Wall clock time and date at job start Tue Mar 31 2020 00:17:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.46950 * 2 1 4 4 C 1.50697 * 109.47285 * 120.00243 * 2 1 3 5 5 O 1.21284 * 119.99761 * 355.01497 * 4 2 1 6 6 N 1.34774 * 120.00051 * 175.01769 * 4 2 1 7 7 C 1.47872 * 126.94672 * 355.14391 * 6 4 2 8 8 C 1.56018 * 105.10630 * 182.02246 * 7 6 4 9 9 H 1.08992 * 116.89287 * 159.20595 * 8 7 6 10 10 C 1.57090 * 99.60372 * 32.80979 * 8 7 6 11 11 C 1.49293 * 126.94262 * 175.17249 * 6 4 2 12 12 H 1.08995 * 116.78791 * 16.28836 * 11 6 4 13 13 C 1.56024 * 104.09017 * 246.67340 * 11 6 4 14 14 N 1.47864 * 105.10399 * 288.76819 * 13 11 6 15 15 C 1.36939 * 126.94415 * 182.02616 * 14 13 11 16 16 H 1.08003 * 120.00409 * 179.97438 * 15 14 13 17 17 C 1.38816 * 119.99956 * 359.97102 * 15 14 13 18 18 N 1.31617 * 119.99934 * 0.02562 * 17 15 14 19 19 Si 1.86800 * 120.00356 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.46920 * 59.99871 * 19 17 15 21 21 H 1.48496 * 109.47403 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.46726 * 300.00056 * 19 17 15 23 23 C 1.53000 * 109.47293 * 240.00503 * 2 1 3 24 24 C 1.53000 * 117.50159 * 128.62138 * 23 2 1 25 25 C 1.52995 * 117.50025 * 59.99642 * 23 2 1 26 26 H 1.09002 * 109.47386 * 303.68780 * 1 2 3 27 27 H 1.09003 * 109.47532 * 63.68789 * 1 2 3 28 28 H 1.08997 * 109.47415 * 183.68720 * 1 2 3 29 29 H 1.09005 * 109.46980 * 173.76117 * 3 2 1 30 30 H 1.08997 * 109.47399 * 293.76239 * 3 2 1 31 31 H 1.08998 * 109.46834 * 53.76403 * 3 2 1 32 32 H 1.09000 * 110.31216 * 63.11904 * 7 6 4 33 33 H 1.08996 * 110.31502 * 300.93770 * 7 6 4 34 34 H 1.08993 * 112.37204 * 64.27256 * 10 8 7 35 35 H 1.09000 * 112.36322 * 191.71575 * 10 8 7 36 36 H 1.08998 * 110.31645 * 47.67819 * 13 11 6 37 37 H 1.09006 * 110.31156 * 169.76179 * 13 11 6 38 38 H 0.97000 * 120.00710 * 179.97438 * 18 17 15 39 39 H 1.08999 * 115.54523 * 274.32921 * 23 2 1 40 40 H 1.08999 * 117.50010 * 359.97438 * 24 23 2 41 41 H 1.09005 * 117.49580 * 145.02120 * 24 23 2 42 42 H 1.09008 * 117.49957 * 214.98036 * 25 23 2 43 43 H 1.09003 * 117.49924 * 359.97438 * 25 23 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0323 -0.7104 1.2304 5 8 1.2479 -1.0917 2.0732 6 7 3.3532 -0.9221 1.3942 7 6 4.4292 -0.6152 0.4274 8 6 5.7421 -1.1101 1.1096 9 1 6.5938 -1.3037 0.4576 10 6 5.1759 -2.3394 1.9070 11 6 4.0257 -1.5144 2.5883 12 1 3.3917 -2.0533 3.2923 13 6 4.8632 -0.3363 3.1759 14 7 5.9683 -0.1324 2.2149 15 6 6.9927 0.7705 2.3181 16 1 7.7454 0.8240 1.5455 17 6 7.0636 1.6173 3.4159 18 7 6.1465 1.5519 4.3577 19 14 8.4604 2.8495 3.5564 20 1 8.4255 3.7721 2.3934 21 1 8.3090 3.6284 4.8116 22 1 9.7576 2.1269 3.5763 23 6 2.0400 -0.7211 -1.2493 24 6 3.0741 0.0053 -2.1117 25 6 1.6357 -0.1494 -2.6096 26 1 -0.3634 0.5700 0.8551 27 1 -0.3634 0.4555 -0.9212 28 1 -0.3634 -1.0255 0.0661 29 1 3.1242 1.4446 0.1117 30 1 1.7706 1.9232 -0.9405 31 1 1.5883 1.9875 0.8289 32 1 4.4790 0.4583 0.2449 33 1 4.2627 -1.1513 -0.5068 34 1 4.7931 -3.1198 1.2494 35 1 5.8914 -2.7294 2.6309 36 1 4.2524 0.5637 3.2468 37 1 5.2568 -0.6041 4.1564 38 1 6.1962 2.1432 5.1250 39 1 2.1267 -1.8043 -1.1643 40 1 3.3908 0.9972 -1.7893 41 1 3.8415 -0.6000 -2.5942 42 1 1.4568 -0.8564 -3.4197 43 1 1.0060 0.7403 -2.6145 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032577170.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:17:11 Heat of formation + Delta-G solvation = 30.562113 kcal Electronic energy + Delta-G solvation = -23571.313064 eV Core-core repulsion = 20425.427179 eV Total energy + Delta-G solvation = -3145.885885 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.97380 -40.05620 -38.49253 -35.41654 -33.86774 -33.08880 -30.74989 -30.21401 -28.34353 -26.96392 -26.02490 -24.77987 -23.08463 -22.50834 -21.45563 -20.64722 -19.67756 -18.61664 -17.94295 -17.43067 -16.77804 -16.43163 -16.05316 -15.64078 -15.45245 -14.98408 -14.57662 -13.90000 -13.88476 -13.81923 -13.48019 -13.29615 -13.21759 -13.11869 -12.83776 -12.78816 -12.63857 -12.40029 -12.23627 -12.14166 -12.06137 -11.97320 -11.78446 -11.77079 -11.50024 -11.40525 -10.83991 -10.76430 -10.44806 -9.47118 -8.88619 -7.83214 -5.18911 1.47025 1.49821 1.55925 1.65146 2.04633 2.49355 2.90907 3.34000 3.37481 3.54080 3.67358 3.80836 3.90939 3.94255 4.03858 4.09424 4.19414 4.21914 4.30279 4.46753 4.62243 4.66488 4.71909 4.78979 4.83231 4.87603 4.90667 4.98433 5.01907 5.03362 5.09193 5.14356 5.21344 5.27817 5.31252 5.38394 5.39574 5.46462 5.56762 5.65500 6.10471 6.72937 7.03648 7.20452 7.72148 8.43197 9.27846 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.021457 B = 0.005852 C = 0.005595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1304.642572 B = 4783.242830 C = 5003.519376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.039 4.039 3 C -0.143 4.143 4 C 0.528 3.472 5 O -0.599 6.599 6 N -0.602 5.602 7 C 0.096 3.904 8 C 0.131 3.869 9 H 0.135 0.865 10 C -0.130 4.130 11 C 0.094 3.906 12 H 0.108 0.892 13 C 0.191 3.809 14 N -0.614 5.614 15 C -0.228 4.228 16 H 0.096 0.904 17 C -0.072 4.072 18 N -0.959 5.959 19 Si 0.976 3.024 20 H -0.275 1.275 21 H -0.304 1.304 22 H -0.274 1.274 23 C -0.157 4.157 24 C -0.177 4.177 25 C -0.154 4.154 26 H 0.042 0.958 27 H 0.090 0.910 28 H 0.052 0.948 29 H 0.057 0.943 30 H 0.095 0.905 31 H 0.039 0.961 32 H 0.059 0.941 33 H 0.101 0.899 34 H 0.100 0.900 35 H 0.079 0.921 36 H -0.005 1.005 37 H 0.015 0.985 38 H 0.243 0.757 39 H 0.101 0.899 40 H 0.097 0.903 41 H 0.110 0.890 42 H 0.111 0.889 43 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.040 -5.341 -16.262 18.152 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.042 4.042 3 C -0.200 4.200 4 C 0.318 3.682 5 O -0.481 6.481 6 N -0.333 5.333 7 C -0.028 4.028 8 C 0.024 3.976 9 H 0.152 0.848 10 C -0.169 4.169 11 C -0.009 4.009 12 H 0.126 0.874 13 C 0.065 3.935 14 N -0.339 5.339 15 C -0.357 4.357 16 H 0.114 0.886 17 C -0.264 4.264 18 N -0.608 5.608 19 Si 0.805 3.195 20 H -0.201 1.201 21 H -0.231 1.231 22 H -0.200 1.200 23 C -0.176 4.176 24 C -0.213 4.213 25 C -0.190 4.190 26 H 0.061 0.939 27 H 0.108 0.892 28 H 0.071 0.929 29 H 0.076 0.924 30 H 0.114 0.886 31 H 0.058 0.942 32 H 0.078 0.922 33 H 0.119 0.881 34 H 0.118 0.882 35 H 0.097 0.903 36 H 0.014 0.986 37 H 0.033 0.967 38 H 0.052 0.948 39 H 0.119 0.881 40 H 0.115 0.885 41 H 0.129 0.871 42 H 0.129 0.871 43 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -6.423 -5.320 -15.701 17.779 hybrid contribution 0.547 0.994 1.353 1.766 sum -5.877 -4.326 -14.348 16.097 Atomic orbital electron populations 1.21595 0.91446 1.02179 1.02283 1.20204 0.97541 0.95419 0.90997 1.22022 1.01450 0.93531 1.02973 1.20910 0.80394 0.78472 0.88411 1.90609 1.55724 1.54524 1.47245 1.49202 1.05416 1.60177 1.18525 1.23440 0.86854 1.00466 0.92031 1.23662 0.95248 0.88276 0.90390 0.84780 1.24059 0.96247 0.96862 0.99777 1.24142 0.92572 0.95188 0.89012 0.87370 1.21470 0.87716 0.92724 0.91621 1.45459 1.26743 1.40156 1.21547 1.19504 1.01794 1.09887 1.04514 0.88594 1.25655 1.01156 1.02312 0.97286 1.70160 1.37014 1.41879 1.11776 0.85174 0.79120 0.78795 0.76389 1.20134 1.23122 1.19971 1.22020 1.06723 0.98525 0.90306 1.23313 0.93172 1.02395 1.02464 1.23094 0.97651 1.03244 0.95040 0.93926 0.89161 0.92865 0.92375 0.88587 0.94151 0.92240 0.88082 0.88183 0.90291 0.98642 0.96689 0.94790 0.88061 0.88516 0.87132 0.87095 0.87967 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.98 7.66 71.98 0.55 -2.43 16 2 C -0.04 -1.06 0.60 -52.93 -0.03 -1.10 16 3 C -0.14 -3.90 6.99 71.98 0.50 -3.40 16 4 C 0.53 19.72 6.59 87.66 0.58 20.30 16 5 O -0.60 -26.89 16.35 -3.04 -0.05 -26.94 16 6 N -0.60 -22.03 2.93 -768.30 -2.25 -24.28 16 7 C 0.10 3.00 4.14 87.16 0.36 3.36 16 8 C 0.13 4.50 5.53 46.93 0.26 4.76 16 9 H 0.13 3.86 8.14 -2.39 -0.02 3.84 16 10 C -0.13 -4.19 6.81 33.47 0.23 -3.96 16 11 C 0.09 3.78 5.24 46.94 0.25 4.02 16 12 H 0.11 4.37 8.07 -2.39 -0.02 4.35 16 13 C 0.19 9.66 4.76 87.17 0.42 10.08 16 14 N -0.61 -29.40 3.02 -648.54 -1.96 -31.36 16 15 C -0.23 -12.00 10.38 84.03 0.87 -11.13 16 16 H 0.10 4.62 7.83 -2.91 -0.02 4.60 16 17 C -0.07 -4.02 5.49 84.86 0.47 -3.55 16 18 N -0.96 -58.73 10.56 21.65 0.23 -58.50 16 19 Si 0.98 45.08 29.55 68.60 2.03 47.11 16 20 H -0.28 -12.12 7.11 99.48 0.71 -11.42 16 21 H -0.30 -14.60 7.11 99.48 0.71 -13.89 16 22 H -0.27 -12.02 7.11 99.48 0.71 -11.32 16 23 C -0.16 -3.27 3.45 -10.80 -0.04 -3.31 16 24 C -0.18 -3.03 7.05 30.59 0.22 -2.82 16 25 C -0.15 -2.26 9.30 30.59 0.28 -1.98 16 26 H 0.04 1.22 8.13 -2.39 -0.02 1.20 16 27 H 0.09 1.68 7.16 -2.39 -0.02 1.66 16 28 H 0.05 1.42 8.07 -2.39 -0.02 1.40 16 29 H 0.06 1.80 4.49 -2.38 -0.01 1.79 16 30 H 0.10 1.97 6.62 -2.39 -0.02 1.96 16 31 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.06 2.09 5.63 -2.39 -0.01 2.07 16 33 H 0.10 2.42 5.42 -2.39 -0.01 2.41 16 34 H 0.10 2.58 8.14 -2.39 -0.02 2.56 16 35 H 0.08 2.63 8.14 -2.39 -0.02 2.61 16 36 H 0.00 -0.28 7.68 -2.39 -0.02 -0.30 16 37 H 0.01 0.86 7.46 -2.38 -0.02 0.84 16 38 H 0.24 14.74 8.31 -92.71 -0.77 13.96 16 39 H 0.10 2.19 8.11 -2.39 -0.02 2.17 16 40 H 0.10 1.85 5.80 -2.39 -0.01 1.84 16 41 H 0.11 1.58 8.03 -2.38 -0.02 1.57 16 42 H 0.11 1.29 8.14 -2.38 -0.02 1.27 16 43 H 0.10 1.38 7.03 -2.39 -0.02 1.36 16 Total: -1.00 -71.28 322.26 3.90 -67.38 By element: Atomic # 1 Polarization: 16.76 SS G_CDS: 1.00 Total: 17.76 kcal Atomic # 6 Polarization: 3.94 SS G_CDS: 4.91 Total: 8.85 kcal Atomic # 7 Polarization: -110.17 SS G_CDS: -3.98 Total: -114.15 kcal Atomic # 8 Polarization: -26.89 SS G_CDS: -0.05 Total: -26.94 kcal Atomic # 14 Polarization: 45.08 SS G_CDS: 2.03 Total: 47.11 kcal Total: -71.28 3.90 -67.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032577170.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.938 kcal (2) G-P(sol) polarization free energy of solvation -71.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.660 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.376 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.562 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds