Wall clock time and date at job start Tue Mar 31 2020 00:07:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52994 * 109.47573 * 2 1 4 4 C 1.50700 * 112.84904 * 304.49688 * 3 2 1 5 5 O 1.21286 * 119.99870 * 113.20198 * 4 3 2 6 6 N 1.34769 * 119.99999 * 293.20784 * 4 3 2 7 7 C 1.47871 * 126.94594 * 354.91158 * 6 4 3 8 8 C 1.56021 * 105.10355 * 181.98050 * 7 6 4 9 9 H 1.08997 * 116.24703 * 158.83625 * 8 7 6 10 10 C 1.57085 * 99.60761 * 32.80686 * 8 7 6 11 11 C 1.49293 * 126.94198 * 174.60120 * 6 4 3 12 12 H 1.08998 * 116.15501 * 16.72186 * 11 6 4 13 13 C 1.56022 * 104.09096 * 246.71582 * 11 6 4 14 14 N 1.47357 * 105.15178 * 288.60761 * 13 11 6 15 15 C 1.36938 * 126.79327 * 182.05927 * 14 13 11 16 16 H 1.07994 * 119.99831 * 180.28829 * 15 14 13 17 17 C 1.38809 * 119.99944 * 0.28725 * 15 14 13 18 18 N 1.31619 * 120.00028 * 0.02562 * 17 15 14 19 19 Si 1.86793 * 120.00067 * 179.97438 * 17 15 14 20 20 H 1.48500 * 109.47228 * 60.00215 * 19 17 15 21 21 H 1.48498 * 109.47120 * 179.97438 * 19 17 15 22 22 H 1.48504 * 109.47293 * 300.00203 * 19 17 15 23 23 C 1.53785 * 113.61553 * 75.68945 * 3 2 1 24 24 C 1.53956 * 87.01889 * 89.23287 * 23 3 2 25 25 C 1.53773 * 113.61677 * 173.29993 * 3 2 1 26 26 H 1.08997 * 109.47421 * 295.50850 * 1 2 3 27 27 H 1.09004 * 109.46758 * 55.50614 * 1 2 3 28 28 H 1.08997 * 109.47461 * 175.50685 * 1 2 3 29 29 H 1.09002 * 109.47025 * 239.99428 * 2 1 3 30 30 H 1.09006 * 109.46789 * 120.00401 * 2 1 3 31 31 H 1.08989 * 110.31487 * 300.88997 * 7 6 4 32 32 H 1.09003 * 110.31043 * 63.07635 * 7 6 4 33 33 H 1.09000 * 112.36479 * 64.27237 * 10 8 7 34 34 H 1.09000 * 112.36720 * 191.62186 * 10 8 7 35 35 H 1.09002 * 110.31322 * 47.68134 * 13 11 6 36 36 H 1.09003 * 110.31494 * 169.86395 * 13 11 6 37 37 H 0.96993 * 120.00391 * 180.02562 * 18 17 15 38 38 H 1.08998 * 113.61718 * 203.74923 * 23 3 2 39 39 H 1.08998 * 113.61539 * 334.65640 * 23 3 2 40 40 H 1.09004 * 113.53322 * 270.81773 * 24 23 3 41 41 H 1.08997 * 113.74930 * 139.94404 * 24 23 3 42 42 H 1.09000 * 113.61413 * 25.35041 * 25 3 2 43 43 H 1.09007 * 113.61648 * 156.16901 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 1.4937 2.2563 -1.1445 5 8 0.7366 3.1783 -0.9259 6 7 1.8461 1.9596 -2.4110 7 6 2.8309 0.9455 -2.8452 8 6 2.8780 1.0643 -4.4002 9 1 3.7720 0.6741 -4.8865 10 6 2.6122 2.6049 -4.5536 11 6 1.3166 2.5840 -3.6595 12 1 0.7929 3.5322 -3.5377 13 6 0.5334 1.4299 -4.3587 14 7 1.5691 0.5026 -4.8475 15 6 1.3686 -0.6469 -5.5642 16 1 2.2125 -1.2504 -5.8641 17 6 0.0806 -1.0365 -5.9050 18 7 -0.9478 -0.3008 -5.5399 19 14 -0.1929 -2.6042 -6.8831 20 1 0.3426 -3.7619 -6.1227 21 1 -1.6471 -2.7953 -7.1155 22 1 0.5083 -2.5021 -8.1882 23 6 1.9171 2.1393 1.3653 24 6 3.3197 1.5893 1.6822 25 6 3.5647 1.5566 0.1644 26 1 -0.3634 0.4425 0.9274 27 1 -0.3633 0.5820 -0.8470 28 1 -0.3634 -1.0245 -0.0805 29 1 1.8933 -0.5139 -0.8900 30 1 1.8933 -0.5139 0.8900 31 1 3.8103 1.1625 -2.4192 32 1 2.5019 -0.0513 -2.5516 33 1 3.4094 3.2085 -4.1199 34 1 2.4008 2.8886 -5.5846 35 1 -0.1196 0.9287 -3.6443 36 1 -0.0472 1.8191 -5.1951 37 1 -1.8478 -0.5731 -5.7777 38 1 1.8794 3.2266 1.2988 39 1 1.1317 1.7254 1.9977 40 1 3.3060 0.6018 2.1435 41 1 3.9586 2.2954 2.2126 42 1 4.1075 0.6731 -0.1714 43 1 3.9785 2.4838 -0.2324 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032568751.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:07:07 Heat of formation + Delta-G solvation = 17.678223 kcal Electronic energy + Delta-G solvation = -23536.149138 eV Core-core repulsion = 20389.704565 eV Total energy + Delta-G solvation = -3146.444573 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.02265 -40.44930 -38.28955 -35.45339 -33.60466 -33.01959 -30.78298 -30.24331 -27.33980 -27.00832 -26.51391 -25.18926 -23.79606 -22.36389 -21.44335 -20.36916 -19.58176 -18.59009 -17.64061 -17.47111 -16.72388 -16.49817 -16.06298 -15.83886 -15.23235 -14.96865 -14.81599 -14.17315 -13.85151 -13.70306 -13.49846 -13.40599 -13.20712 -13.12416 -12.86594 -12.72425 -12.66304 -12.48213 -12.29527 -12.23341 -12.15026 -12.02398 -11.92759 -11.77119 -11.51062 -11.24477 -11.11017 -10.78651 -10.43087 -9.47457 -8.89944 -7.83277 -5.19428 1.46770 1.49544 1.55667 1.67920 2.08436 2.49044 3.33524 3.36642 3.45843 3.50468 3.71897 3.76092 3.89514 3.91704 4.00414 4.04515 4.20013 4.28439 4.42099 4.46175 4.62043 4.64952 4.78221 4.80600 4.84637 4.88776 4.90694 4.97994 5.01844 5.06107 5.11818 5.13604 5.14576 5.22772 5.31095 5.35009 5.45919 5.51798 5.58858 5.65753 6.10805 6.74767 7.04103 7.23965 7.72278 8.42596 9.27369 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.022649 B = 0.005867 C = 0.005447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1235.979571 B = 4770.930087 C = 5139.036247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.088 4.088 3 C -0.105 4.105 4 C 0.537 3.463 5 O -0.601 6.601 6 N -0.605 5.605 7 C 0.094 3.906 8 C 0.133 3.867 9 H 0.136 0.864 10 C -0.129 4.129 11 C 0.094 3.906 12 H 0.106 0.894 13 C 0.194 3.806 14 N -0.613 5.613 15 C -0.230 4.230 16 H 0.096 0.904 17 C -0.070 4.070 18 N -0.958 5.958 19 Si 0.976 3.024 20 H -0.276 1.276 21 H -0.304 1.304 22 H -0.274 1.274 23 C -0.117 4.117 24 C -0.120 4.120 25 C -0.118 4.118 26 H 0.064 0.936 27 H 0.010 0.990 28 H 0.061 0.939 29 H 0.062 0.938 30 H 0.105 0.895 31 H 0.098 0.902 32 H 0.056 0.944 33 H 0.101 0.899 34 H 0.078 0.922 35 H -0.005 1.005 36 H 0.014 0.986 37 H 0.243 0.757 38 H 0.069 0.931 39 H 0.073 0.927 40 H 0.101 0.899 41 H 0.085 0.915 42 H 0.093 0.907 43 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.127 1.867 11.771 17.730 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.126 4.126 3 C -0.108 4.108 4 C 0.328 3.672 5 O -0.483 6.483 6 N -0.337 5.337 7 C -0.030 4.030 8 C 0.027 3.973 9 H 0.154 0.846 10 C -0.169 4.169 11 C -0.010 4.010 12 H 0.124 0.876 13 C 0.067 3.933 14 N -0.337 5.337 15 C -0.358 4.358 16 H 0.114 0.886 17 C -0.263 4.263 18 N -0.607 5.607 19 Si 0.805 3.195 20 H -0.201 1.201 21 H -0.231 1.231 22 H -0.199 1.199 23 C -0.155 4.155 24 C -0.157 4.157 25 C -0.155 4.155 26 H 0.083 0.917 27 H 0.030 0.970 28 H 0.080 0.920 29 H 0.081 0.919 30 H 0.124 0.876 31 H 0.116 0.884 32 H 0.075 0.925 33 H 0.119 0.881 34 H 0.097 0.903 35 H 0.013 0.987 36 H 0.032 0.968 37 H 0.052 0.948 38 H 0.088 0.912 39 H 0.092 0.908 40 H 0.120 0.880 41 H 0.104 0.896 42 H 0.111 0.889 43 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 12.541 2.196 11.859 17.399 hybrid contribution -1.522 -0.614 -0.955 1.899 sum 11.019 1.582 10.904 15.583 Atomic orbital electron populations 1.21690 0.96946 1.01279 1.00554 1.21292 0.94915 0.92612 1.03738 1.22274 0.99363 0.96097 0.93105 1.20782 0.79761 0.83543 0.83124 1.90600 1.39318 1.33592 1.84762 1.49261 1.41824 1.38211 1.04434 1.23265 0.91687 0.90734 0.97328 1.23612 0.90137 0.92178 0.91373 0.84604 1.24107 0.95913 0.97609 0.99233 1.24221 0.97203 0.96099 0.83440 0.87603 1.21341 0.89684 0.88325 0.93913 1.45322 1.01508 1.24299 1.62604 1.19500 0.92796 0.98272 1.25257 0.88609 1.25650 0.95603 1.02167 1.02871 1.70168 0.97858 1.40484 1.52224 0.85176 0.75864 0.79530 0.78914 1.20150 1.23115 1.19947 1.22878 0.99338 0.99816 0.93502 1.22820 0.95018 1.02631 0.95230 1.22965 0.91453 1.03269 0.97851 0.91654 0.97029 0.92034 0.91917 0.87622 0.88429 0.92547 0.88095 0.90338 0.98703 0.96801 0.94807 0.91182 0.90816 0.88024 0.89632 0.88875 0.90151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.70 9.63 71.98 0.69 -4.00 16 2 C -0.09 -2.33 5.19 30.59 0.16 -2.17 16 3 C -0.11 -2.86 0.40 -52.41 -0.02 -2.88 16 4 C 0.54 19.95 5.52 87.66 0.48 20.44 16 5 O -0.60 -27.02 16.52 -3.05 -0.05 -27.07 16 6 N -0.61 -22.22 2.95 -767.62 -2.26 -24.48 16 7 C 0.09 2.95 5.33 87.16 0.46 3.42 16 8 C 0.13 4.59 5.53 46.93 0.26 4.85 16 9 H 0.14 3.88 8.14 -2.39 -0.02 3.86 16 10 C -0.13 -4.16 6.84 33.60 0.23 -3.93 16 11 C 0.09 3.78 5.26 47.06 0.25 4.03 16 12 H 0.11 4.33 8.04 -2.39 -0.02 4.32 16 13 C 0.19 9.85 4.74 87.26 0.41 10.27 16 14 N -0.61 -29.40 3.01 -649.80 -1.95 -31.35 16 15 C -0.23 -12.10 10.37 84.03 0.87 -11.22 16 16 H 0.10 4.63 7.83 -2.91 -0.02 4.61 16 17 C -0.07 -3.95 5.49 84.86 0.47 -3.48 16 18 N -0.96 -58.76 10.53 21.65 0.23 -58.53 16 19 Si 0.98 45.15 29.55 68.60 2.03 47.18 16 20 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 21 H -0.30 -14.62 7.11 99.48 0.71 -13.91 16 22 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 23 C -0.12 -2.79 6.81 31.18 0.21 -2.58 16 24 C -0.12 -1.92 7.74 31.18 0.24 -1.68 16 25 C -0.12 -2.29 5.77 31.12 0.18 -2.11 16 26 H 0.06 1.86 7.55 -2.39 -0.02 1.84 16 27 H 0.01 0.44 7.12 -2.38 -0.02 0.42 16 28 H 0.06 1.84 8.14 -2.39 -0.02 1.83 16 29 H 0.06 1.82 5.90 -2.39 -0.01 1.81 16 30 H 0.11 2.05 7.31 -2.38 -0.02 2.03 16 31 H 0.10 2.27 7.10 -2.39 -0.02 2.25 16 32 H 0.06 1.99 6.18 -2.39 -0.01 1.98 16 33 H 0.10 2.59 8.14 -2.39 -0.02 2.57 16 34 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 35 H -0.01 -0.31 7.68 -2.39 -0.02 -0.33 16 36 H 0.01 0.80 7.42 -2.39 -0.02 0.78 16 37 H 0.24 14.75 8.31 -92.71 -0.77 13.98 16 38 H 0.07 1.91 7.74 -2.39 -0.02 1.90 16 39 H 0.07 1.68 7.50 -2.39 -0.02 1.66 16 40 H 0.10 1.28 7.61 -2.38 -0.02 1.26 16 41 H 0.09 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.09 1.50 7.98 -2.39 -0.02 1.48 16 43 H 0.08 1.62 8.09 -2.38 -0.02 1.60 16 Total: -1.00 -72.32 328.57 3.87 -68.44 By element: Atomic # 1 Polarization: 15.89 SS G_CDS: 0.98 Total: 16.87 kcal Atomic # 6 Polarization: 4.04 SS G_CDS: 4.90 Total: 8.94 kcal Atomic # 7 Polarization: -110.38 SS G_CDS: -3.99 Total: -114.36 kcal Atomic # 8 Polarization: -27.02 SS G_CDS: -0.05 Total: -27.07 kcal Atomic # 14 Polarization: 45.15 SS G_CDS: 2.03 Total: 47.18 kcal Total: -72.32 3.87 -68.44 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032568751.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.121 kcal (2) G-P(sol) polarization free energy of solvation -72.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.443 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds