Wall clock time and date at job start Tue Mar 31 2020 00:17:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.46950 * 2 1 4 4 C 1.50697 * 109.47285 * 120.00243 * 2 1 3 5 5 O 1.21284 * 119.99761 * 355.01497 * 4 2 1 6 6 N 1.34774 * 120.00051 * 175.01769 * 4 2 1 7 7 C 1.47872 * 126.94672 * 355.14391 * 6 4 2 8 8 C 1.56018 * 105.10630 * 182.02246 * 7 6 4 9 9 H 1.08992 * 116.89287 * 159.20595 * 8 7 6 10 10 C 1.57090 * 99.60372 * 32.80979 * 8 7 6 11 11 C 1.49293 * 126.94262 * 175.17249 * 6 4 2 12 12 H 1.08995 * 116.78791 * 16.28836 * 11 6 4 13 13 C 1.56024 * 104.09017 * 246.67340 * 11 6 4 14 14 N 1.47864 * 105.10399 * 288.76819 * 13 11 6 15 15 C 1.36939 * 126.94415 * 182.02616 * 14 13 11 16 16 H 1.08003 * 120.00409 * 179.97438 * 15 14 13 17 17 C 1.38816 * 119.99956 * 359.97102 * 15 14 13 18 18 N 1.31617 * 119.99934 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00356 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.46920 * 59.99871 * 19 17 15 21 21 H 1.48496 * 109.47403 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.46726 * 300.00056 * 19 17 15 23 23 C 1.53000 * 109.47293 * 240.00503 * 2 1 3 24 24 C 1.53000 * 117.50159 * 128.62138 * 23 2 1 25 25 C 1.52995 * 117.50025 * 59.99642 * 23 2 1 26 26 H 1.09002 * 109.47386 * 303.68780 * 1 2 3 27 27 H 1.09003 * 109.47532 * 63.68789 * 1 2 3 28 28 H 1.08997 * 109.47415 * 183.68720 * 1 2 3 29 29 H 1.09005 * 109.46980 * 173.76117 * 3 2 1 30 30 H 1.08997 * 109.47399 * 293.76239 * 3 2 1 31 31 H 1.08998 * 109.46834 * 53.76403 * 3 2 1 32 32 H 1.09000 * 110.31216 * 63.11904 * 7 6 4 33 33 H 1.08996 * 110.31502 * 300.93770 * 7 6 4 34 34 H 1.08993 * 112.37204 * 64.27256 * 10 8 7 35 35 H 1.09000 * 112.36322 * 191.71575 * 10 8 7 36 36 H 1.08998 * 110.31645 * 47.67819 * 13 11 6 37 37 H 1.09006 * 110.31156 * 169.76179 * 13 11 6 38 38 H 0.97000 * 120.00710 * 179.97438 * 18 17 15 39 39 H 1.08999 * 115.54523 * 274.32921 * 23 2 1 40 40 H 1.08999 * 117.50010 * 359.97438 * 24 23 2 41 41 H 1.09005 * 117.49580 * 145.02120 * 24 23 2 42 42 H 1.09008 * 117.49957 * 214.98036 * 25 23 2 43 43 H 1.09003 * 117.49924 * 359.97438 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 1.2479 -1.0917 2.0732 6 7 3.3532 -0.9221 1.3942 7 6 4.4292 -0.6152 0.4274 8 6 5.7421 -1.1101 1.1096 9 1 6.5938 -1.3037 0.4576 10 6 5.1759 -2.3394 1.9070 11 6 4.0257 -1.5144 2.5883 12 1 3.3917 -2.0533 3.2923 13 6 4.8632 -0.3363 3.1759 14 7 5.9683 -0.1324 2.2149 15 6 6.9927 0.7705 2.3181 16 1 7.7454 0.8240 1.5455 17 6 7.0636 1.6173 3.4159 18 7 6.1465 1.5519 4.3577 19 14 8.4604 2.8495 3.5564 20 1 8.4255 3.7721 2.3934 21 1 8.3090 3.6284 4.8116 22 1 9.7576 2.1269 3.5763 23 6 2.0400 -0.7211 -1.2493 24 6 3.0741 0.0053 -2.1117 25 6 1.6357 -0.1494 -2.6096 26 1 -0.3634 0.5700 0.8551 27 1 -0.3634 0.4555 -0.9212 28 1 -0.3634 -1.0255 0.0661 29 1 3.1242 1.4446 0.1117 30 1 1.7706 1.9232 -0.9405 31 1 1.5883 1.9875 0.8289 32 1 4.4790 0.4583 0.2449 33 1 4.2627 -1.1513 -0.5068 34 1 4.7931 -3.1198 1.2494 35 1 5.8914 -2.7294 2.6309 36 1 4.2524 0.5637 3.2468 37 1 5.2568 -0.6041 4.1564 38 1 6.1962 2.1432 5.1250 39 1 2.1267 -1.8043 -1.1643 40 1 3.3908 0.9972 -1.7893 41 1 3.8415 -0.6000 -2.5942 42 1 1.4568 -0.8564 -3.4197 43 1 1.0060 0.7403 -2.6145 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032577170.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:17:11 Heat of formation + Delta-G solvation = 48.726572 kcal Electronic energy + Delta-G solvation = -23570.525394 eV Core-core repulsion = 20425.427179 eV Total energy + Delta-G solvation = -3145.098215 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -40.56192 -38.67284 -37.19340 -33.56436 -32.73283 -31.37475 -29.07295 -28.50193 -27.19541 -25.24661 -24.61743 -23.31993 -22.22597 -21.10790 -19.92255 -19.16589 -18.16949 -17.13767 -16.46248 -15.83579 -15.28427 -15.15275 -14.45964 -14.26671 -13.93838 -13.43531 -13.16879 -12.73000 -12.48972 -12.37121 -12.07386 -11.98643 -11.76815 -11.62027 -11.29434 -11.24435 -11.01963 -10.95970 -10.83665 -10.74150 -10.67728 -10.56582 -10.46793 -10.23218 -10.07276 -9.87836 -9.60653 -9.15685 -8.68068 -7.90257 -6.91076 -5.76319 -3.10730 3.10975 3.36834 3.41201 3.43319 3.47627 3.76281 4.42074 4.62431 4.74456 4.87697 4.98538 5.07966 5.21710 5.25058 5.28533 5.41035 5.51298 5.58095 5.60423 5.67734 5.73246 5.80622 5.82858 5.91502 5.93864 6.00386 6.05174 6.11406 6.18849 6.25184 6.32920 6.34904 6.43637 6.46454 6.60586 6.62313 6.78598 7.43075 7.50759 7.72175 8.10294 8.20308 8.68895 9.10627 9.71595 10.41414 11.35612 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.021457 B = 0.005852 C = 0.005595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.642572 B = 4783.242830 C = 5003.519376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.046 4.046 3 C -0.149 4.149 4 C 0.539 3.461 5 O -0.558 6.558 6 N -0.600 5.600 7 C 0.084 3.916 8 C 0.136 3.864 9 H 0.104 0.896 10 C -0.152 4.152 11 C 0.095 3.905 12 H 0.112 0.888 13 C 0.176 3.824 14 N -0.597 5.597 15 C -0.231 4.231 16 H 0.080 0.920 17 C -0.006 4.006 18 N -0.920 5.920 19 Si 0.912 3.088 20 H -0.285 1.285 21 H -0.291 1.291 22 H -0.285 1.285 23 C -0.140 4.140 24 C -0.177 4.177 25 C -0.176 4.176 26 H 0.060 0.940 27 H 0.057 0.943 28 H 0.059 0.941 29 H 0.075 0.925 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.073 0.927 33 H 0.061 0.939 34 H 0.063 0.937 35 H 0.082 0.918 36 H 0.046 0.954 37 H 0.054 0.946 38 H 0.254 0.746 39 H 0.103 0.897 40 H 0.104 0.896 41 H 0.095 0.905 42 H 0.091 0.909 43 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.559 -4.506 -12.401 14.734 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.049 4.049 3 C -0.206 4.206 4 C 0.327 3.673 5 O -0.438 6.438 6 N -0.332 5.332 7 C -0.041 4.041 8 C 0.028 3.972 9 H 0.122 0.878 10 C -0.192 4.192 11 C -0.007 4.007 12 H 0.130 0.870 13 C 0.051 3.949 14 N -0.321 5.321 15 C -0.359 4.359 16 H 0.097 0.903 17 C -0.202 4.202 18 N -0.566 5.566 19 Si 0.742 3.258 20 H -0.212 1.212 21 H -0.216 1.216 22 H -0.211 1.211 23 C -0.159 4.159 24 C -0.214 4.214 25 C -0.213 4.213 26 H 0.079 0.921 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.094 0.906 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.091 0.909 33 H 0.079 0.921 34 H 0.082 0.918 35 H 0.100 0.900 36 H 0.064 0.936 37 H 0.072 0.928 38 H 0.064 0.936 39 H 0.121 0.879 40 H 0.122 0.878 41 H 0.113 0.887 42 H 0.110 0.890 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -6.963 -4.460 -11.769 14.384 hybrid contribution 0.738 0.754 0.166 1.068 sum -6.225 -3.705 -11.603 13.679 Atomic orbital electron populations 1.21598 0.92196 1.02591 1.01472 1.20221 0.97004 0.95847 0.91794 1.22060 1.02878 0.93525 1.02103 1.19981 0.80812 0.79070 0.87423 1.90639 1.54769 1.52882 1.45465 1.49114 1.04853 1.60392 1.18867 1.23522 0.88466 1.00774 0.91334 1.23224 0.93527 0.89274 0.91197 0.87803 1.24158 0.98040 0.96921 1.00052 1.24315 0.91897 0.96351 0.88172 0.87049 1.21901 0.87572 0.93112 0.92363 1.45218 1.27516 1.39395 1.20001 1.18993 1.01537 1.10471 1.04904 0.90266 1.24810 0.98638 0.99780 0.97015 1.69906 1.34769 1.40788 1.11170 0.86212 0.81578 0.81006 0.77004 1.21191 1.21644 1.21132 1.22149 1.04390 0.98850 0.90474 1.23245 0.92213 1.02807 1.03091 1.22992 0.98560 1.03102 0.96681 0.92051 0.92361 0.92191 0.90632 0.91808 0.92121 0.90872 0.92064 0.91802 0.89956 0.93586 0.92794 0.93553 0.87888 0.87765 0.88682 0.89007 0.88786 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.61 7.66 37.15 0.28 -1.33 16 2 C -0.05 -0.66 0.60 -155.66 -0.09 -0.75 16 3 C -0.15 -2.10 6.99 37.16 0.26 -1.84 16 4 C 0.54 10.03 6.59 -10.99 -0.07 9.96 16 5 O -0.56 -12.17 16.35 5.55 0.09 -12.08 16 6 N -0.60 -11.08 2.93 -156.77 -0.46 -11.54 16 7 C 0.08 1.41 4.14 -1.67 -0.01 1.40 16 8 C 0.14 2.51 5.53 -62.55 -0.35 2.17 16 9 H 0.10 1.72 8.14 -51.93 -0.42 1.30 16 10 C -0.15 -2.61 6.81 -22.29 -0.15 -2.76 16 11 C 0.10 1.88 5.24 -62.54 -0.33 1.55 16 12 H 0.11 2.17 8.07 -51.93 -0.42 1.75 16 13 C 0.18 4.22 4.76 -1.68 -0.01 4.21 16 14 N -0.60 -14.20 3.02 -156.34 -0.47 -14.67 16 15 C -0.23 -6.08 10.38 -15.06 -0.16 -6.24 16 16 H 0.08 1.98 7.83 -52.48 -0.41 1.57 16 17 C -0.01 -0.15 5.49 -17.43 -0.10 -0.25 16 18 N -0.92 -26.72 10.56 55.49 0.59 -26.13 16 19 Si 0.91 21.57 29.55 -169.99 -5.02 16.55 16 20 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 21 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 23 C -0.14 -1.69 3.45 -90.62 -0.31 -2.00 16 24 C -0.18 -1.88 7.05 -26.73 -0.19 -2.07 16 25 C -0.18 -1.71 9.30 -26.73 -0.25 -1.96 16 26 H 0.06 0.88 8.13 -51.93 -0.42 0.45 16 27 H 0.06 0.63 7.16 -51.93 -0.37 0.26 16 28 H 0.06 0.83 8.07 -51.93 -0.42 0.41 16 29 H 0.07 1.19 4.49 -51.93 -0.23 0.96 16 30 H 0.06 0.74 6.62 -51.93 -0.34 0.39 16 31 H 0.06 0.92 8.14 -51.93 -0.42 0.49 16 32 H 0.07 1.33 5.63 -51.93 -0.29 1.04 16 33 H 0.06 0.86 5.42 -51.93 -0.28 0.58 16 34 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 35 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 36 H 0.05 1.27 7.68 -51.93 -0.40 0.87 16 37 H 0.05 1.43 7.46 -51.93 -0.39 1.05 16 38 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 39 H 0.10 1.30 8.11 -51.93 -0.42 0.88 16 40 H 0.10 1.18 5.80 -51.93 -0.30 0.88 16 41 H 0.09 0.92 8.03 -51.93 -0.42 0.51 16 42 H 0.09 0.78 8.14 -51.92 -0.42 0.36 16 43 H 0.09 0.87 7.03 -51.93 -0.37 0.51 16 LS Contribution 322.26 15.07 4.86 4.86 Total: -1.00 -30.69 322.26 -8.62 -39.31 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: -6.73 Total: 3.63 kcal Atomic # 6 Polarization: 1.55 SS G_CDS: -1.46 Total: 0.08 kcal Atomic # 7 Polarization: -52.00 SS G_CDS: -0.35 Total: -52.35 kcal Atomic # 8 Polarization: -12.17 SS G_CDS: 0.09 Total: -12.08 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -30.69 -8.62 -39.31 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032577170.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.034 kcal (2) G-P(sol) polarization free energy of solvation -30.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.308 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds