Wall clock time and date at job start Tue Mar 31 2020 00:06:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.47461 * 2 1 4 4 C 1.50699 * 115.54791 * 303.07189 * 3 2 1 5 5 O 1.21277 * 120.00201 * 112.89368 * 4 3 2 6 6 N 1.34780 * 119.99725 * 292.89725 * 4 3 2 7 7 C 1.47162 * 120.70604 * 184.56019 * 6 4 3 8 8 C 1.53886 * 108.03096 * 132.75386 * 7 6 4 9 9 H 1.09004 * 112.58239 * 182.22023 * 8 7 6 10 10 C 1.54132 * 107.71202 * 306.32646 * 8 7 6 11 11 C 1.54283 * 104.89181 * 89.40480 * 10 8 7 12 12 C 1.54548 * 104.84745 * 359.81150 * 11 10 8 13 13 H 1.09003 * 112.17929 * 146.40505 * 12 11 10 14 14 C 1.47973 * 120.64550 * 4.26128 * 6 4 3 15 15 N 1.48312 * 107.20759 * 58.36166 * 8 7 6 16 16 C 1.36929 * 128.07882 * 106.70116 * 15 8 7 17 17 H 1.08003 * 119.99881 * 164.95408 * 16 15 8 18 18 C 1.38813 * 119.99937 * 344.96112 * 16 15 8 19 19 N 1.31613 * 120.00164 * 351.00455 * 18 16 15 20 20 Si 1.86806 * 120.00055 * 171.00476 * 18 16 15 21 21 H 1.48493 * 109.47290 * 179.97438 * 20 18 16 22 22 H 1.48506 * 109.47075 * 300.00218 * 20 18 16 23 23 H 1.48504 * 109.46873 * 59.99802 * 20 18 16 24 24 C 1.53002 * 117.49935 * 88.74087 * 3 2 1 25 25 C 1.53000 * 117.49917 * 157.40185 * 3 2 1 26 26 H 1.09000 * 109.46737 * 65.37000 * 1 2 3 27 27 H 1.09000 * 109.47458 * 185.37369 * 1 2 3 28 28 H 1.09006 * 109.47246 * 305.37712 * 1 2 3 29 29 H 1.08994 * 109.47225 * 239.99527 * 2 1 3 30 30 H 1.09007 * 109.46684 * 119.99651 * 2 1 3 31 31 H 1.08996 * 109.75302 * 13.11983 * 7 6 4 32 32 H 1.09003 * 109.75168 * 252.38407 * 7 6 4 33 33 H 1.09001 * 110.49957 * 330.46962 * 10 8 7 34 34 H 1.08995 * 110.28031 * 208.23171 * 10 8 7 35 35 H 1.08994 * 110.36575 * 240.96925 * 11 10 8 36 36 H 1.08996 * 110.44969 * 118.69721 * 11 10 8 37 37 H 1.09000 * 109.69085 * 107.67644 * 14 6 4 38 38 H 1.09004 * 109.93088 * 346.86567 * 14 6 4 39 39 H 0.97002 * 120.00325 * 180.02562 * 19 18 16 40 40 H 1.08999 * 117.49336 * 215.00965 * 24 3 2 41 41 H 1.08999 * 117.49822 * 0.02562 * 24 3 2 42 42 H 1.08993 * 117.49893 * 359.97204 * 25 3 2 43 43 H 1.09000 * 117.49801 * 144.97480 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 1.5573 2.3026 -1.1394 5 8 0.8121 3.2345 -0.9222 6 7 1.9535 2.0361 -2.3997 7 6 1.5731 2.9233 -3.5105 8 6 2.8332 3.2057 -4.3475 9 1 2.6423 3.8912 -5.1732 10 6 3.9210 3.7361 -3.3930 11 6 4.6618 2.4768 -2.8973 12 6 3.9486 1.2970 -3.5960 13 1 4.6342 0.4828 -3.8312 14 6 2.7858 0.8484 -2.6935 15 7 3.3524 1.8972 -4.8142 16 6 3.2989 1.3689 -6.0763 17 1 3.9205 0.5245 -6.3351 18 6 2.4457 1.9188 -7.0233 19 7 1.5634 2.8274 -6.6654 20 14 2.5501 1.3692 -8.8056 21 1 1.5387 2.1013 -9.6094 22 1 3.9073 1.6588 -9.3343 23 1 2.2870 -0.0899 -8.8899 24 6 2.2475 2.1185 1.3568 25 6 3.4569 1.6908 0.5215 26 1 -0.3633 0.4283 -0.9342 27 1 -0.3634 -1.0231 0.0962 28 1 -0.3634 0.5950 0.8380 29 1 1.8933 -0.5139 -0.8899 30 1 1.8933 -0.5138 0.8901 31 1 1.1760 3.8584 -3.1157 32 1 0.8209 2.4356 -4.1305 33 1 3.4682 4.2645 -2.5541 34 1 4.6062 4.3929 -3.9288 35 1 4.5733 2.3861 -1.8148 36 1 5.7112 2.5124 -3.1898 37 1 2.1866 0.0987 -3.2103 38 1 3.1788 0.4315 -1.7662 39 1 0.9669 3.2114 -7.3270 40 1 2.0346 3.1853 1.4253 41 1 2.0210 1.5354 2.2495 42 1 4.0254 0.8267 0.8650 43 1 4.0399 2.4761 0.0402 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001029458136.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:06:22 Heat of formation + Delta-G solvation = 6.634335 kcal Electronic energy + Delta-G solvation = -23764.040914 eV Core-core repulsion = 20617.117442 eV Total energy + Delta-G solvation = -3146.923472 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.81273 -39.80565 -37.75195 -35.35724 -34.15244 -32.84990 -32.22372 -31.07206 -28.08223 -26.16145 -25.56107 -24.76080 -23.40417 -23.04653 -21.22546 -20.80167 -19.87058 -18.37081 -17.53206 -16.90133 -16.85180 -16.52674 -16.01541 -15.58396 -15.27241 -14.82160 -14.69294 -14.61388 -14.31636 -13.97047 -13.56326 -13.36053 -13.25343 -13.19063 -12.85401 -12.69403 -12.59997 -12.51650 -12.33086 -12.10363 -12.00387 -11.82450 -11.48660 -11.43912 -11.26938 -11.13819 -10.90422 -10.74061 -10.48913 -9.71090 -8.70650 -7.84457 -5.20510 1.48889 1.50542 1.56823 1.68004 2.10081 2.51404 2.82054 3.35017 3.45671 3.57644 3.72468 3.94065 4.03334 4.08979 4.14081 4.24522 4.30913 4.38488 4.46556 4.53586 4.56774 4.66634 4.75660 4.79068 4.85406 4.95730 4.98938 5.03931 5.06092 5.07341 5.15698 5.18519 5.19737 5.28301 5.31517 5.36953 5.40969 5.53713 5.57940 5.84109 6.22739 6.65171 7.05568 7.28266 7.73627 8.52407 9.27023 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.026045 B = 0.005841 C = 0.005617 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.813552 B = 4792.552374 C = 4984.065798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.078 4.078 3 C -0.169 4.169 4 C 0.540 3.460 5 O -0.603 6.603 6 N -0.588 5.588 7 C 0.129 3.871 8 C 0.167 3.833 9 H 0.077 0.923 10 C -0.128 4.128 11 C -0.113 4.113 12 C 0.126 3.874 13 H 0.097 0.903 14 C 0.104 3.896 15 N -0.604 5.604 16 C -0.231 4.231 17 H 0.084 0.916 18 C -0.059 4.059 19 N -0.941 5.941 20 Si 0.972 3.028 21 H -0.301 1.301 22 H -0.280 1.280 23 H -0.278 1.278 24 C -0.144 4.144 25 C -0.140 4.140 26 H 0.016 0.984 27 H 0.077 0.923 28 H 0.054 0.946 29 H 0.074 0.926 30 H 0.108 0.892 31 H 0.049 0.951 32 H 0.034 0.966 33 H 0.050 0.950 34 H 0.054 0.946 35 H 0.081 0.919 36 H 0.071 0.929 37 H 0.045 0.955 38 H 0.116 0.884 39 H 0.246 0.754 40 H 0.077 0.923 41 H 0.129 0.871 42 H 0.140 0.860 43 H 0.090 0.910 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.205 -6.650 15.228 17.737 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.116 4.116 3 C -0.172 4.172 4 C 0.329 3.671 5 O -0.485 6.485 6 N -0.318 5.318 7 C 0.004 3.996 8 C 0.059 3.941 9 H 0.095 0.905 10 C -0.167 4.167 11 C -0.151 4.151 12 C 0.019 3.981 13 H 0.115 0.885 14 C -0.020 4.020 15 N -0.326 5.326 16 C -0.359 4.359 17 H 0.102 0.898 18 C -0.253 4.253 19 N -0.589 5.589 20 Si 0.802 3.198 21 H -0.228 1.228 22 H -0.206 1.206 23 H -0.204 1.204 24 C -0.181 4.181 25 C -0.177 4.177 26 H 0.035 0.965 27 H 0.095 0.905 28 H 0.073 0.927 29 H 0.093 0.907 30 H 0.126 0.874 31 H 0.067 0.933 32 H 0.053 0.947 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.099 0.901 36 H 0.090 0.910 37 H 0.063 0.937 38 H 0.134 0.866 39 H 0.055 0.945 40 H 0.096 0.904 41 H 0.147 0.853 42 H 0.158 0.842 43 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 5.718 -6.179 15.051 17.246 hybrid contribution -0.884 0.404 -1.693 1.952 sum 4.834 -5.775 13.358 15.335 Atomic orbital electron populations 1.21708 0.96429 1.02210 1.00285 1.21208 0.95355 0.90608 1.04392 1.21435 1.03825 0.97561 0.94398 1.20294 0.79368 0.83854 0.83549 1.90603 1.38886 1.34219 1.84794 1.48335 1.50796 1.26464 1.06245 1.21892 0.98635 0.92276 0.86749 1.21597 0.90306 0.88853 0.93350 0.90505 1.22439 0.98143 0.98026 0.98137 1.22488 0.98899 0.93849 0.99890 1.22275 0.93350 0.96141 0.86301 0.88500 1.22753 0.92764 0.85872 1.00607 1.45341 1.66901 1.15839 1.04497 1.19306 1.17208 1.13013 0.86414 0.89806 1.25572 0.97035 1.00565 1.02126 1.70044 1.22906 1.32670 1.33270 0.85249 0.76788 0.77465 0.80331 1.22808 1.20574 1.20406 1.23064 1.01212 1.00790 0.93038 1.23297 0.88760 1.04507 1.01168 0.96517 0.90453 0.92682 0.90735 0.87412 0.93262 0.94736 0.93147 0.92719 0.90054 0.91031 0.93658 0.86582 0.94518 0.90400 0.85324 0.84245 0.89138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.55 9.59 71.98 0.69 -2.86 16 2 C -0.08 -1.58 5.48 30.60 0.17 -1.41 16 3 C -0.17 -4.22 0.87 -52.93 -0.05 -4.26 16 4 C 0.54 19.89 6.11 87.66 0.54 20.43 16 5 O -0.60 -27.45 16.23 -3.02 -0.05 -27.50 16 6 N -0.59 -22.75 2.28 -812.92 -1.85 -24.60 16 7 C 0.13 6.14 5.79 86.55 0.50 6.64 16 8 C 0.17 7.89 3.11 45.32 0.14 8.03 16 9 H 0.08 4.26 6.35 -2.39 -0.02 4.25 16 10 C -0.13 -4.92 6.16 31.41 0.19 -4.73 16 11 C -0.11 -3.53 6.19 31.56 0.20 -3.33 16 12 C 0.13 4.50 4.32 45.47 0.20 4.69 16 13 H 0.10 3.10 8.14 -2.39 -0.02 3.08 16 14 C 0.10 3.42 4.83 86.39 0.42 3.84 16 15 N -0.60 -28.53 2.81 -637.45 -1.79 -30.32 16 16 C -0.23 -12.05 10.37 84.04 0.87 -11.18 16 17 H 0.08 4.15 7.84 -2.91 -0.02 4.12 16 18 C -0.06 -3.22 5.42 84.86 0.46 -2.76 16 19 N -0.94 -54.75 10.42 21.65 0.23 -54.53 16 20 Si 0.97 44.51 29.56 68.60 2.03 46.54 16 21 H -0.30 -14.21 7.11 99.48 0.71 -13.50 16 22 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 23 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 24 C -0.14 -3.00 9.76 30.62 0.30 -2.70 16 25 C -0.14 -2.56 9.12 30.62 0.28 -2.28 16 26 H 0.02 0.50 7.68 -2.39 -0.02 0.48 16 27 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 28 H 0.05 1.31 8.14 -2.38 -0.02 1.29 16 29 H 0.07 1.52 5.91 -2.39 -0.01 1.50 16 30 H 0.11 1.41 8.11 -2.38 -0.02 1.39 16 31 H 0.05 2.44 7.15 -2.39 -0.02 2.42 16 32 H 0.03 1.91 7.84 -2.39 -0.02 1.89 16 33 H 0.05 1.92 7.83 -2.39 -0.02 1.90 16 34 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 35 H 0.08 2.14 5.88 -2.39 -0.01 2.13 16 36 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 37 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 38 H 0.12 2.83 4.76 -2.39 -0.01 2.82 16 39 H 0.25 14.19 8.31 -92.71 -0.77 13.42 16 40 H 0.08 2.00 8.02 -2.39 -0.02 1.98 16 41 H 0.13 1.91 8.14 -2.39 -0.02 1.89 16 42 H 0.14 1.55 8.14 -2.39 -0.02 1.53 16 43 H 0.09 1.85 6.53 -2.39 -0.02 1.83 16 Total: -1.00 -68.44 327.08 4.46 -63.99 By element: Atomic # 1 Polarization: 17.32 SS G_CDS: 0.99 Total: 18.31 kcal Atomic # 6 Polarization: 3.21 SS G_CDS: 4.90 Total: 8.11 kcal Atomic # 7 Polarization: -106.03 SS G_CDS: -3.41 Total: -109.45 kcal Atomic # 8 Polarization: -27.45 SS G_CDS: -0.05 Total: -27.50 kcal Atomic # 14 Polarization: 44.51 SS G_CDS: 2.03 Total: 46.54 kcal Total: -68.44 4.46 -63.99 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001029458136.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.623 kcal (2) G-P(sol) polarization free energy of solvation -68.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.455 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.988 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.634 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds