Wall clock time and date at job start Tue Mar 31 2020 00:34:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50705 * 119.99790 * 2 1 4 4 C 1.53001 * 109.47033 * 359.97438 * 3 2 1 5 5 C 1.53007 * 109.46707 * 239.99994 * 3 2 1 6 6 C 1.53000 * 109.46835 * 305.34319 * 5 3 2 7 7 C 1.50698 * 109.47507 * 120.00063 * 3 2 1 8 8 O 1.21276 * 120.00249 * 124.64702 * 7 3 2 9 9 N 1.34777 * 119.99749 * 304.64356 * 7 3 2 10 10 C 1.47868 * 126.94472 * 174.12913 * 9 7 3 11 11 C 1.56000 * 105.11399 * 181.87573 * 10 9 7 12 12 H 1.09002 * 116.81074 * 159.42142 * 11 10 9 13 13 C 1.57081 * 99.47699 * 33.16394 * 11 10 9 14 14 C 1.49297 * 126.94539 * 354.44599 * 9 7 3 15 15 H 1.09005 * 116.14954 * 16.70133 * 14 9 7 16 16 C 1.56017 * 104.09182 * 247.56035 * 14 9 7 17 17 N 1.49292 * 104.31696 * 289.11476 * 11 10 9 18 18 C 1.36939 * 126.94236 * 246.61636 * 17 11 10 19 19 H 1.07996 * 120.00408 * 0.02562 * 18 17 11 20 20 C 1.38809 * 119.99910 * 180.02562 * 18 17 11 21 21 N 1.31620 * 119.99933 * 359.97438 * 20 18 17 22 22 Si 1.86801 * 120.00185 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.46821 * 0.02562 * 22 20 18 24 24 H 1.48500 * 109.47389 * 119.99944 * 22 20 18 25 25 H 1.48502 * 109.47328 * 239.99937 * 22 20 18 26 26 H 1.08006 * 119.99962 * 180.02562 * 1 2 3 27 27 H 1.08002 * 120.00214 * 0.02562 * 1 2 3 28 28 H 1.08000 * 120.00397 * 179.97438 * 2 1 3 29 29 H 1.08999 * 109.47498 * 295.03770 * 4 3 2 30 30 H 1.08998 * 109.46742 * 55.03802 * 4 3 2 31 31 H 1.08998 * 109.47005 * 175.03969 * 4 3 2 32 32 H 1.08998 * 109.47429 * 65.34335 * 5 3 2 33 33 H 1.08996 * 109.46913 * 185.34773 * 5 3 2 34 34 H 1.09003 * 109.46814 * 179.97438 * 6 5 3 35 35 H 1.09003 * 109.47463 * 299.99866 * 6 5 3 36 36 H 1.09000 * 109.47130 * 60.00019 * 6 5 3 37 37 H 1.08993 * 110.32058 * 300.91184 * 10 9 7 38 38 H 1.08999 * 110.31236 * 63.09834 * 10 9 7 39 39 H 1.08997 * 112.36958 * 191.50846 * 13 11 10 40 40 H 1.09003 * 112.36173 * 64.06934 * 13 11 10 41 41 H 1.09002 * 110.31569 * 47.67351 * 16 14 9 42 42 H 1.09003 * 110.31753 * 169.85760 * 16 14 9 43 43 H 0.97000 * 119.99962 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0634 1.3052 0.0000 4 6 1.0691 2.4680 -0.0006 5 6 2.9431 1.3862 -1.2493 6 6 3.8458 0.1528 -1.3182 7 6 2.9299 1.3851 1.2304 8 8 4.1218 1.5805 1.1211 9 7 2.3801 1.2396 2.4523 10 6 3.0938 1.1697 3.7454 11 6 1.9787 0.9516 4.8143 12 1 2.2903 0.5341 5.7717 13 6 0.9738 0.0908 3.9677 14 6 0.9278 1.1098 2.7732 15 1 0.2728 0.8540 1.9403 16 6 0.5888 2.4264 3.5385 17 7 1.2593 2.2586 4.8692 18 6 1.2228 3.1344 5.9212 19 1 1.7540 2.9054 6.8332 20 6 0.5032 4.3167 5.8154 21 7 -0.1438 4.5960 4.7038 22 14 0.4540 5.5118 7.2502 23 1 1.2585 4.9690 8.3743 24 1 1.0168 6.8188 6.8254 25 1 -0.9516 5.6981 7.6915 26 1 -0.5400 -0.9354 0.0004 27 1 -0.5400 0.9353 -0.0004 28 1 1.8500 -0.9353 0.0004 29 1 0.5028 2.4614 -0.9319 30 1 0.3852 2.3616 0.8413 31 1 1.6111 3.4095 0.0882 32 1 2.3113 1.4240 -2.1367 33 1 3.5584 2.2846 -1.2028 34 1 4.4721 0.2103 -2.2085 35 1 4.4777 0.1149 -0.4308 36 1 3.2305 -0.7457 -1.3647 37 1 3.7917 0.3325 3.7478 38 1 3.6216 2.1038 3.9373 39 1 0.0062 -0.0183 4.4575 40 1 1.3952 -0.8713 3.6762 41 1 0.9847 3.2887 3.0020 42 1 -0.4894 2.5224 3.6674 43 1 -0.6463 5.4224 4.6297 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032605473.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:34:14 Heat of formation + Delta-G solvation = 25.403165 kcal Electronic energy + Delta-G solvation = -23564.030947 eV Core-core repulsion = 20417.921352 eV Total energy + Delta-G solvation = -3146.109594 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.94663 -39.92609 -37.55454 -35.40553 -33.37604 -32.65757 -30.85511 -30.57377 -29.84453 -27.14817 -26.27277 -24.83766 -23.34282 -22.32018 -21.64325 -20.64391 -19.40724 -18.46811 -17.98191 -17.33361 -16.72076 -16.24316 -15.90183 -15.62888 -15.39259 -15.32477 -14.59426 -14.10566 -13.84387 -13.80413 -13.47390 -13.38010 -13.32429 -13.00298 -12.95222 -12.78775 -12.75139 -12.58992 -12.26511 -12.11003 -12.04181 -11.95028 -11.88554 -11.75331 -11.52980 -11.40420 -10.90600 -10.76392 -9.99326 -9.53271 -8.90090 -7.85656 -5.19026 1.31034 1.44977 1.46360 1.55560 1.67945 2.05216 2.47390 3.30096 3.36517 3.52541 3.70686 3.76301 3.88486 3.94265 4.04872 4.10964 4.21192 4.38434 4.48987 4.50514 4.63586 4.67474 4.71479 4.73123 4.89179 4.92078 4.96329 5.03212 5.05370 5.09241 5.17709 5.23868 5.29911 5.34415 5.43337 5.44758 5.53144 5.66201 5.70785 5.84875 6.09022 6.69297 7.02542 7.20653 7.69147 8.40753 9.26092 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.025627 B = 0.005504 C = 0.005414 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1092.337397 B = 5086.420503 C = 5170.271549 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.152 4.152 3 C -0.042 4.042 4 C -0.147 4.147 5 C -0.092 4.092 6 C -0.151 4.151 7 C 0.531 3.469 8 O -0.590 6.590 9 N -0.603 5.603 10 C 0.095 3.905 11 C 0.134 3.866 12 H 0.126 0.874 13 C -0.130 4.130 14 C 0.096 3.904 15 H 0.151 0.849 16 C 0.184 3.816 17 N -0.622 5.622 18 C -0.232 4.232 19 H 0.086 0.914 20 C -0.067 4.067 21 N -0.952 5.952 22 Si 0.973 3.027 23 H -0.265 1.265 24 H -0.301 1.301 25 H -0.290 1.290 26 H 0.128 0.872 27 H 0.108 0.892 28 H 0.121 0.879 29 H 0.099 0.901 30 H 0.064 0.936 31 H 0.037 0.963 32 H 0.093 0.907 33 H 0.047 0.953 34 H 0.062 0.938 35 H 0.039 0.961 36 H 0.069 0.931 37 H 0.074 0.926 38 H 0.026 0.974 39 H 0.088 0.912 40 H 0.101 0.899 41 H 0.003 0.997 42 H 0.031 0.969 43 H 0.245 0.755 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.703 -12.810 -10.347 16.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.170 4.170 3 C -0.045 4.045 4 C -0.204 4.204 5 C -0.130 4.130 6 C -0.208 4.208 7 C 0.322 3.678 8 O -0.471 6.471 9 N -0.335 5.335 10 C -0.030 4.030 11 C 0.027 3.973 12 H 0.144 0.856 13 C -0.170 4.170 14 C -0.006 4.006 15 H 0.168 0.832 16 C 0.059 3.941 17 N -0.347 5.347 18 C -0.361 4.361 19 H 0.104 0.896 20 C -0.259 4.259 21 N -0.602 5.602 22 Si 0.802 3.198 23 H -0.189 1.189 24 H -0.229 1.229 25 H -0.217 1.217 26 H 0.146 0.854 27 H 0.126 0.874 28 H 0.139 0.861 29 H 0.117 0.883 30 H 0.083 0.917 31 H 0.056 0.944 32 H 0.112 0.888 33 H 0.065 0.935 34 H 0.081 0.919 35 H 0.058 0.942 36 H 0.088 0.912 37 H 0.092 0.908 38 H 0.044 0.956 39 H 0.106 0.894 40 H 0.119 0.881 41 H 0.021 0.979 42 H 0.049 0.951 43 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -0.122 -12.466 -10.381 16.223 hybrid contribution 0.281 1.612 0.914 1.875 sum 0.159 -10.853 -9.466 14.403 Atomic orbital electron populations 1.24284 0.95292 1.03881 0.97652 1.22629 0.96191 0.95801 1.02414 1.19898 0.95611 0.96710 0.92288 1.22068 0.98414 0.95740 1.04147 1.21338 0.97279 0.99116 0.95217 1.21840 0.99621 0.97738 1.01634 1.20799 0.87850 0.75070 0.84123 1.90595 1.17904 1.51885 1.86745 1.49254 1.08959 1.70063 1.05236 1.22979 0.96174 0.99377 0.84444 1.23513 0.90856 0.86501 0.96394 0.85632 1.24068 1.00537 0.97062 0.95290 1.24794 0.81391 0.96503 0.97898 0.83208 1.22008 0.95246 0.92338 0.84476 1.46015 1.57604 1.18831 1.12259 1.19522 1.25095 0.98311 0.93149 0.89603 1.25543 1.00586 0.99960 0.99858 1.70090 1.37678 1.25418 1.26964 0.85080 0.77104 0.78475 0.79115 1.18936 1.22882 1.21742 0.85422 0.87388 0.86068 0.88280 0.91726 0.94401 0.88832 0.93456 0.91851 0.94199 0.91219 0.90833 0.95553 0.89364 0.88063 0.97911 0.95106 0.94532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.98 11.55 67.78 0.78 -2.20 16 2 C -0.15 -3.20 6.71 25.65 0.17 -3.03 16 3 C -0.04 -1.16 0.52 -53.67 -0.03 -1.18 16 4 C -0.15 -4.02 6.93 71.98 0.50 -3.53 16 5 C -0.09 -2.31 4.63 30.60 0.14 -2.17 16 6 C -0.15 -3.61 9.29 71.98 0.67 -2.94 16 7 C 0.53 19.63 6.23 87.66 0.55 20.18 16 8 O -0.59 -25.84 14.58 -3.02 -0.04 -25.88 16 9 N -0.60 -22.31 2.90 -768.37 -2.23 -24.54 16 10 C 0.10 3.69 6.38 87.16 0.56 4.25 16 11 C 0.13 4.99 5.52 46.92 0.26 5.25 16 12 H 0.13 4.12 8.14 -2.39 -0.02 4.10 16 13 C -0.13 -3.92 6.82 33.46 0.23 -3.69 16 14 C 0.10 3.26 3.38 46.93 0.16 3.42 16 15 H 0.15 4.19 3.35 -2.38 -0.01 4.18 16 16 C 0.18 8.62 4.51 86.75 0.39 9.01 16 17 N -0.62 -30.36 3.07 -643.19 -1.97 -32.33 16 18 C -0.23 -12.60 10.38 84.03 0.87 -11.73 16 19 H 0.09 4.44 7.83 -2.91 -0.02 4.42 16 20 C -0.07 -3.75 5.49 84.86 0.47 -3.28 16 21 N -0.95 -56.58 10.57 21.65 0.23 -56.36 16 22 Si 0.97 45.74 29.55 68.60 2.03 47.76 16 23 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 24 H -0.30 -14.51 7.11 99.48 0.71 -13.81 16 25 H -0.29 -13.53 7.11 99.48 0.71 -12.82 16 26 H 0.13 1.58 8.06 -2.91 -0.02 1.55 16 27 H 0.11 1.90 5.60 -2.91 -0.02 1.88 16 28 H 0.12 2.36 6.90 -2.91 -0.02 2.34 16 29 H 0.10 2.03 7.79 -2.39 -0.02 2.01 16 30 H 0.06 1.91 4.45 -2.39 -0.01 1.90 16 31 H 0.04 1.21 8.14 -2.39 -0.02 1.19 16 32 H 0.09 1.82 8.14 -2.39 -0.02 1.80 16 33 H 0.05 1.40 7.87 -2.39 -0.02 1.38 16 34 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 35 H 0.04 1.21 6.15 -2.39 -0.01 1.19 16 36 H 0.07 1.37 6.47 -2.39 -0.02 1.35 16 37 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 38 H 0.03 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.09 2.64 8.14 -2.39 -0.02 2.62 16 40 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 41 H 0.00 0.15 7.73 -2.39 -0.02 0.13 16 42 H 0.03 1.58 7.47 -2.39 -0.02 1.56 16 43 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16 Total: -1.00 -70.79 323.45 4.71 -66.07 By element: Atomic # 1 Polarization: 15.91 SS G_CDS: 0.99 Total: 16.90 kcal Atomic # 6 Polarization: 2.65 SS G_CDS: 5.71 Total: 8.37 kcal Atomic # 7 Polarization: -109.25 SS G_CDS: -3.97 Total: -113.22 kcal Atomic # 8 Polarization: -25.84 SS G_CDS: -0.04 Total: -25.88 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.76 kcal Total: -70.79 4.71 -66.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032605473.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.475 kcal (2) G-P(sol) polarization free energy of solvation -70.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.690 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.072 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.403 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds