Wall clock time and date at job start Tue Mar 31 2020 00:07:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47573 * 2 1 4 4 C 1.50700 * 112.84904 * 304.49688 * 3 2 1 5 5 O 1.21286 * 119.99870 * 113.20198 * 4 3 2 6 6 N 1.34769 * 119.99999 * 293.20784 * 4 3 2 7 7 C 1.47871 * 126.94594 * 354.91158 * 6 4 3 8 8 C 1.56021 * 105.10355 * 181.98050 * 7 6 4 9 9 H 1.08997 * 116.24703 * 158.83625 * 8 7 6 10 10 C 1.57085 * 99.60761 * 32.80686 * 8 7 6 11 11 C 1.49293 * 126.94198 * 174.60120 * 6 4 3 12 12 H 1.08998 * 116.15501 * 16.72186 * 11 6 4 13 13 C 1.56022 * 104.09096 * 246.71582 * 11 6 4 14 14 N 1.47357 * 105.15178 * 288.60761 * 13 11 6 15 15 C 1.36938 * 126.79327 * 182.05927 * 14 13 11 16 16 H 1.07994 * 119.99831 * 180.28829 * 15 14 13 17 17 C 1.38809 * 119.99944 * 0.28725 * 15 14 13 18 18 N 1.31619 * 120.00028 * 0.02562 * 17 15 14 19 19 Si 1.86793 * 120.00067 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47228 * 60.00215 * 19 17 15 21 21 H 1.48498 * 109.47120 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.47293 * 300.00203 * 19 17 15 23 23 C 1.53785 * 113.61553 * 75.68945 * 3 2 1 24 24 C 1.53956 * 87.01889 * 89.23287 * 23 3 2 25 25 C 1.53773 * 113.61677 * 173.29993 * 3 2 1 26 26 H 1.08997 * 109.47421 * 295.50850 * 1 2 3 27 27 H 1.09004 * 109.46758 * 55.50614 * 1 2 3 28 28 H 1.08997 * 109.47461 * 175.50685 * 1 2 3 29 29 H 1.09002 * 109.47025 * 239.99428 * 2 1 3 30 30 H 1.09006 * 109.46789 * 120.00401 * 2 1 3 31 31 H 1.08989 * 110.31487 * 300.88997 * 7 6 4 32 32 H 1.09003 * 110.31043 * 63.07635 * 7 6 4 33 33 H 1.09000 * 112.36479 * 64.27237 * 10 8 7 34 34 H 1.09000 * 112.36720 * 191.62186 * 10 8 7 35 35 H 1.09002 * 110.31322 * 47.68134 * 13 11 6 36 36 H 1.09003 * 110.31494 * 169.86395 * 13 11 6 37 37 H 0.96993 * 120.00391 * 180.02562 * 18 17 15 38 38 H 1.08998 * 113.61718 * 203.74923 * 23 3 2 39 39 H 1.08998 * 113.61539 * 334.65640 * 23 3 2 40 40 H 1.09004 * 113.53322 * 270.81773 * 24 23 3 41 41 H 1.08997 * 113.74930 * 139.94404 * 24 23 3 42 42 H 1.09000 * 113.61413 * 25.35041 * 25 3 2 43 43 H 1.09007 * 113.61648 * 156.16901 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 1.4937 2.2563 -1.1445 5 8 0.7366 3.1783 -0.9259 6 7 1.8461 1.9596 -2.4110 7 6 2.8309 0.9455 -2.8452 8 6 2.8780 1.0643 -4.4002 9 1 3.7720 0.6741 -4.8865 10 6 2.6122 2.6049 -4.5536 11 6 1.3166 2.5840 -3.6595 12 1 0.7929 3.5322 -3.5377 13 6 0.5334 1.4299 -4.3587 14 7 1.5691 0.5026 -4.8475 15 6 1.3686 -0.6469 -5.5642 16 1 2.2125 -1.2504 -5.8641 17 6 0.0806 -1.0365 -5.9050 18 7 -0.9478 -0.3008 -5.5399 19 14 -0.1929 -2.6042 -6.8831 20 1 0.3426 -3.7619 -6.1227 21 1 -1.6471 -2.7953 -7.1155 22 1 0.5083 -2.5021 -8.1882 23 6 1.9171 2.1393 1.3653 24 6 3.3197 1.5893 1.6822 25 6 3.5647 1.5566 0.1644 26 1 -0.3634 0.4425 0.9274 27 1 -0.3633 0.5820 -0.8470 28 1 -0.3634 -1.0245 -0.0805 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 3.8103 1.1625 -2.4192 32 1 2.5019 -0.0513 -2.5516 33 1 3.4094 3.2085 -4.1199 34 1 2.4008 2.8886 -5.5846 35 1 -0.1196 0.9287 -3.6443 36 1 -0.0472 1.8191 -5.1951 37 1 -1.8478 -0.5731 -5.7777 38 1 1.8794 3.2266 1.2988 39 1 1.1317 1.7254 1.9977 40 1 3.3060 0.6018 2.1435 41 1 3.9586 2.2954 2.2126 42 1 4.1075 0.6731 -0.1714 43 1 3.9785 2.4838 -0.2324 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032568751.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:07:07 Heat of formation + Delta-G solvation = 35.720737 kcal Electronic energy + Delta-G solvation = -23535.366756 eV Core-core repulsion = 20389.704565 eV Total energy + Delta-G solvation = -3145.662191 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.67181 -39.05601 -36.86476 -33.61284 -32.32564 -31.36236 -29.09017 -28.53768 -26.16764 -25.59283 -25.14411 -23.55979 -22.53296 -20.94310 -19.89250 -18.89382 -18.14949 -16.97564 -16.17675 -15.90399 -15.41109 -14.94042 -14.76512 -14.07169 -13.87875 -13.61108 -13.27362 -12.67249 -12.51766 -12.32467 -12.23847 -11.90158 -11.69802 -11.58582 -11.34212 -11.31105 -11.13618 -10.98115 -10.83261 -10.80582 -10.66962 -10.53066 -10.29167 -10.23035 -10.10883 -10.02971 -9.63454 -9.11464 -8.67385 -7.91507 -6.92031 -5.76527 -3.11244 3.12192 3.36800 3.41198 3.43229 3.49792 4.41738 4.52488 4.56147 4.73849 4.81155 4.97360 5.20859 5.21814 5.39547 5.40502 5.50624 5.57412 5.59453 5.66529 5.72604 5.79101 5.80670 5.85710 5.90436 5.96095 5.97981 6.12319 6.19973 6.25793 6.31227 6.39577 6.43632 6.45936 6.57275 6.58487 6.61516 6.76884 7.43274 7.51343 7.72421 8.10891 8.20473 8.70534 9.11106 9.71401 10.40719 11.35097 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.022649 B = 0.005867 C = 0.005447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.979571 B = 4770.930087 C = 5139.036247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.095 4.095 3 C -0.098 4.098 4 C 0.546 3.454 5 O -0.558 6.558 6 N -0.603 5.603 7 C 0.085 3.915 8 C 0.139 3.861 9 H 0.105 0.895 10 C -0.152 4.152 11 C 0.096 3.904 12 H 0.111 0.889 13 C 0.177 3.823 14 N -0.595 5.595 15 C -0.232 4.232 16 H 0.079 0.921 17 C -0.005 4.005 18 N -0.919 5.919 19 Si 0.912 3.088 20 H -0.285 1.285 21 H -0.291 1.291 22 H -0.285 1.285 23 C -0.112 4.112 24 C -0.140 4.140 25 C -0.124 4.124 26 H 0.052 0.948 27 H 0.059 0.941 28 H 0.056 0.944 29 H 0.075 0.925 30 H 0.068 0.932 31 H 0.053 0.947 32 H 0.072 0.928 33 H 0.064 0.936 34 H 0.082 0.918 35 H 0.046 0.954 36 H 0.054 0.946 37 H 0.254 0.746 38 H 0.087 0.913 39 H 0.070 0.930 40 H 0.081 0.919 41 H 0.067 0.933 42 H 0.074 0.926 43 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.297 2.746 10.424 14.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.132 4.132 3 C -0.101 4.101 4 C 0.334 3.666 5 O -0.438 6.438 6 N -0.336 5.336 7 C -0.040 4.040 8 C 0.030 3.970 9 H 0.123 0.877 10 C -0.192 4.192 11 C -0.007 4.007 12 H 0.129 0.871 13 C 0.052 3.948 14 N -0.319 5.319 15 C -0.360 4.360 16 H 0.097 0.903 17 C -0.202 4.202 18 N -0.566 5.566 19 Si 0.742 3.258 20 H -0.212 1.212 21 H -0.216 1.216 22 H -0.211 1.211 23 C -0.150 4.150 24 C -0.178 4.178 25 C -0.162 4.162 26 H 0.071 0.929 27 H 0.078 0.922 28 H 0.075 0.925 29 H 0.093 0.907 30 H 0.087 0.913 31 H 0.071 0.929 32 H 0.090 0.910 33 H 0.082 0.918 34 H 0.101 0.899 35 H 0.064 0.936 36 H 0.072 0.928 37 H 0.065 0.935 38 H 0.106 0.894 39 H 0.089 0.911 40 H 0.099 0.901 41 H 0.086 0.914 42 H 0.093 0.907 43 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 8.633 3.084 10.505 13.943 hybrid contribution -0.301 -0.930 -0.548 1.121 sum 8.332 2.154 9.957 13.161 Atomic orbital electron populations 1.21717 0.95042 1.01859 1.02098 1.21302 0.96704 0.92568 1.02647 1.22104 0.96917 0.96700 0.94384 1.19873 0.80594 0.83765 0.82349 1.90633 1.37540 1.31496 1.84105 1.49166 1.41636 1.38038 1.04714 1.23343 0.90323 0.91857 0.98512 1.23179 0.91573 0.91802 0.90426 0.87738 1.24210 0.96975 0.98068 0.99916 1.24424 0.96211 0.98022 0.82050 0.87092 1.21799 0.89597 0.87143 0.96252 1.45083 0.99256 1.24772 1.62833 1.18990 0.92521 0.97764 1.26716 0.90274 1.24805 0.95505 0.98942 1.00910 1.69909 0.97987 1.38579 1.50100 0.86211 0.76910 0.82799 0.79867 1.21195 1.21637 1.21121 1.22842 0.96906 1.00825 0.94377 1.22861 0.97427 1.01369 0.96118 1.22934 0.94208 1.02486 0.96582 0.92941 0.92188 0.92491 0.90669 0.91317 0.92903 0.91013 0.91768 0.89946 0.93597 0.92757 0.93549 0.89442 0.91107 0.90063 0.91387 0.90740 0.90042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.35 9.63 37.16 0.36 -1.99 16 2 C -0.09 -1.34 5.19 -26.73 -0.14 -1.47 16 3 C -0.10 -1.42 0.40 -154.85 -0.06 -1.48 16 4 C 0.55 10.11 5.52 -10.99 -0.06 10.05 16 5 O -0.56 -12.14 16.52 5.55 0.09 -12.04 16 6 N -0.60 -11.16 2.95 -156.56 -0.46 -11.62 16 7 C 0.09 1.44 5.33 -1.67 -0.01 1.43 16 8 C 0.14 2.56 5.53 -62.55 -0.35 2.22 16 9 H 0.10 1.72 8.14 -51.93 -0.42 1.30 16 10 C -0.15 -2.60 6.84 -22.10 -0.15 -2.76 16 11 C 0.10 1.88 5.26 -62.35 -0.33 1.55 16 12 H 0.11 2.17 8.04 -51.93 -0.42 1.75 16 13 C 0.18 4.25 4.74 -1.96 -0.01 4.24 16 14 N -0.60 -14.15 3.01 -156.74 -0.47 -14.62 16 15 C -0.23 -6.10 10.37 -15.06 -0.16 -6.26 16 16 H 0.08 1.98 7.83 -52.49 -0.41 1.57 16 17 C 0.00 -0.13 5.49 -17.43 -0.10 -0.23 16 18 N -0.92 -26.61 10.53 55.49 0.58 -26.02 16 19 Si 0.91 21.56 29.55 -169.99 -5.02 16.53 16 20 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 21 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 22 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 23 C -0.11 -1.44 6.81 -25.82 -0.18 -1.62 16 24 C -0.14 -1.44 7.74 -25.82 -0.20 -1.64 16 25 C -0.12 -1.47 5.77 -25.92 -0.15 -1.62 16 26 H 0.05 0.75 7.55 -51.93 -0.39 0.35 16 27 H 0.06 1.15 7.12 -51.93 -0.37 0.78 16 28 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 29 H 0.07 1.15 5.90 -51.93 -0.31 0.84 16 30 H 0.07 0.80 7.31 -51.93 -0.38 0.42 16 31 H 0.05 0.75 7.10 -51.94 -0.37 0.38 16 32 H 0.07 1.33 6.18 -51.93 -0.32 1.00 16 33 H 0.06 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 35 H 0.05 1.26 7.68 -51.93 -0.40 0.87 16 36 H 0.05 1.45 7.42 -51.93 -0.39 1.06 16 37 H 0.25 7.24 8.31 -40.82 -0.34 6.90 16 38 H 0.09 1.23 7.74 -51.93 -0.40 0.83 16 39 H 0.07 0.87 7.50 -51.93 -0.39 0.48 16 40 H 0.08 0.74 7.61 -51.93 -0.40 0.35 16 41 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.07 0.80 7.98 -51.93 -0.41 0.39 16 43 H 0.08 0.99 8.09 -51.93 -0.42 0.57 16 LS Contribution 328.57 15.07 4.95 4.95 Total: -1.00 -30.58 328.57 -8.87 -39.45 By element: Atomic # 1 Polarization: 9.97 SS G_CDS: -7.02 Total: 2.95 kcal Atomic # 6 Polarization: 1.96 SS G_CDS: -1.52 Total: 0.43 kcal Atomic # 7 Polarization: -51.92 SS G_CDS: -0.35 Total: -52.27 kcal Atomic # 8 Polarization: -12.14 SS G_CDS: 0.09 Total: -12.04 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -30.58 -8.87 -39.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032568751.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.170 kcal (2) G-P(sol) polarization free energy of solvation -30.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.872 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.449 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.721 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds