554 0.84055 0.82970 1.90630 1.37055 1.31984 1.84143 1.48323 1.50329 1.26391 1.06621 1.22419 0.99703 0.92804 0.86094 1.21806 0.89102 0.89166 0.93843 0.86415 1.22570 0.99145 0.96767 0.99084 1.22545 0.98722 0.96545 0.98616 1.21961 0.92759 0.94969 0.87877 0.90488 1.22731 0.93943 0.87186 0.99059 1.45149 1.66647 1.15111 1.03603 1.18939 1.18028 1.13438 0.85183 0.90649 1.24835 0.96684 0.99818 0.98635 1.69826 1.21954 1.31175 1.32924 0.86212 0.77184 0.77893 0.84488 1.21603 1.21183 1.21134 1.22962 1.01016 1.01635 0.92932 1.23120 0.90017 1.03667 1.03192 0.92568 0.92659 0.92517 0.90655 0.91374 0.91568 0.90400 0.93049 0.92902 0.92670 0.92762 0.91867 0.90928 0.93415 0.88191 0.88405 0.88134 0.88313 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.91 9.59 37.16 0.36 -1.55 16 2 C -0.08 -1.01 5.48 -26.73 -0.15 -1.16 16 3 C -0.15 -2.10 0.87 -155.66 -0.14 -2.23 16 4 C 0.54 10.11 6.11 -10.98 -0.07 10.04 16 5 O -0.56 -12.33 16.23 5.56 0.09 -12.24 16 6 N -0.59 -11.28 2.28 -170.88 -0.39 -11.67 16 7 C 0.11 2.52 5.79 -3.22 -0.02 2.50 16 8 C 0.17 3.83 3.11 -65.88 -0.20 3.63 16 9 H 0.12 3.05 6.35 -51.93 -0.33 2.72 16 10 C -0.14 -2.65 6.16 -25.47 -0.16 -2.81 16 11 C -0.13 -2.16 6.19 -25.25 -0.16 -2.31 16 12 C 0.13 2.52 4.32 -65.66 -0.28 2.23 16 13 H 0.08 1.37 8.14 -51.93 -0.42 0.95 16 14 C 0.10 1.67 4.83 -2.78 -0.01 1.66 16 15 N -0.58 -13.72 2.81 -152.83 -0.43 -14.15 16 16 C -0.23 -5.91 10.37 -15.06 -0.16 -6.07 16 17 H 0.08 1.90 7.84 -52.48 -0.41 1.48 16 18 C 0.00 -0.06 5.42 -17.43 -0.09 -0.16 16 19 N -0.91 -25.15 10.42 55.49 0.58 -24.57 16 20 Si 0.91 21.17 29.56 -169.99 -5.03 16.14 16 21 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 22 H -0.29 -6.59 7.11 56.52 0.40 -6.18 16 23 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 24 C -0.15 -1.82 9.76 -26.69 -0.26 -2.08 16 25 C -0.16 -1.91 9.12 -26.69 -0.24 -2.15 16 26 H 0.06 0.86 7.68 -51.93 -0.40 0.47 16 27 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.07 0.92 5.91 -51.93 -0.31 0.61 16 30 H 0.07 0.67 8.11 -51.92 -0.42 0.25 16 31 H 0.07 1.51 7.15 -51.93 -0.37 1.14 16 32 H 0.08 1.99 7.84 -51.93 -0.41 1.58 16 33 H 0.05 0.98 7.83 -51.93 -0.41 0.58 16 34 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 35 H 0.05 0.85 5.88 -51.93 -0.31 0.55 16 36 H 0.05 0.89 8.14 -51.93 -0.42 0.46 16 37 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 38 H 0.07 1.04 4.76 -51.93 -0.25 0.79 16 39 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 40 H 0.10 1.37 8.02 -51.93 -0.42 0.95 16 41 H 0.10 0.98 8.14 -51.93 -0.42 0.56 16 42 H 0.10 0.95 8.14 -51.93 -0.42 0.52 16 43 H 0.10 1.25 6.53 -51.93 -0.34 0.91 16 LS Contribution 327.08 15.07 4.93 4.93 Total: -1.00 -29.15 327.08 -8.71 -37.85 By element: Atomic # 1 Polarization: 11.04 SS G_CDS: -6.88 Total: 4.16 kcal Atomic # 6 Polarization: 1.12 SS G_CDS: -1.58 Total: -0.46 kcal Atomic # 7 Polarization: -50.14 SS G_CDS: -0.24 Total: -50.38 kcal Atomic # 8 Polarization: -12.33 SS G_CDS: 0.09 Total: -12.24 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.03 Total: 16.14 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -29.15 -8.71 -37.85 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029458136.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.561 kcal (2) G-P(sol) polarization free energy of solvation -29.148 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.705 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.853 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds