Wall clock time and date at job start Tue Mar 31 2020 00:34:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31001 * 1 3 3 C 1.50696 * 120.00284 * 2 1 4 4 C 1.50702 * 119.99353 * 179.97438 * 2 1 3 5 5 C 1.52997 * 109.47209 * 0.02562 * 4 2 1 6 6 C 1.53005 * 109.47149 * 240.00053 * 4 2 1 7 7 C 1.50698 * 109.46842 * 120.00501 * 4 2 1 8 8 O 1.21285 * 120.00224 * 359.53299 * 7 4 2 9 9 N 1.34775 * 120.00171 * 179.53795 * 7 4 2 10 10 C 1.49774 * 127.89873 * 354.00992 * 9 7 4 11 11 C 1.56021 * 105.31636 * 182.15653 * 10 9 7 12 12 H 1.08999 * 116.24506 * 159.16365 * 11 10 9 13 13 C 1.57077 * 99.60874 * 33.13337 * 11 10 9 14 14 C 1.49284 * 126.94980 * 174.81187 * 9 7 4 15 15 H 1.09008 * 116.15106 * 15.81568 * 14 9 7 16 16 C 1.56014 * 104.09348 * 246.67355 * 14 9 7 17 17 N 1.47865 * 105.19478 * 287.86537 * 16 14 9 18 18 C 1.36938 * 126.94684 * 182.01614 * 17 16 14 19 19 H 1.08006 * 119.99876 * 185.55063 * 18 17 16 20 20 C 1.38809 * 119.99872 * 5.55018 * 18 17 16 21 21 N 1.31611 * 120.00229 * 6.38277 * 20 18 17 22 22 Si 1.86803 * 119.99858 * 186.37420 * 20 18 17 23 23 H 1.48503 * 109.46637 * 94.99445 * 22 20 18 24 24 H 1.48494 * 109.47356 * 214.99335 * 22 20 18 25 25 H 1.48502 * 109.47302 * 334.99482 * 22 20 18 26 26 H 1.07994 * 120.00847 * 180.02562 * 1 2 3 27 27 H 1.08011 * 119.99657 * 0.02562 * 1 2 3 28 28 H 1.09005 * 109.46706 * 269.99415 * 3 2 1 29 29 H 1.09002 * 109.47380 * 29.99313 * 3 2 1 30 30 H 1.08993 * 109.47002 * 149.99840 * 3 2 1 31 31 H 1.09003 * 109.47038 * 186.16801 * 5 4 2 32 32 H 1.08998 * 109.47397 * 306.16189 * 5 4 2 33 33 H 1.08997 * 109.47540 * 66.16874 * 5 4 2 34 34 H 1.09002 * 109.46768 * 290.66360 * 6 4 2 35 35 H 1.09005 * 109.46650 * 50.66080 * 6 4 2 36 36 H 1.08996 * 109.46994 * 170.66095 * 6 4 2 37 37 H 1.09002 * 109.93184 * 63.32210 * 10 9 7 38 38 H 1.09001 * 110.56928 * 301.31866 * 10 9 7 39 39 H 1.08997 * 112.36924 * 191.71526 * 13 11 10 40 40 H 1.09006 * 112.44832 * 64.29195 * 13 11 10 41 41 H 1.09003 * 110.31718 * 46.82832 * 16 14 9 42 42 H 1.09001 * 110.31502 * 168.90925 * 16 14 9 43 43 H 0.97001 * 120.00341 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 6 2.0634 -1.3052 0.0006 5 6 1.0690 -2.4680 0.0005 6 6 2.9430 -1.3858 1.2499 7 6 2.9298 -1.3856 -1.2298 8 8 2.9287 -0.4766 -2.0328 9 7 3.7060 -2.4675 -1.4380 10 6 3.9384 -3.6243 -0.5154 11 6 4.9622 -4.5412 -1.2540 12 1 5.5236 -5.2369 -0.6303 13 6 5.7972 -3.4463 -2.0097 14 6 4.5359 -2.7579 -2.6444 15 1 4.7247 -1.9166 -3.3115 16 6 3.8525 -4.0059 -3.2843 17 7 4.1772 -5.1311 -2.3815 18 6 3.8282 -6.4450 -2.5454 19 1 4.0483 -7.1631 -1.7692 20 6 3.1917 -6.8541 -3.7092 21 7 3.0359 -6.0089 -4.7060 22 14 2.5564 -8.6042 -3.8606 23 1 1.1209 -8.6441 -3.4825 24 1 2.7120 -9.0678 -5.2627 25 1 3.3312 -9.4920 -2.9569 26 1 -0.5401 -0.9352 0.0004 27 1 -0.5400 0.9354 -0.0004 28 1 2.2453 1.6196 -1.0277 29 1 1.4745 2.0648 0.5137 30 1 3.0159 1.1746 0.5138 31 1 1.6094 -3.4081 0.1113 32 1 0.3717 -2.3499 0.8298 33 1 0.5177 -2.4746 -0.9397 34 1 3.7545 -0.6625 1.1701 35 1 2.3426 -1.1625 2.1319 36 1 3.3583 -2.3897 1.3376 37 1 3.0037 -4.1592 -0.3474 38 1 4.3530 -3.2809 0.4324 39 1 6.4585 -3.8752 -2.7626 40 1 6.3311 -2.7851 -1.3271 41 1 2.7733 -3.8615 -3.3360 42 1 4.2571 -4.1903 -4.2794 43 1 2.5914 -6.2948 -5.5194 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032558066.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:34:08 Heat of formation + Delta-G solvation = 26.398423 kcal Electronic energy + Delta-G solvation = -23328.221288 eV Core-core repulsion = 20182.154851 eV Total energy + Delta-G solvation = -3146.066437 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.82177 -39.98278 -37.51278 -35.47155 -33.78578 -32.34191 -30.45217 -30.26619 -29.42476 -27.03030 -26.94065 -25.86865 -24.08891 -22.44995 -21.33890 -20.34173 -19.15027 -18.37266 -17.63993 -17.24884 -16.55986 -16.25043 -16.01258 -15.77868 -15.43803 -14.98739 -14.51184 -14.16064 -13.89297 -13.75511 -13.58459 -13.46739 -13.21842 -13.09496 -12.93936 -12.89912 -12.68935 -12.62833 -12.44834 -12.21627 -12.12554 -12.05599 -11.96403 -11.74897 -11.53950 -11.48279 -10.84946 -10.62586 -9.92996 -9.48371 -8.89070 -7.81890 -5.20415 1.25073 1.47146 1.48171 1.57190 1.69359 2.08261 2.48824 3.31356 3.37688 3.48154 3.63284 3.78753 3.91315 3.97019 4.03305 4.08597 4.22325 4.32850 4.46661 4.55466 4.66662 4.69310 4.73571 4.76218 4.86153 4.87149 4.91828 5.00398 5.02206 5.03905 5.13712 5.17068 5.18655 5.28700 5.36163 5.44229 5.54182 5.65495 5.71528 5.95570 6.11337 6.70909 7.02913 7.21306 7.71698 8.42949 9.26917 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.023890 B = 0.005411 C = 0.005079 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1171.758250 B = 5173.139355 C = 5511.352165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.109 4.109 3 C -0.108 4.108 4 C -0.039 4.039 5 C -0.143 4.143 6 C -0.138 4.138 7 C 0.533 3.467 8 O -0.589 6.589 9 N -0.609 5.609 10 C 0.086 3.914 11 C 0.133 3.867 12 H 0.138 0.862 13 C -0.129 4.129 14 C 0.098 3.902 15 H 0.105 0.895 16 C 0.185 3.815 17 N -0.613 5.613 18 C -0.227 4.227 19 H 0.097 0.903 20 C -0.071 4.071 21 N -0.957 5.957 22 Si 0.974 3.026 23 H -0.294 1.294 24 H -0.302 1.302 25 H -0.259 1.259 26 H 0.106 0.894 27 H 0.112 0.888 28 H 0.052 0.948 29 H 0.078 0.922 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.095 0.905 33 H 0.033 0.967 34 H 0.060 0.940 35 H 0.087 0.913 36 H 0.081 0.919 37 H 0.065 0.935 38 H 0.107 0.893 39 H 0.077 0.923 40 H 0.102 0.898 41 H -0.016 1.016 42 H 0.028 0.972 43 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.333 8.723 15.474 17.813 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.238 4.238 2 C -0.110 4.110 3 C -0.165 4.165 4 C -0.042 4.042 5 C -0.200 4.200 6 C -0.195 4.195 7 C 0.323 3.677 8 O -0.470 6.470 9 N -0.342 5.342 10 C -0.037 4.037 11 C 0.027 3.973 12 H 0.155 0.845 13 C -0.169 4.169 14 C -0.005 4.005 15 H 0.123 0.877 16 C 0.058 3.942 17 N -0.338 5.338 18 C -0.356 4.356 19 H 0.115 0.885 20 C -0.264 4.264 21 N -0.606 5.606 22 Si 0.803 3.197 23 H -0.222 1.222 24 H -0.230 1.230 25 H -0.183 1.183 26 H 0.124 0.876 27 H 0.130 0.870 28 H 0.070 0.930 29 H 0.097 0.903 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.113 0.887 33 H 0.052 0.948 34 H 0.079 0.921 35 H 0.106 0.894 36 H 0.100 0.900 37 H 0.083 0.917 38 H 0.125 0.875 39 H 0.095 0.905 40 H 0.120 0.880 41 H 0.002 0.998 42 H 0.046 0.954 43 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges 1.167 9.084 14.933 17.518 hybrid contribution -0.821 -0.889 -1.338 1.804 sum 0.346 8.195 13.595 15.878 Atomic orbital electron populations 1.23974 0.94974 1.02954 1.01890 1.21428 0.95419 0.94331 0.99793 1.20773 1.00075 0.94063 1.01589 1.19790 0.95331 0.95327 0.93771 1.22010 0.98869 0.96905 1.02170 1.22004 0.99062 1.03656 0.94810 1.20713 0.79167 0.79957 0.87847 1.90613 1.68180 1.38944 1.49265 1.49661 1.44599 1.20515 1.19443 1.23895 1.00490 0.86232 0.93044 1.23660 0.91052 0.92771 0.89863 0.84463 1.24046 0.94831 0.97797 1.00178 1.24074 0.92174 0.95905 0.88390 0.87660 1.21555 0.94314 0.85273 0.93023 1.45509 1.61713 1.03208 1.23336 1.19547 1.30916 0.84429 1.00698 0.88547 1.25646 1.02938 1.01648 0.96124 1.70152 1.49027 1.35779 1.05645 0.85108 0.77940 0.80076 0.76538 1.22205 1.22950 1.18271 0.87612 0.86953 0.92965 0.90270 0.91902 0.91239 0.88656 0.94772 0.92054 0.89448 0.90009 0.91706 0.87487 0.90450 0.87990 0.99782 0.95400 0.94797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -4.79 13.30 67.78 0.90 -3.89 16 2 C -0.11 -2.89 4.40 -16.49 -0.07 -2.96 16 3 C -0.11 -2.66 9.13 71.23 0.65 -2.01 16 4 C -0.04 -1.07 0.60 -53.67 -0.03 -1.10 16 5 C -0.14 -3.84 6.94 71.98 0.50 -3.34 16 6 C -0.14 -2.75 7.73 71.98 0.56 -2.20 16 7 C 0.53 19.32 6.48 87.66 0.57 19.88 16 8 O -0.59 -25.55 15.06 -3.05 -0.05 -25.59 16 9 N -0.61 -21.62 2.98 -763.41 -2.28 -23.90 16 10 C 0.09 2.57 4.69 86.79 0.41 2.98 16 11 C 0.13 4.44 5.54 46.89 0.26 4.70 16 12 H 0.14 3.78 8.14 -2.39 -0.02 3.76 16 13 C -0.13 -4.07 6.82 33.46 0.23 -3.84 16 14 C 0.10 3.86 5.20 46.93 0.24 4.10 16 15 H 0.11 4.22 8.03 -2.38 -0.02 4.20 16 16 C 0.18 9.25 4.84 87.16 0.42 9.67 16 17 N -0.61 -28.97 3.03 -648.02 -1.96 -30.93 16 18 C -0.23 -11.85 10.37 84.03 0.87 -10.97 16 19 H 0.10 4.62 7.84 -2.91 -0.02 4.59 16 20 C -0.07 -3.96 5.46 84.86 0.46 -3.49 16 21 N -0.96 -58.28 10.65 21.65 0.23 -58.05 16 22 Si 0.97 44.96 29.56 68.60 2.03 46.99 16 23 H -0.29 -13.67 7.11 99.48 0.71 -12.96 16 24 H -0.30 -14.36 7.11 99.48 0.71 -13.66 16 25 H -0.26 -10.89 7.11 99.48 0.71 -10.18 16 26 H 0.11 2.42 5.68 -2.91 -0.02 2.41 16 27 H 0.11 2.27 8.04 -2.90 -0.02 2.25 16 28 H 0.05 1.56 7.38 -2.38 -0.02 1.54 16 29 H 0.08 1.52 8.06 -2.39 -0.02 1.50 16 30 H 0.06 1.43 6.85 -2.39 -0.02 1.42 16 31 H 0.07 1.92 5.10 -2.39 -0.01 1.91 16 32 H 0.09 1.99 7.10 -2.39 -0.02 1.97 16 33 H 0.03 1.09 7.85 -2.39 -0.02 1.07 16 34 H 0.06 1.22 7.18 -2.39 -0.02 1.20 16 35 H 0.09 1.38 8.11 -2.38 -0.02 1.37 16 36 H 0.08 1.47 4.85 -2.39 -0.01 1.45 16 37 H 0.06 2.14 5.78 -2.39 -0.01 2.13 16 38 H 0.11 2.29 5.91 -2.39 -0.01 2.27 16 39 H 0.08 2.58 8.14 -2.39 -0.02 2.56 16 40 H 0.10 2.53 8.14 -2.38 -0.02 2.51 16 41 H -0.02 -0.95 8.05 -2.39 -0.02 -0.96 16 42 H 0.03 1.60 7.01 -2.39 -0.02 1.59 16 43 H 0.24 14.61 8.31 -92.71 -0.77 13.84 16 Total: -1.00 -71.14 325.66 4.93 -66.20 By element: Atomic # 1 Polarization: 16.77 SS G_CDS: 1.00 Total: 17.76 kcal Atomic # 6 Polarization: 1.55 SS G_CDS: 5.97 Total: 7.52 kcal Atomic # 7 Polarization: -108.87 SS G_CDS: -4.01 Total: -112.88 kcal Atomic # 8 Polarization: -25.55 SS G_CDS: -0.05 Total: -25.59 kcal Atomic # 14 Polarization: 44.96 SS G_CDS: 2.03 Total: 46.99 kcal Total: -71.14 4.93 -66.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032558066.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.599 kcal (2) G-P(sol) polarization free energy of solvation -71.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.935 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.201 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds