Wall clock time and date at job start Tue Mar 31 2020 00:34:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50706 * 119.99754 * 2 1 4 4 C 1.53005 * 109.46864 * 127.26347 * 3 2 1 5 5 C 1.52999 * 109.47206 * 247.25922 * 3 2 1 6 6 C 1.52994 * 109.47372 * 300.00249 * 5 3 2 7 7 C 1.50697 * 109.47343 * 7.26763 * 3 2 1 8 8 O 1.21281 * 119.99786 * 245.74898 * 7 3 2 9 9 N 1.34775 * 120.00544 * 65.74137 * 7 3 2 10 10 C 1.47364 * 126.78826 * 355.44787 * 9 7 3 11 11 C 1.56013 * 105.14966 * 182.06077 * 10 9 7 12 12 H 1.08997 * 116.89916 * 159.04567 * 11 10 9 13 13 C 1.57432 * 99.69153 * 32.49723 * 11 10 9 14 14 C 1.49290 * 126.94715 * 175.16109 * 9 7 3 15 15 H 1.08995 * 116.78434 * 16.29014 * 14 9 7 16 16 C 1.56019 * 104.08909 * 246.67789 * 14 9 7 17 17 N 1.47870 * 105.10837 * 288.76776 * 16 14 9 18 18 C 1.36930 * 126.94659 * 181.98325 * 17 16 14 19 19 H 1.07997 * 120.00034 * 180.02562 * 18 17 16 20 20 C 1.38812 * 119.99949 * 0.02562 * 18 17 16 21 21 N 1.31618 * 119.99891 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 119.99930 * 179.97438 * 20 18 17 23 23 H 1.48508 * 109.47230 * 90.00208 * 22 20 18 24 24 H 1.48502 * 109.47403 * 210.00156 * 22 20 18 25 25 H 1.48501 * 109.47690 * 330.00503 * 22 20 18 26 26 H 1.08002 * 119.99345 * 179.97438 * 1 2 3 27 27 H 1.07996 * 120.00173 * 359.97438 * 1 2 3 28 28 H 1.08002 * 120.00660 * 180.02562 * 2 1 3 29 29 H 1.09002 * 109.47366 * 314.64701 * 4 3 2 30 30 H 1.08996 * 109.47327 * 74.64720 * 4 3 2 31 31 H 1.09005 * 109.46905 * 194.64762 * 4 3 2 32 32 H 1.09003 * 109.46588 * 60.00715 * 5 3 2 33 33 H 1.09006 * 109.46973 * 180.02562 * 5 3 2 34 34 H 1.09001 * 109.46872 * 180.02562 * 6 5 3 35 35 H 1.08997 * 109.46990 * 299.99628 * 6 5 3 36 36 H 1.08997 * 109.47139 * 60.00076 * 6 5 3 37 37 H 1.09000 * 110.43271 * 63.06519 * 10 9 7 38 38 H 1.09003 * 110.24301 * 300.95839 * 10 9 7 39 39 H 1.09004 * 112.53333 * 191.97917 * 13 11 10 40 40 H 1.09001 * 112.39464 * 64.47373 * 13 11 10 41 41 H 1.09001 * 110.31080 * 169.85861 * 16 14 9 42 42 H 1.09000 * 110.39895 * 47.71984 * 16 14 9 43 43 H 0.97008 * 119.99656 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 3.0749 1.3101 1.1481 5 6 2.8014 1.4681 -1.3303 6 6 3.7856 0.3110 -1.5127 7 6 1.0941 2.4449 0.1797 8 8 0.9260 3.2450 -0.7161 9 7 0.4137 2.5751 1.3359 10 6 0.4303 1.6453 2.4791 11 6 -0.5680 2.2525 3.5129 12 1 -0.9750 1.5739 4.2625 13 6 -1.6015 2.9138 2.5264 14 6 -0.5017 3.6908 1.7176 15 1 -0.8543 4.3345 0.9117 16 6 0.2351 4.4006 2.8955 17 7 0.1376 3.4609 4.0331 18 6 0.6053 3.6570 5.3050 19 1 0.4727 2.8898 6.0534 20 6 1.2498 4.8421 5.6325 21 7 1.4109 5.7773 4.7205 22 14 1.8871 5.1099 7.3678 23 1 3.2835 4.6138 7.4644 24 1 1.8535 6.5593 7.6894 25 1 1.0313 4.3696 8.3294 26 1 -0.5399 -0.9354 -0.0004 27 1 -0.5400 0.9353 0.0004 28 1 1.8501 -0.9353 -0.0004 29 1 2.5969 0.9397 2.0550 30 1 3.9174 0.6674 0.8929 31 1 3.4308 2.3269 1.3143 32 1 2.0808 1.4646 -2.1482 33 1 3.3467 2.4119 -1.3301 34 1 4.3116 0.4274 -2.4603 35 1 4.5061 0.3146 -0.6948 36 1 3.2406 -0.6329 -1.5128 37 1 1.4307 1.5874 2.9080 38 1 0.0958 0.6563 2.1657 39 1 -2.2939 3.5847 3.0350 40 1 -2.1227 2.1767 1.9155 41 1 -0.2586 5.3415 3.1385 42 1 1.2796 4.5772 2.6390 43 1 1.8610 6.6056 4.9495 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032605471.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:34:12 Heat of formation + Delta-G solvation = 46.536661 kcal Electronic energy + Delta-G solvation = -23497.775302 eV Core-core repulsion = 20352.582125 eV Total energy + Delta-G solvation = -3145.193177 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.60926 -38.49109 -36.11065 -33.68925 -32.23680 -31.27329 -29.58351 -28.66312 -28.38946 -25.55691 -24.94937 -23.47791 -21.69203 -21.45476 -19.87479 -19.08622 -18.01199 -16.87642 -16.23273 -15.92370 -15.58917 -14.82716 -14.46551 -14.16375 -13.96053 -13.72727 -13.26367 -12.97753 -12.39441 -12.30014 -12.15645 -12.00059 -11.89772 -11.72013 -11.53499 -11.41137 -11.09787 -10.97487 -10.86680 -10.77608 -10.62756 -10.55384 -10.37699 -10.16086 -10.03174 -9.64375 -9.25360 -9.20310 -8.68732 -7.91721 -6.91454 -5.76846 -3.11076 2.29713 3.08288 3.36465 3.41408 3.43900 3.44547 4.41874 4.66172 4.80427 4.96971 5.10246 5.19763 5.22086 5.29518 5.38996 5.43409 5.57226 5.59098 5.62998 5.69556 5.78425 5.79356 5.92469 5.96604 6.04809 6.10255 6.11927 6.26941 6.32073 6.33700 6.43390 6.48158 6.57651 6.60271 6.62724 6.75165 6.78758 7.42730 7.49852 7.71892 8.09682 8.16935 8.64299 9.10296 9.71270 10.40928 11.35199 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.022872 B = 0.005685 C = 0.005305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.931833 B = 4923.872118 C = 5277.132934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.140 4.140 3 C -0.046 4.046 4 C -0.150 4.150 5 C -0.094 4.094 6 C -0.153 4.153 7 C 0.539 3.461 8 O -0.557 6.557 9 N -0.599 5.599 10 C 0.076 3.924 11 C 0.139 3.861 12 H 0.104 0.896 13 C -0.151 4.151 14 C 0.095 3.905 15 H 0.112 0.888 16 C 0.175 3.825 17 N -0.597 5.597 18 C -0.230 4.230 19 H 0.080 0.920 20 C -0.006 4.006 21 N -0.920 5.920 22 Si 0.912 3.088 23 H -0.289 1.289 24 H -0.291 1.291 25 H -0.281 1.281 26 H 0.100 0.900 27 H 0.102 0.898 28 H 0.117 0.883 29 H 0.073 0.927 30 H 0.067 0.933 31 H 0.062 0.938 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.053 0.947 35 H 0.059 0.941 36 H 0.055 0.945 37 H 0.077 0.923 38 H 0.060 0.940 39 H 0.082 0.918 40 H 0.064 0.936 41 H 0.054 0.946 42 H 0.046 0.954 43 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.586 -12.197 -8.184 14.700 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.158 4.158 3 C -0.050 4.050 4 C -0.207 4.207 5 C -0.132 4.132 6 C -0.210 4.210 7 C 0.328 3.672 8 O -0.436 6.436 9 N -0.332 5.332 10 C -0.049 4.049 11 C 0.030 3.970 12 H 0.122 0.878 13 C -0.191 4.191 14 C -0.007 4.007 15 H 0.130 0.870 16 C 0.050 3.950 17 N -0.321 5.321 18 C -0.358 4.358 19 H 0.098 0.902 20 C -0.203 4.203 21 N -0.566 5.566 22 Si 0.742 3.258 23 H -0.217 1.217 24 H -0.217 1.217 25 H -0.207 1.207 26 H 0.118 0.882 27 H 0.120 0.880 28 H 0.135 0.865 29 H 0.092 0.908 30 H 0.086 0.914 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.072 0.928 35 H 0.078 0.922 36 H 0.074 0.926 37 H 0.095 0.905 38 H 0.078 0.922 39 H 0.101 0.899 40 H 0.082 0.918 41 H 0.072 0.928 42 H 0.064 0.936 43 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -0.484 -11.559 -8.559 14.391 hybrid contribution 0.472 0.233 0.968 1.102 sum -0.011 -11.327 -7.591 13.635 Atomic orbital electron populations 1.24048 0.96155 1.02360 1.00055 1.22649 0.95610 0.96832 1.00748 1.19926 0.95128 0.91930 0.97974 1.22110 0.98112 1.03114 0.97325 1.21295 0.97895 0.99007 0.94998 1.21904 0.99197 0.98444 1.01504 1.19951 0.80427 0.85976 0.80877 1.90645 1.66651 1.45303 1.40977 1.49035 1.44602 1.24566 1.15004 1.23502 1.02134 0.91972 0.87306 1.23269 0.90657 0.90642 0.92451 0.87770 1.24210 0.96754 0.99700 0.98448 1.24318 0.90184 0.89445 0.96770 0.87018 1.21904 0.98149 0.91759 0.83162 1.45232 1.66154 1.13158 1.07586 1.19039 1.30655 1.00765 0.85367 0.90209 1.24807 1.00933 0.96600 0.97919 1.69922 1.47190 1.07427 1.32098 0.86131 0.78750 0.77137 0.83772 1.21655 1.21706 1.20651 0.88185 0.87973 0.86515 0.90787 0.91417 0.91857 0.91335 0.91292 0.92766 0.92237 0.92614 0.90475 0.92170 0.89914 0.91782 0.92757 0.93585 0.93618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.35 11.43 29.01 0.33 -2.02 16 2 C -0.14 -1.72 7.06 -36.02 -0.25 -1.97 16 3 C -0.05 -0.68 0.51 -156.81 -0.08 -0.75 16 4 C -0.15 -2.12 7.88 37.16 0.29 -1.82 16 5 C -0.09 -1.27 4.29 -26.73 -0.11 -1.39 16 6 C -0.15 -1.57 9.35 37.15 0.35 -1.22 16 7 C 0.54 9.95 4.97 -10.99 -0.05 9.90 16 8 O -0.56 -12.03 16.34 5.56 0.09 -11.94 16 9 N -0.60 -10.97 2.17 -157.19 -0.34 -11.31 16 10 C 0.08 1.29 4.51 -1.96 -0.01 1.28 16 11 C 0.14 2.55 5.54 -62.35 -0.35 2.21 16 12 H 0.10 1.73 8.14 -51.93 -0.42 1.31 16 13 C -0.15 -2.57 6.83 -22.10 -0.15 -2.73 16 14 C 0.10 1.86 5.24 -62.55 -0.33 1.53 16 15 H 0.11 2.15 8.06 -51.93 -0.42 1.73 16 16 C 0.18 4.20 4.76 -1.67 -0.01 4.19 16 17 N -0.60 -14.20 3.02 -156.12 -0.47 -14.67 16 18 C -0.23 -6.07 10.37 -15.06 -0.16 -6.22 16 19 H 0.08 2.00 7.83 -52.49 -0.41 1.59 16 20 C -0.01 -0.16 5.49 -17.43 -0.10 -0.26 16 21 N -0.92 -26.71 10.56 55.49 0.59 -26.13 16 22 Si 0.91 21.60 29.55 -169.99 -5.02 16.57 16 23 H -0.29 -6.88 7.11 56.52 0.40 -6.47 16 24 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 25 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 26 H 0.10 1.01 8.06 -52.49 -0.42 0.59 16 27 H 0.10 1.52 5.76 -52.49 -0.30 1.22 16 28 H 0.12 1.17 7.30 -52.49 -0.38 0.79 16 29 H 0.07 1.07 5.00 -51.93 -0.26 0.81 16 30 H 0.07 0.78 5.79 -51.93 -0.30 0.48 16 31 H 0.06 1.04 8.05 -51.93 -0.42 0.62 16 32 H 0.07 0.98 8.04 -51.93 -0.42 0.56 16 33 H 0.07 1.02 8.14 -51.93 -0.42 0.59 16 34 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.58 6.14 -51.93 -0.32 0.26 16 36 H 0.05 0.52 6.77 -51.93 -0.35 0.17 16 37 H 0.08 1.43 5.63 -51.93 -0.29 1.13 16 38 H 0.06 0.87 5.54 -51.93 -0.29 0.58 16 39 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 40 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 41 H 0.05 1.44 7.46 -51.93 -0.39 1.05 16 42 H 0.05 1.27 7.67 -51.93 -0.40 0.87 16 43 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 323.32 15.07 4.87 4.87 Total: -1.00 -30.62 323.32 -7.53 -38.15 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -6.62 Total: 3.73 kcal Atomic # 6 Polarization: 1.34 SS G_CDS: -0.62 Total: 0.72 kcal Atomic # 7 Polarization: -51.88 SS G_CDS: -0.23 Total: -52.11 kcal Atomic # 8 Polarization: -12.03 SS G_CDS: 0.09 Total: -11.94 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -30.62 -7.53 -38.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032605471.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.682 kcal (2) G-P(sol) polarization free energy of solvation -30.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.145 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.537 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds