Wall clock time and date at job start Tue Mar 31 2020 00:34:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30999 * 1 3 3 C 1.50706 * 119.99754 * 2 1 4 4 C 1.53005 * 109.46864 * 127.26347 * 3 2 1 5 5 C 1.52999 * 109.47206 * 247.25922 * 3 2 1 6 6 C 1.52994 * 109.47372 * 300.00249 * 5 3 2 7 7 C 1.50697 * 109.47343 * 7.26763 * 3 2 1 8 8 O 1.21281 * 119.99786 * 245.74898 * 7 3 2 9 9 N 1.34775 * 120.00544 * 65.74137 * 7 3 2 10 10 C 1.47364 * 126.78826 * 355.44787 * 9 7 3 11 11 C 1.56013 * 105.14966 * 182.06077 * 10 9 7 12 12 H 1.08997 * 116.89916 * 159.04567 * 11 10 9 13 13 C 1.57432 * 99.69153 * 32.49723 * 11 10 9 14 14 C 1.49290 * 126.94715 * 175.16109 * 9 7 3 15 15 H 1.08995 * 116.78434 * 16.29014 * 14 9 7 16 16 C 1.56019 * 104.08909 * 246.67789 * 14 9 7 17 17 N 1.47870 * 105.10837 * 288.76776 * 16 14 9 18 18 C 1.36930 * 126.94659 * 181.98325 * 17 16 14 19 19 H 1.07997 * 120.00034 * 180.02562 * 18 17 16 20 20 C 1.38812 * 119.99949 * 0.02562 * 18 17 16 21 21 N 1.31618 * 119.99891 * 0.02562 * 20 18 17 22 22 Si 1.86796 * 119.99930 * 179.97438 * 20 18 17 23 23 H 1.48508 * 109.47230 * 90.00208 * 22 20 18 24 24 H 1.48502 * 109.47403 * 210.00156 * 22 20 18 25 25 H 1.48501 * 109.47690 * 330.00503 * 22 20 18 26 26 H 1.08002 * 119.99345 * 179.97438 * 1 2 3 27 27 H 1.07996 * 120.00173 * 359.97438 * 1 2 3 28 28 H 1.08002 * 120.00660 * 180.02562 * 2 1 3 29 29 H 1.09002 * 109.47366 * 314.64701 * 4 3 2 30 30 H 1.08996 * 109.47327 * 74.64720 * 4 3 2 31 31 H 1.09005 * 109.46905 * 194.64762 * 4 3 2 32 32 H 1.09003 * 109.46588 * 60.00715 * 5 3 2 33 33 H 1.09006 * 109.46973 * 180.02562 * 5 3 2 34 34 H 1.09001 * 109.46872 * 180.02562 * 6 5 3 35 35 H 1.08997 * 109.46990 * 299.99628 * 6 5 3 36 36 H 1.08997 * 109.47139 * 60.00076 * 6 5 3 37 37 H 1.09000 * 110.43271 * 63.06519 * 10 9 7 38 38 H 1.09003 * 110.24301 * 300.95839 * 10 9 7 39 39 H 1.09004 * 112.53333 * 191.97917 * 13 11 10 40 40 H 1.09001 * 112.39464 * 64.47373 * 13 11 10 41 41 H 1.09001 * 110.31080 * 169.85861 * 16 14 9 42 42 H 1.09000 * 110.39895 * 47.71984 * 16 14 9 43 43 H 0.97008 * 119.99656 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3052 0.0000 4 6 3.0749 1.3101 1.1481 5 6 2.8014 1.4681 -1.3303 6 6 3.7856 0.3110 -1.5127 7 6 1.0941 2.4449 0.1797 8 8 0.9260 3.2450 -0.7161 9 7 0.4137 2.5751 1.3359 10 6 0.4303 1.6453 2.4791 11 6 -0.5680 2.2525 3.5129 12 1 -0.9750 1.5739 4.2625 13 6 -1.6015 2.9138 2.5264 14 6 -0.5017 3.6908 1.7176 15 1 -0.8543 4.3345 0.9117 16 6 0.2351 4.4006 2.8955 17 7 0.1376 3.4609 4.0331 18 6 0.6053 3.6570 5.3050 19 1 0.4727 2.8898 6.0534 20 6 1.2498 4.8421 5.6325 21 7 1.4109 5.7773 4.7205 22 14 1.8871 5.1099 7.3678 23 1 3.2835 4.6138 7.4644 24 1 1.8535 6.5593 7.6894 25 1 1.0313 4.3696 8.3294 26 1 -0.5399 -0.9354 -0.0004 27 1 -0.5400 0.9353 0.0004 28 1 1.8501 -0.9353 -0.0004 29 1 2.5969 0.9397 2.0550 30 1 3.9174 0.6674 0.8929 31 1 3.4308 2.3269 1.3143 32 1 2.0808 1.4646 -2.1482 33 1 3.3467 2.4119 -1.3301 34 1 4.3116 0.4274 -2.4603 35 1 4.5061 0.3146 -0.6948 36 1 3.2406 -0.6329 -1.5128 37 1 1.4307 1.5874 2.9080 38 1 0.0958 0.6563 2.1657 39 1 -2.2939 3.5847 3.0350 40 1 -2.1227 2.1767 1.9155 41 1 -0.2586 5.3415 3.1385 42 1 1.2796 4.5772 2.6390 43 1 1.8610 6.6056 4.9495 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032605471.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:34:11 Heat of formation + Delta-G solvation = 28.480464 kcal Electronic energy + Delta-G solvation = -23498.558277 eV Core-core repulsion = 20352.582125 eV Total energy + Delta-G solvation = -3145.976152 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.06476 -39.98171 -37.43942 -35.49185 -33.58387 -32.67726 -31.02835 -30.25289 -29.85272 -27.08016 -26.45274 -25.03880 -22.99792 -22.66303 -21.44071 -20.62759 -19.50781 -18.51516 -17.71855 -17.50783 -16.80303 -16.50338 -15.78308 -15.76786 -15.34959 -15.00093 -14.63179 -14.38551 -13.89106 -13.72015 -13.61764 -13.37034 -13.16162 -13.05680 -12.96450 -12.86005 -12.73071 -12.47778 -12.46464 -12.21003 -12.11762 -12.02638 -11.82524 -11.69917 -11.49459 -11.35588 -10.84310 -10.59592 -10.21126 -9.48021 -8.89552 -7.84129 -5.19752 1.35193 1.46877 1.48105 1.56845 1.62551 2.01641 2.48747 3.31723 3.35143 3.50119 3.71534 3.78142 3.91116 3.93914 4.03719 4.09407 4.20348 4.37830 4.45206 4.53787 4.59412 4.63235 4.70076 4.78076 4.89705 4.93220 4.98627 5.02189 5.07196 5.10167 5.13658 5.16253 5.26732 5.33329 5.44666 5.50215 5.56448 5.64005 5.64877 5.83952 6.09692 6.69664 7.02961 7.16314 7.71337 8.42248 9.27164 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.022872 B = 0.005685 C = 0.005305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1223.931833 B = 4923.872118 C = 5277.132934 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.138 4.138 3 C -0.043 4.043 4 C -0.144 4.144 5 C -0.093 4.093 6 C -0.145 4.145 7 C 0.530 3.470 8 O -0.598 6.598 9 N -0.600 5.600 10 C 0.086 3.914 11 C 0.133 3.867 12 H 0.135 0.865 13 C -0.129 4.129 14 C 0.095 3.905 15 H 0.109 0.891 16 C 0.190 3.810 17 N -0.615 5.615 18 C -0.227 4.227 19 H 0.097 0.903 20 C -0.072 4.072 21 N -0.959 5.959 22 Si 0.976 3.024 23 H -0.290 1.290 24 H -0.303 1.303 25 H -0.261 1.261 26 H 0.132 0.868 27 H 0.075 0.925 28 H 0.153 0.847 29 H 0.073 0.927 30 H 0.100 0.900 31 H 0.027 0.973 32 H 0.056 0.944 33 H 0.043 0.957 34 H 0.063 0.937 35 H 0.066 0.934 36 H 0.074 0.926 37 H 0.062 0.938 38 H 0.100 0.900 39 H 0.079 0.921 40 H 0.100 0.900 41 H 0.015 0.985 42 H -0.005 1.005 43 H 0.243 0.757 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.156 -16.345 -7.913 18.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.156 4.156 3 C -0.046 4.046 4 C -0.201 4.201 5 C -0.131 4.131 6 C -0.202 4.202 7 C 0.320 3.680 8 O -0.480 6.480 9 N -0.331 5.331 10 C -0.038 4.038 11 C 0.027 3.973 12 H 0.152 0.848 13 C -0.168 4.168 14 C -0.008 4.008 15 H 0.126 0.874 16 C 0.064 3.936 17 N -0.339 5.339 18 C -0.356 4.356 19 H 0.114 0.886 20 C -0.264 4.264 21 N -0.609 5.609 22 Si 0.805 3.195 23 H -0.217 1.217 24 H -0.230 1.230 25 H -0.186 1.186 26 H 0.150 0.850 27 H 0.093 0.907 28 H 0.170 0.830 29 H 0.092 0.908 30 H 0.118 0.882 31 H 0.046 0.954 32 H 0.075 0.925 33 H 0.062 0.938 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.093 0.907 37 H 0.080 0.920 38 H 0.118 0.882 39 H 0.098 0.902 40 H 0.119 0.881 41 H 0.034 0.966 42 H 0.013 0.987 43 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -1.078 -15.777 -8.277 17.848 hybrid contribution 0.626 1.540 0.830 1.858 sum -0.452 -14.237 -7.447 16.073 Atomic orbital electron populations 1.24141 0.96197 1.02575 0.99807 1.22767 0.95654 0.96350 1.00838 1.19981 0.94421 0.91770 0.98464 1.22078 0.99109 1.01621 0.97264 1.21291 0.98155 0.99581 0.94112 1.21865 0.98531 0.97455 1.02383 1.20843 0.80315 0.86641 0.80180 1.90614 1.67860 1.47105 1.42390 1.49092 1.44366 1.24179 1.15501 1.23415 1.01005 0.93094 0.86270 1.23695 0.90849 0.89369 0.93396 0.84772 1.24104 0.95601 0.99571 0.97511 1.24135 0.91214 0.90062 0.95402 0.87351 1.21475 0.95251 0.91412 0.85434 1.45474 1.66528 1.15052 1.06850 1.19544 1.28859 1.00554 0.86662 0.88570 1.25652 1.02351 0.96886 1.01514 1.70173 1.48917 1.07722 1.34047 0.85096 0.78166 0.76259 0.79931 1.21735 1.23001 1.18579 0.84967 0.90709 0.82954 0.90802 0.88197 0.95406 0.92486 0.93787 0.91757 0.91506 0.90682 0.91981 0.88248 0.90234 0.88135 0.96639 0.98700 0.94805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.97 11.43 67.78 0.78 -3.19 16 2 C -0.14 -2.85 7.06 25.65 0.18 -2.67 16 3 C -0.04 -1.20 0.51 -53.67 -0.03 -1.23 16 4 C -0.14 -3.91 7.88 71.98 0.57 -3.34 16 5 C -0.09 -2.45 4.29 30.59 0.13 -2.32 16 6 C -0.15 -2.54 9.35 71.98 0.67 -1.87 16 7 C 0.53 19.77 4.97 87.66 0.44 20.20 16 8 O -0.60 -26.89 16.34 -3.03 -0.05 -26.94 16 9 N -0.60 -21.87 2.17 -769.62 -1.67 -23.54 16 10 C 0.09 2.73 4.51 87.26 0.39 3.13 16 11 C 0.13 4.61 5.54 47.06 0.26 4.87 16 12 H 0.13 3.89 8.14 -2.39 -0.02 3.87 16 13 C -0.13 -4.12 6.83 33.59 0.23 -3.89 16 14 C 0.10 3.80 5.24 46.93 0.25 4.05 16 15 H 0.11 4.37 8.06 -2.39 -0.02 4.35 16 16 C 0.19 9.65 4.76 87.16 0.41 10.07 16 17 N -0.61 -29.46 3.02 -647.86 -1.96 -31.41 16 18 C -0.23 -11.99 10.37 84.03 0.87 -11.12 16 19 H 0.10 4.66 7.83 -2.91 -0.02 4.63 16 20 C -0.07 -4.02 5.49 84.86 0.47 -3.56 16 21 N -0.96 -58.86 10.56 21.65 0.23 -58.63 16 22 Si 0.98 45.20 29.55 68.60 2.03 47.22 16 23 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 24 H -0.30 -14.48 7.11 99.48 0.71 -13.77 16 25 H -0.26 -11.13 7.11 99.48 0.71 -10.42 16 26 H 0.13 1.93 8.06 -2.91 -0.02 1.91 16 27 H 0.07 2.02 5.76 -2.91 -0.02 2.01 16 28 H 0.15 2.15 7.30 -2.91 -0.02 2.13 16 29 H 0.07 2.00 5.00 -2.39 -0.01 1.99 16 30 H 0.10 2.04 5.79 -2.39 -0.01 2.03 16 31 H 0.03 0.93 8.05 -2.38 -0.02 0.91 16 32 H 0.06 1.61 8.04 -2.39 -0.02 1.59 16 33 H 0.04 1.34 8.14 -2.38 -0.02 1.32 16 34 H 0.06 1.01 8.14 -2.39 -0.02 0.99 16 35 H 0.07 1.08 6.14 -2.39 -0.01 1.06 16 36 H 0.07 1.05 6.77 -2.39 -0.02 1.03 16 37 H 0.06 2.21 5.63 -2.39 -0.01 2.20 16 38 H 0.10 2.44 5.54 -2.39 -0.01 2.43 16 39 H 0.08 2.64 8.14 -2.38 -0.02 2.62 16 40 H 0.10 2.57 8.14 -2.39 -0.02 2.55 16 41 H 0.02 0.89 7.46 -2.39 -0.02 0.87 16 42 H -0.01 -0.31 7.67 -2.39 -0.02 -0.33 16 43 H 0.24 14.72 8.31 -92.70 -0.77 13.95 16 Total: -1.00 -72.07 323.32 5.19 -66.88 By element: Atomic # 1 Polarization: 16.30 SS G_CDS: 0.99 Total: 17.29 kcal Atomic # 6 Polarization: 3.51 SS G_CDS: 5.62 Total: 9.13 kcal Atomic # 7 Polarization: -110.19 SS G_CDS: -3.40 Total: -113.59 kcal Atomic # 8 Polarization: -26.89 SS G_CDS: -0.05 Total: -26.94 kcal Atomic # 14 Polarization: 45.20 SS G_CDS: 2.03 Total: 47.22 kcal Total: -72.07 5.19 -66.88 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032605471.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.363 kcal (2) G-P(sol) polarization free energy of solvation -72.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.292 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.883 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.480 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds