Wall clock time and date at job start Tue Mar 31 2020 00:34:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50705 * 119.99790 * 2 1 4 4 C 1.53001 * 109.47033 * 359.97438 * 3 2 1 5 5 C 1.53007 * 109.46707 * 239.99994 * 3 2 1 6 6 C 1.53000 * 109.46835 * 305.34319 * 5 3 2 7 7 C 1.50698 * 109.47507 * 120.00063 * 3 2 1 8 8 O 1.21276 * 120.00249 * 124.64702 * 7 3 2 9 9 N 1.34777 * 119.99749 * 304.64356 * 7 3 2 10 10 C 1.47868 * 126.94472 * 174.12913 * 9 7 3 11 11 C 1.56000 * 105.11399 * 181.87573 * 10 9 7 12 12 H 1.09002 * 116.81074 * 159.42142 * 11 10 9 13 13 C 1.57081 * 99.47699 * 33.16394 * 11 10 9 14 14 C 1.49297 * 126.94539 * 354.44599 * 9 7 3 15 15 H 1.09005 * 116.14954 * 16.70133 * 14 9 7 16 16 C 1.56017 * 104.09182 * 247.56035 * 14 9 7 17 17 N 1.49292 * 104.31696 * 289.11476 * 11 10 9 18 18 C 1.36939 * 126.94236 * 246.61636 * 17 11 10 19 19 H 1.07996 * 120.00408 * 0.02562 * 18 17 11 20 20 C 1.38809 * 119.99910 * 180.02562 * 18 17 11 21 21 N 1.31620 * 119.99933 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00185 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.46821 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.47389 * 119.99944 * 22 20 18 25 25 H 1.48502 * 109.47328 * 239.99937 * 22 20 18 26 26 H 1.08006 * 119.99962 * 180.02562 * 1 2 3 27 27 H 1.08002 * 120.00214 * 0.02562 * 1 2 3 28 28 H 1.08000 * 120.00397 * 179.97438 * 2 1 3 29 29 H 1.08999 * 109.47498 * 295.03770 * 4 3 2 30 30 H 1.08998 * 109.46742 * 55.03802 * 4 3 2 31 31 H 1.08998 * 109.47005 * 175.03969 * 4 3 2 32 32 H 1.08998 * 109.47429 * 65.34335 * 5 3 2 33 33 H 1.08996 * 109.46913 * 185.34773 * 5 3 2 34 34 H 1.09003 * 109.46814 * 179.97438 * 6 5 3 35 35 H 1.09003 * 109.47463 * 299.99866 * 6 5 3 36 36 H 1.09000 * 109.47130 * 60.00019 * 6 5 3 37 37 H 1.08993 * 110.32058 * 300.91184 * 10 9 7 38 38 H 1.08999 * 110.31236 * 63.09834 * 10 9 7 39 39 H 1.08997 * 112.36958 * 191.50846 * 13 11 10 40 40 H 1.09003 * 112.36173 * 64.06934 * 13 11 10 41 41 H 1.09002 * 110.31569 * 47.67351 * 16 14 9 42 42 H 1.09003 * 110.31753 * 169.85760 * 16 14 9 43 43 H 0.97000 * 119.99962 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 1.0691 2.4680 -0.0006 5 6 2.9431 1.3862 -1.2493 6 6 3.8458 0.1528 -1.3182 7 6 2.9299 1.3851 1.2304 8 8 4.1218 1.5805 1.1211 9 7 2.3801 1.2396 2.4523 10 6 3.0938 1.1697 3.7454 11 6 1.9787 0.9516 4.8143 12 1 2.2903 0.5341 5.7717 13 6 0.9738 0.0908 3.9677 14 6 0.9278 1.1098 2.7732 15 1 0.2728 0.8540 1.9403 16 6 0.5888 2.4264 3.5385 17 7 1.2593 2.2586 4.8692 18 6 1.2228 3.1344 5.9212 19 1 1.7540 2.9054 6.8332 20 6 0.5032 4.3167 5.8154 21 7 -0.1438 4.5960 4.7038 22 14 0.4540 5.5118 7.2502 23 1 1.2585 4.9690 8.3743 24 1 1.0168 6.8188 6.8254 25 1 -0.9516 5.6981 7.6915 26 1 -0.5400 -0.9354 0.0004 27 1 -0.5400 0.9353 -0.0004 28 1 1.8500 -0.9353 0.0004 29 1 0.5028 2.4614 -0.9319 30 1 0.3852 2.3616 0.8413 31 1 1.6111 3.4095 0.0882 32 1 2.3113 1.4240 -2.1367 33 1 3.5584 2.2846 -1.2028 34 1 4.4721 0.2103 -2.2085 35 1 4.4777 0.1149 -0.4308 36 1 3.2305 -0.7457 -1.3647 37 1 3.7917 0.3325 3.7478 38 1 3.6216 2.1038 3.9373 39 1 0.0062 -0.0183 4.4575 40 1 1.3952 -0.8713 3.6762 41 1 0.9847 3.2887 3.0020 42 1 -0.4894 2.5224 3.6674 43 1 -0.6463 5.4224 4.6297 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032605473.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:34:14 Heat of formation + Delta-G solvation = 43.709195 kcal Electronic energy + Delta-G solvation = -23563.237138 eV Core-core repulsion = 20417.921352 eV Total energy + Delta-G solvation = -3145.315785 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.50864 -38.45879 -36.26347 -33.56216 -32.02064 -31.24865 -29.57305 -28.89875 -28.32909 -25.60705 -24.70167 -23.38378 -22.14458 -20.81694 -20.27864 -19.09851 -17.89577 -17.00392 -16.54599 -15.63148 -15.26787 -14.83903 -14.54078 -14.11914 -13.95221 -13.76828 -13.25933 -12.71532 -12.51345 -12.44080 -12.07965 -11.93026 -11.76985 -11.69095 -11.61662 -11.23859 -11.00328 -10.89268 -10.83830 -10.74062 -10.70819 -10.54419 -10.42018 -10.28325 -10.05614 -9.72682 -9.54343 -8.86630 -8.71943 -7.94156 -6.92931 -5.78160 -3.10703 2.22827 3.11490 3.37138 3.42967 3.45193 3.47589 4.41964 4.75571 4.77285 4.94248 4.99925 5.07852 5.31656 5.33110 5.36160 5.48686 5.61285 5.63309 5.66890 5.72181 5.75732 5.80610 5.97383 6.01716 6.04239 6.09742 6.19882 6.30106 6.30992 6.39062 6.44485 6.48745 6.54863 6.58660 6.65062 6.72146 6.84563 7.35170 7.40558 7.67160 8.05307 8.16882 8.67513 9.07518 9.70407 10.39388 11.35108 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.025627 B = 0.005504 C = 0.005414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.337397 B = 5086.420503 C = 5170.271549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.136 4.136 3 C -0.048 4.048 4 C -0.150 4.150 5 C -0.092 4.092 6 C -0.156 4.156 7 C 0.540 3.460 8 O -0.554 6.554 9 N -0.599 5.599 10 C 0.093 3.907 11 C 0.141 3.859 12 H 0.106 0.894 13 C -0.151 4.151 14 C 0.076 3.924 15 H 0.122 0.878 16 C 0.176 3.824 17 N -0.600 5.600 18 C -0.226 4.226 19 H 0.081 0.919 20 C -0.007 4.007 21 N -0.923 5.923 22 Si 0.912 3.088 23 H -0.280 1.280 24 H -0.291 1.291 25 H -0.291 1.291 26 H 0.100 0.900 27 H 0.109 0.891 28 H 0.111 0.889 29 H 0.065 0.935 30 H 0.076 0.924 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.071 0.929 34 H 0.049 0.951 35 H 0.070 0.930 36 H 0.049 0.951 37 H 0.051 0.949 38 H 0.068 0.932 39 H 0.082 0.918 40 H 0.064 0.936 41 H 0.049 0.951 42 H 0.057 0.943 43 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.242 -10.166 -9.648 14.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.155 4.155 3 C -0.051 4.051 4 C -0.207 4.207 5 C -0.129 4.129 6 C -0.214 4.214 7 C 0.329 3.671 8 O -0.434 6.434 9 N -0.331 5.331 10 C -0.032 4.032 11 C 0.032 3.968 12 H 0.123 0.877 13 C -0.191 4.191 14 C -0.027 4.027 15 H 0.139 0.861 16 C 0.051 3.949 17 N -0.324 5.324 18 C -0.354 4.354 19 H 0.098 0.902 20 C -0.204 4.204 21 N -0.570 5.570 22 Si 0.743 3.257 23 H -0.205 1.205 24 H -0.218 1.218 25 H -0.218 1.218 26 H 0.119 0.881 27 H 0.127 0.873 28 H 0.129 0.871 29 H 0.084 0.916 30 H 0.094 0.906 31 H 0.082 0.918 32 H 0.083 0.917 33 H 0.090 0.910 34 H 0.068 0.932 35 H 0.089 0.911 36 H 0.068 0.932 37 H 0.069 0.931 38 H 0.087 0.913 39 H 0.101 0.899 40 H 0.083 0.917 41 H 0.067 0.933 42 H 0.075 0.925 43 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 0.811 -9.779 -9.690 13.791 hybrid contribution -0.072 0.774 0.711 1.053 sum 0.739 -9.006 -8.979 12.739 Atomic orbital electron populations 1.24043 0.95901 1.02585 1.00529 1.22729 0.95769 0.97021 0.99948 1.19891 0.95945 0.95107 0.94176 1.22078 0.98709 0.96961 1.02957 1.21301 0.97151 0.99856 0.94636 1.21901 0.99724 0.97191 1.02544 1.19884 0.87703 0.76407 0.83155 1.90616 1.16015 1.50593 1.86136 1.49136 1.08678 1.70014 1.05270 1.23136 0.95811 1.00671 0.83535 1.23171 0.90675 0.87920 0.95035 0.87669 1.24131 1.01063 0.96542 0.97313 1.24850 0.81671 0.99172 0.96969 0.86063 1.22305 0.97242 0.90941 0.84391 1.45715 1.57009 1.17253 1.12466 1.19129 1.26209 0.97826 0.92268 0.90169 1.24772 0.99955 0.98100 0.97538 1.69888 1.36539 1.25347 1.25241 0.86045 0.77261 0.81064 0.81378 1.20487 1.21824 1.21762 0.88125 0.87308 0.87060 0.91571 0.90565 0.91799 0.91707 0.91024 0.93204 0.91064 0.93223 0.93094 0.91318 0.89923 0.91696 0.93295 0.92520 0.93725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.08 11.55 29.02 0.34 -1.75 16 2 C -0.14 -1.67 6.71 -36.02 -0.24 -1.91 16 3 C -0.05 -0.69 0.52 -156.81 -0.08 -0.77 16 4 C -0.15 -2.11 6.93 37.16 0.26 -1.85 16 5 C -0.09 -1.22 4.63 -26.73 -0.12 -1.34 16 6 C -0.16 -2.00 9.29 37.16 0.35 -1.65 16 7 C 0.54 9.97 6.23 -10.99 -0.07 9.90 16 8 O -0.55 -11.81 14.58 5.56 0.08 -11.73 16 9 N -0.60 -11.18 2.90 -156.80 -0.45 -11.63 16 10 C 0.09 1.81 6.38 -1.69 -0.01 1.80 16 11 C 0.14 2.70 5.52 -62.56 -0.35 2.36 16 12 H 0.11 1.84 8.14 -51.93 -0.42 1.41 16 13 C -0.15 -2.50 6.82 -22.31 -0.15 -2.65 16 14 C 0.08 1.34 3.38 -62.55 -0.21 1.13 16 15 H 0.12 1.85 3.35 -51.93 -0.17 1.68 16 16 C 0.18 4.00 4.51 -0.50 0.00 4.00 16 17 N -0.60 -14.44 3.07 -154.65 -0.47 -14.92 16 18 C -0.23 -6.06 10.38 -15.06 -0.16 -6.22 16 19 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 20 C -0.01 -0.20 5.49 -17.43 -0.10 -0.30 16 21 N -0.92 -26.38 10.57 55.49 0.59 -25.79 16 22 Si 0.91 21.80 29.55 -169.99 -5.02 16.77 16 23 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 24 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 25 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 26 H 0.10 0.91 8.06 -52.48 -0.42 0.49 16 27 H 0.11 1.17 5.60 -52.49 -0.29 0.87 16 28 H 0.11 1.32 6.90 -52.49 -0.36 0.95 16 29 H 0.07 0.76 7.79 -51.93 -0.40 0.35 16 30 H 0.08 1.14 4.45 -51.93 -0.23 0.91 16 31 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.07 1.05 7.87 -51.93 -0.41 0.64 16 34 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 35 H 0.07 1.10 6.15 -51.93 -0.32 0.78 16 36 H 0.05 0.56 6.47 -51.93 -0.34 0.22 16 37 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.07 1.54 8.14 -51.93 -0.42 1.11 16 39 H 0.08 1.38 8.14 -51.93 -0.42 0.95 16 40 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 41 H 0.05 1.28 7.73 -51.93 -0.40 0.88 16 42 H 0.06 1.41 7.47 -51.93 -0.39 1.02 16 43 H 0.25 7.05 8.31 -40.82 -0.34 6.71 16 LS Contribution 323.45 15.07 4.87 4.87 Total: -1.00 -30.76 323.45 -7.63 -38.39 By element: Atomic # 1 Polarization: 9.96 SS G_CDS: -6.67 Total: 3.29 kcal Atomic # 6 Polarization: 1.29 SS G_CDS: -0.55 Total: 0.74 kcal Atomic # 7 Polarization: -51.99 SS G_CDS: -0.34 Total: -52.34 kcal Atomic # 8 Polarization: -11.81 SS G_CDS: 0.08 Total: -11.73 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 4.87 Total: 4.87 kcal Total: -30.76 -7.63 -38.39 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032605473.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.102 kcal (2) G-P(sol) polarization free energy of solvation -30.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.341 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.393 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds