Wall clock time and date at job start Tue Mar 31 2020 00:34:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50696 * 120.00284 * 2 1 4 4 C 1.50702 * 119.99353 * 179.97438 * 2 1 3 5 5 C 1.52997 * 109.47209 * 0.02562 * 4 2 1 6 6 C 1.53005 * 109.47149 * 240.00053 * 4 2 1 7 7 C 1.50698 * 109.46842 * 120.00501 * 4 2 1 8 8 O 1.21285 * 120.00224 * 359.53299 * 7 4 2 9 9 N 1.34775 * 120.00171 * 179.53795 * 7 4 2 10 10 C 1.49774 * 127.89873 * 354.00992 * 9 7 4 11 11 C 1.56021 * 105.31636 * 182.15653 * 10 9 7 12 12 H 1.08999 * 116.24506 * 159.16365 * 11 10 9 13 13 C 1.57077 * 99.60874 * 33.13337 * 11 10 9 14 14 C 1.49284 * 126.94980 * 174.81187 * 9 7 4 15 15 H 1.09008 * 116.15106 * 15.81568 * 14 9 7 16 16 C 1.56014 * 104.09348 * 246.67355 * 14 9 7 17 17 N 1.47865 * 105.19478 * 287.86537 * 16 14 9 18 18 C 1.36938 * 126.94684 * 182.01614 * 17 16 14 19 19 H 1.08006 * 119.99876 * 185.55063 * 18 17 16 20 20 C 1.38809 * 119.99872 * 5.55018 * 18 17 16 21 21 N 1.31611 * 120.00229 * 6.38277 * 20 18 17 22 22 Si 1.86803 * 119.99858 * 186.37420 * 20 18 17 23 23 H 1.48503 * 109.46637 * 94.99445 * 22 20 18 24 24 H 1.48494 * 109.47356 * 214.99335 * 22 20 18 25 25 H 1.48502 * 109.47302 * 334.99482 * 22 20 18 26 26 H 1.07994 * 120.00847 * 180.02562 * 1 2 3 27 27 H 1.08011 * 119.99657 * 0.02562 * 1 2 3 28 28 H 1.09005 * 109.46706 * 269.99415 * 3 2 1 29 29 H 1.09002 * 109.47380 * 29.99313 * 3 2 1 30 30 H 1.08993 * 109.47002 * 149.99840 * 3 2 1 31 31 H 1.09003 * 109.47038 * 186.16801 * 5 4 2 32 32 H 1.08998 * 109.47397 * 306.16189 * 5 4 2 33 33 H 1.08997 * 109.47540 * 66.16874 * 5 4 2 34 34 H 1.09002 * 109.46768 * 290.66360 * 6 4 2 35 35 H 1.09005 * 109.46650 * 50.66080 * 6 4 2 36 36 H 1.08996 * 109.46994 * 170.66095 * 6 4 2 37 37 H 1.09002 * 109.93184 * 63.32210 * 10 9 7 38 38 H 1.09001 * 110.56928 * 301.31866 * 10 9 7 39 39 H 1.08997 * 112.36924 * 191.71526 * 13 11 10 40 40 H 1.09006 * 112.44832 * 64.29195 * 13 11 10 41 41 H 1.09003 * 110.31718 * 46.82832 * 16 14 9 42 42 H 1.09001 * 110.31502 * 168.90925 * 16 14 9 43 43 H 0.97001 * 120.00341 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 2.0634 -1.3052 0.0006 5 6 1.0690 -2.4680 0.0005 6 6 2.9430 -1.3858 1.2499 7 6 2.9298 -1.3856 -1.2298 8 8 2.9287 -0.4766 -2.0328 9 7 3.7060 -2.4675 -1.4380 10 6 3.9384 -3.6243 -0.5154 11 6 4.9622 -4.5412 -1.2540 12 1 5.5236 -5.2369 -0.6303 13 6 5.7972 -3.4463 -2.0097 14 6 4.5359 -2.7579 -2.6444 15 1 4.7247 -1.9166 -3.3115 16 6 3.8525 -4.0059 -3.2843 17 7 4.1772 -5.1311 -2.3815 18 6 3.8282 -6.4450 -2.5454 19 1 4.0483 -7.1631 -1.7692 20 6 3.1917 -6.8541 -3.7092 21 7 3.0359 -6.0089 -4.7060 22 14 2.5564 -8.6042 -3.8606 23 1 1.1209 -8.6441 -3.4825 24 1 2.7120 -9.0678 -5.2627 25 1 3.3312 -9.4920 -2.9569 26 1 -0.5401 -0.9352 0.0004 27 1 -0.5400 0.9354 -0.0004 28 1 2.2453 1.6196 -1.0277 29 1 1.4745 2.0648 0.5137 30 1 3.0159 1.1746 0.5138 31 1 1.6094 -3.4081 0.1113 32 1 0.3717 -2.3499 0.8298 33 1 0.5177 -2.4746 -0.9397 34 1 3.7545 -0.6625 1.1701 35 1 2.3426 -1.1625 2.1319 36 1 3.3583 -2.3897 1.3376 37 1 3.0037 -4.1592 -0.3474 38 1 4.3530 -3.2809 0.4324 39 1 6.4585 -3.8752 -2.7626 40 1 6.3311 -2.7851 -1.3271 41 1 2.7733 -3.8615 -3.3360 42 1 4.2571 -4.1903 -4.2794 43 1 2.5914 -6.2948 -5.5194 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032558066.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:34:09 Heat of formation + Delta-G solvation = 44.729274 kcal Electronic energy + Delta-G solvation = -23327.426402 eV Core-core repulsion = 20182.154851 eV Total energy + Delta-G solvation = -3145.271551 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.39295 -38.54444 -36.20450 -33.71361 -32.33503 -30.84328 -28.89312 -28.57500 -28.37954 -25.93811 -25.32295 -24.29120 -22.67638 -20.99220 -19.78484 -18.77655 -17.72438 -16.78137 -16.18155 -15.75769 -15.13165 -14.86620 -14.57249 -14.22177 -14.04013 -13.40508 -13.17489 -12.94034 -12.76677 -12.30729 -12.25553 -12.09196 -11.91590 -11.75964 -11.50527 -11.35666 -11.26027 -10.95111 -10.90439 -10.82076 -10.70275 -10.57191 -10.50984 -10.17919 -10.08461 -9.64661 -9.37279 -8.85040 -8.68834 -7.96566 -6.92902 -5.76851 -3.13965 2.32510 3.10896 3.35847 3.40712 3.43583 3.46117 4.40089 4.58290 4.76277 4.96016 5.07865 5.17792 5.19421 5.32663 5.37279 5.54720 5.58209 5.61194 5.67601 5.72378 5.73739 5.79735 5.82152 5.85499 5.94341 6.06380 6.09928 6.20052 6.23452 6.29189 6.39050 6.41173 6.52715 6.59328 6.68226 6.76746 6.98963 7.38792 7.50292 7.70018 8.09082 8.14110 8.65433 9.07989 9.69585 10.39308 11.33039 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.023890 B = 0.005411 C = 0.005079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.758250 B = 5173.139355 C = 5511.352165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.086 4.086 3 C -0.113 4.113 4 C -0.044 4.044 5 C -0.147 4.147 6 C -0.144 4.144 7 C 0.542 3.458 8 O -0.552 6.552 9 N -0.607 5.607 10 C 0.079 3.921 11 C 0.138 3.862 12 H 0.106 0.894 13 C -0.151 4.151 14 C 0.097 3.903 15 H 0.111 0.889 16 C 0.170 3.830 17 N -0.595 5.595 18 C -0.232 4.232 19 H 0.080 0.920 20 C -0.005 4.005 21 N -0.917 5.917 22 Si 0.911 3.089 23 H -0.290 1.290 24 H -0.291 1.291 25 H -0.280 1.280 26 H 0.103 0.897 27 H 0.096 0.904 28 H 0.078 0.922 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.073 0.927 32 H 0.066 0.934 33 H 0.062 0.938 34 H 0.058 0.942 35 H 0.064 0.936 36 H 0.073 0.927 37 H 0.076 0.924 38 H 0.061 0.939 39 H 0.084 0.916 40 H 0.064 0.936 41 H 0.035 0.965 42 H 0.068 0.932 43 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.563 8.725 11.854 14.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.087 4.087 3 C -0.170 4.170 4 C -0.047 4.047 5 C -0.204 4.204 6 C -0.201 4.201 7 C 0.331 3.669 8 O -0.430 6.430 9 N -0.341 5.341 10 C -0.046 4.046 11 C 0.029 3.971 12 H 0.124 0.876 13 C -0.190 4.190 14 C -0.005 4.005 15 H 0.128 0.872 16 C 0.045 3.955 17 N -0.319 5.319 18 C -0.360 4.360 19 H 0.098 0.902 20 C -0.202 4.202 21 N -0.564 5.564 22 Si 0.742 3.258 23 H -0.217 1.217 24 H -0.217 1.217 25 H -0.205 1.205 26 H 0.121 0.879 27 H 0.114 0.886 28 H 0.097 0.903 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.092 0.908 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.077 0.923 35 H 0.083 0.917 36 H 0.092 0.908 37 H 0.095 0.905 38 H 0.079 0.921 39 H 0.102 0.898 40 H 0.082 0.918 41 H 0.053 0.947 42 H 0.086 0.914 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 0.366 9.095 11.241 14.464 hybrid contribution -0.555 -0.932 -0.217 1.106 sum -0.189 8.164 11.023 13.718 Atomic orbital electron populations 1.23761 0.95191 1.01980 1.03609 1.21271 0.94864 0.94204 0.98314 1.20819 0.99380 0.93868 1.02901 1.19754 0.95550 0.94878 0.94490 1.22036 0.98661 0.97175 1.02549 1.22010 0.99206 1.03135 0.95761 1.19870 0.79465 0.80653 0.86951 1.90634 1.67216 1.37506 1.47650 1.49581 1.44714 1.19932 1.19833 1.23930 1.01329 0.87258 0.92044 1.23221 0.90848 0.92091 0.90906 0.87594 1.24148 0.96264 0.98343 1.00282 1.24279 0.90744 0.97865 0.87634 0.87158 1.21980 0.97243 0.82527 0.93787 1.45269 1.60957 1.03950 1.21741 1.19046 1.32884 0.83006 1.01023 0.90189 1.24819 1.01467 0.98015 0.95899 1.69907 1.47256 1.33967 1.05239 0.86116 0.78803 0.83859 0.77053 1.21686 1.21746 1.20546 0.87863 0.88567 0.90324 0.92557 0.92438 0.90802 0.91532 0.91926 0.92274 0.91707 0.90783 0.90547 0.92131 0.89787 0.91775 0.94727 0.91368 0.93602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.68 13.30 29.01 0.39 -2.30 16 2 C -0.09 -1.21 4.40 -101.07 -0.44 -1.66 16 3 C -0.11 -1.48 9.13 36.00 0.33 -1.15 16 4 C -0.04 -0.64 0.60 -156.81 -0.09 -0.73 16 5 C -0.15 -2.09 6.94 37.16 0.26 -1.83 16 6 C -0.14 -1.71 7.73 37.16 0.29 -1.42 16 7 C 0.54 9.96 6.48 -10.99 -0.07 9.89 16 8 O -0.55 -11.75 15.06 5.55 0.08 -11.66 16 9 N -0.61 -11.04 2.98 -155.23 -0.46 -11.51 16 10 C 0.08 1.29 4.69 -0.60 0.00 1.28 16 11 C 0.14 2.50 5.54 -62.43 -0.35 2.15 16 12 H 0.11 1.71 8.14 -51.93 -0.42 1.28 16 13 C -0.15 -2.55 6.82 -22.30 -0.15 -2.70 16 14 C 0.10 1.90 5.20 -62.56 -0.33 1.57 16 15 H 0.11 2.14 8.03 -51.92 -0.42 1.72 16 16 C 0.17 4.05 4.84 -1.68 -0.01 4.04 16 17 N -0.59 -14.04 3.03 -156.18 -0.47 -14.51 16 18 C -0.23 -6.06 10.37 -15.06 -0.16 -6.22 16 19 H 0.08 1.99 7.84 -52.48 -0.41 1.58 16 20 C 0.00 -0.14 5.46 -17.43 -0.10 -0.23 16 21 N -0.92 -26.52 10.65 55.49 0.59 -25.93 16 22 Si 0.91 21.51 29.56 -169.99 -5.02 16.48 16 23 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 24 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 25 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 26 H 0.10 1.27 5.68 -52.49 -0.30 0.98 16 27 H 0.10 1.09 8.04 -52.48 -0.42 0.67 16 28 H 0.08 1.18 7.38 -51.93 -0.38 0.79 16 29 H 0.06 0.61 8.06 -51.93 -0.42 0.19 16 30 H 0.06 0.71 6.85 -51.93 -0.36 0.36 16 31 H 0.07 1.08 5.10 -51.93 -0.26 0.82 16 32 H 0.07 0.78 7.10 -51.93 -0.37 0.41 16 33 H 0.06 1.00 7.85 -51.93 -0.41 0.59 16 34 H 0.06 0.70 7.18 -51.93 -0.37 0.33 16 35 H 0.06 0.66 8.11 -51.93 -0.42 0.24 16 36 H 0.07 0.84 4.85 -51.93 -0.25 0.59 16 37 H 0.08 1.34 5.78 -51.93 -0.30 1.04 16 38 H 0.06 0.81 5.91 -51.93 -0.31 0.50 16 39 H 0.08 1.47 8.14 -51.93 -0.42 1.05 16 40 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.03 0.95 8.05 -51.93 -0.42 0.53 16 42 H 0.07 1.82 7.01 -51.93 -0.36 1.45 16 43 H 0.25 7.19 8.31 -40.82 -0.34 6.85 16 LS Contribution 325.66 15.07 4.91 4.91 Total: -1.00 -30.71 325.66 -7.40 -38.11 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: -6.59 Total: 3.42 kcal Atomic # 6 Polarization: 1.13 SS G_CDS: -0.44 Total: 0.69 kcal Atomic # 7 Polarization: -51.61 SS G_CDS: -0.35 Total: -51.95 kcal Atomic # 8 Polarization: -11.75 SS G_CDS: 0.08 Total: -11.66 kcal Atomic # 14 Polarization: 21.51 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.71 -7.40 -38.11 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032558066.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.836 kcal (2) G-P(sol) polarization free energy of solvation -30.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.129 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.400 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.107 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds