Wall clock time and date at job start Tue Mar 31 2020 00:17:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47315 * 2 1 4 4 C 1.53002 * 109.47201 * 120.00262 * 2 1 3 5 5 C 1.50696 * 115.55077 * 305.74571 * 4 2 1 6 6 O 1.21277 * 120.00043 * 84.83191 * 5 4 2 7 7 N 1.34774 * 120.00282 * 264.83852 * 5 4 2 8 8 C 1.47869 * 126.94185 * 356.98233 * 7 5 4 9 9 C 1.56014 * 105.10578 * 182.26942 * 8 7 5 10 10 H 1.08997 * 116.90004 * 159.21037 * 9 8 7 11 11 C 1.57084 * 99.60740 * 32.80380 * 9 8 7 12 12 C 1.49294 * 126.94940 * 177.30281 * 7 5 4 13 13 H 1.09000 * 116.14597 * 16.44039 * 12 7 5 14 14 C 1.56019 * 104.09034 * 246.43262 * 12 7 5 15 15 N 1.47862 * 105.10371 * 288.76403 * 14 12 7 16 16 C 1.36941 * 126.94730 * 181.98410 * 15 14 12 17 17 H 1.07991 * 120.00565 * 180.02562 * 16 15 14 18 18 C 1.38811 * 119.99651 * 0.02562 * 16 15 14 19 19 N 1.31622 * 120.00002 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00137 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.46883 * 60.00273 * 20 18 16 22 22 H 1.48501 * 109.47178 * 179.97438 * 20 18 16 23 23 H 1.48494 * 109.47038 * 300.00231 * 20 18 16 24 24 C 1.52998 * 117.51932 * 91.44788 * 4 2 1 25 25 C 1.52992 * 60.00226 * 107.48035 * 24 4 2 26 26 H 1.09001 * 109.47350 * 307.12291 * 1 2 3 27 27 H 1.08998 * 109.47015 * 67.12455 * 1 2 3 28 28 H 1.09006 * 109.46971 * 187.12157 * 1 2 3 29 29 H 1.09001 * 109.47299 * 240.00030 * 2 1 3 30 30 H 1.08998 * 109.46603 * 52.92712 * 3 2 1 31 31 H 1.08990 * 109.47113 * 172.92483 * 3 2 1 32 32 H 1.08995 * 109.47040 * 292.92808 * 3 2 1 33 33 H 1.09002 * 110.31683 * 301.17348 * 8 7 5 34 34 H 1.08999 * 110.31659 * 63.36015 * 8 7 5 35 35 H 1.09001 * 112.36757 * 191.71600 * 11 9 8 36 36 H 1.09003 * 112.44605 * 64.30217 * 11 9 8 37 37 H 1.08997 * 110.31429 * 47.67418 * 14 12 7 38 38 H 1.09002 * 110.31094 * 169.86027 * 14 12 7 39 39 H 0.97007 * 120.00088 * 179.97438 * 19 18 16 40 40 H 1.08998 * 117.49915 * 214.97261 * 24 4 2 41 41 H 1.09003 * 117.49860 * 359.97438 * 24 4 2 42 42 H 1.09001 * 117.50238 * 252.51098 * 25 24 4 43 43 H 1.09003 * 117.50271 * 107.48826 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.5078 -0.2045 2.5610 6 8 0.4424 -0.6023 2.9821 7 7 2.2158 0.6998 3.2661 8 6 3.5510 1.2400 2.9314 9 6 3.9111 2.1945 4.1117 10 1 4.9665 2.4272 4.2534 11 6 3.1957 1.4383 5.2881 12 6 1.8136 1.3538 4.5465 13 1 0.9970 0.8805 5.0918 14 6 1.6306 2.8555 4.1648 15 7 2.9991 3.3619 3.9262 16 6 3.3576 4.6428 3.6004 17 1 4.3979 4.8907 3.4500 18 6 2.3839 5.6225 3.4635 19 7 1.1160 5.3205 3.6473 20 14 2.8729 7.3699 3.0198 21 1 3.5697 7.3710 1.7085 22 1 1.6567 8.2177 2.9342 23 1 3.7809 7.9099 4.0634 24 6 2.3080 -2.2235 1.1382 25 6 3.4784 -1.2422 1.2264 26 1 -0.3634 0.6202 0.8194 27 1 -0.3633 0.3995 -0.9468 28 1 -0.3633 -1.0198 0.1274 29 1 1.8933 -0.5138 -0.8900 30 1 1.5770 1.9915 0.8199 31 1 3.1225 1.4451 0.1266 32 1 1.7837 1.9185 -0.9464 33 1 4.2796 0.4322 2.8623 34 1 3.5106 1.7953 1.9943 35 1 3.1432 2.0389 6.1961 36 1 3.6275 0.4549 5.4742 37 1 1.0305 2.9454 3.2594 38 1 1.1632 3.4002 4.9852 39 1 0.4355 6.0053 3.5520 40 1 2.0993 -2.8380 2.0140 41 1 2.1205 -2.6984 0.1751 42 1 4.0613 -1.0714 0.3213 43 1 4.0399 -1.2110 2.1602 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001032616004.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:17:14 Heat of formation + Delta-G solvation = 42.071254 kcal Electronic energy + Delta-G solvation = -23621.731340 eV Core-core repulsion = 20476.344528 eV Total energy + Delta-G solvation = -3145.386812 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.42587 -38.64035 -36.55281 -33.58057 -33.23556 -31.41210 -29.07264 -28.52002 -26.89440 -25.24867 -24.52692 -22.89125 -22.39896 -21.59982 -19.89074 -19.41490 -18.09129 -16.81862 -16.13041 -15.73708 -15.67329 -14.98327 -14.19476 -14.08100 -13.76385 -13.48093 -13.17868 -12.94729 -12.88564 -12.24700 -11.99472 -11.81904 -11.75226 -11.49513 -11.30437 -11.26036 -11.00624 -10.95377 -10.83678 -10.80549 -10.71684 -10.56581 -10.25072 -10.16049 -10.07765 -9.84378 -9.62422 -9.21000 -8.68679 -7.92813 -6.91511 -5.76318 -3.10636 3.08796 3.35332 3.37229 3.41463 3.43444 3.81061 4.41931 4.57747 4.77618 4.88376 4.98407 5.15087 5.21742 5.37211 5.41808 5.49319 5.56083 5.57806 5.59419 5.66692 5.77969 5.81703 5.91357 5.92975 6.00417 6.12431 6.15302 6.20147 6.25377 6.30222 6.32339 6.43416 6.51153 6.59995 6.61132 6.67097 6.76659 7.42740 7.50352 7.72094 8.09959 8.17739 8.68693 9.10596 9.71532 10.41063 11.35567 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.020707 B = 0.006326 C = 0.005734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.843758 B = 4425.393329 C = 4882.372542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.045 4.045 3 C -0.149 4.149 4 C -0.136 4.136 5 C 0.567 3.433 6 O -0.553 6.553 7 N -0.599 5.599 8 C 0.081 3.919 9 C 0.138 3.862 10 H 0.105 0.895 11 C -0.153 4.153 12 C 0.096 3.904 13 H 0.112 0.888 14 C 0.177 3.823 15 N -0.596 5.596 16 C -0.231 4.231 17 H 0.079 0.921 18 C -0.005 4.005 19 N -0.919 5.919 20 Si 0.911 3.089 21 H -0.285 1.285 22 H -0.291 1.291 23 H -0.285 1.285 24 C -0.151 4.151 25 C -0.169 4.169 26 H 0.060 0.940 27 H 0.052 0.948 28 H 0.055 0.945 29 H 0.073 0.927 30 H 0.067 0.933 31 H 0.057 0.943 32 H 0.053 0.947 33 H 0.054 0.946 34 H 0.078 0.922 35 H 0.082 0.918 36 H 0.063 0.937 37 H 0.047 0.953 38 H 0.054 0.946 39 H 0.254 0.746 40 H 0.095 0.905 41 H 0.099 0.901 42 H 0.100 0.900 43 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.082 -11.808 -4.491 13.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.064 4.064 3 C -0.206 4.206 4 C -0.139 4.139 5 C 0.355 3.645 6 O -0.431 6.431 7 N -0.332 5.332 8 C -0.044 4.044 9 C 0.029 3.971 10 H 0.123 0.877 11 C -0.192 4.192 12 C -0.007 4.007 13 H 0.129 0.871 14 C 0.052 3.948 15 N -0.320 5.320 16 C -0.359 4.359 17 H 0.097 0.903 18 C -0.202 4.202 19 N -0.566 5.566 20 Si 0.741 3.259 21 H -0.212 1.212 22 H -0.216 1.216 23 H -0.211 1.211 24 C -0.188 4.188 25 C -0.205 4.205 26 H 0.079 0.921 27 H 0.071 0.929 28 H 0.074 0.926 29 H 0.091 0.909 30 H 0.086 0.914 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.072 0.928 34 H 0.096 0.904 35 H 0.101 0.899 36 H 0.082 0.918 37 H 0.065 0.935 38 H 0.072 0.928 39 H 0.064 0.936 40 H 0.113 0.887 41 H 0.118 0.882 42 H 0.118 0.882 43 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 4.329 -11.789 -4.371 13.298 hybrid contribution 0.185 1.006 -0.327 1.074 sum 4.514 -10.783 -4.698 12.598 Atomic orbital electron populations 1.21784 0.94422 1.02174 1.01679 1.20562 0.96260 0.96095 0.93476 1.21928 1.01280 0.94968 1.02430 1.21446 0.99852 0.97390 0.95224 1.18967 0.83772 0.78047 0.83762 1.90644 1.22490 1.59453 1.70558 1.49150 1.19524 1.40484 1.24012 1.23461 0.82925 0.96492 1.01497 1.23203 0.95336 0.87382 0.91171 0.87744 1.24165 0.96551 0.99663 0.98841 1.24361 0.97090 0.95261 0.83973 0.87059 1.21878 0.86932 0.85890 1.00072 1.45206 1.00953 1.04379 1.81480 1.18982 0.92777 0.83315 1.40798 0.90281 1.24797 0.95358 0.98152 1.01852 1.69908 0.99025 1.32569 1.55058 0.86221 0.77048 0.84325 0.78263 1.21199 1.21648 1.21147 1.22974 1.01668 0.90806 1.03399 1.23172 0.90502 1.03170 1.03698 0.92101 0.92901 0.92551 0.90882 0.91430 0.92378 0.92752 0.92837 0.90401 0.89895 0.91819 0.93506 0.92779 0.93565 0.88667 0.88226 0.88152 0.88241 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 8.60 37.16 0.32 -1.81 16 2 C -0.05 -0.63 2.76 -90.62 -0.25 -0.88 16 3 C -0.15 -2.29 7.96 37.16 0.30 -2.00 16 4 C -0.14 -1.99 1.07 -155.66 -0.17 -2.16 16 5 C 0.57 10.51 5.85 -10.99 -0.06 10.44 16 6 O -0.55 -12.00 16.90 5.56 0.09 -11.91 16 7 N -0.60 -11.02 2.95 -156.79 -0.46 -11.48 16 8 C 0.08 1.37 5.31 -1.68 -0.01 1.36 16 9 C 0.14 2.53 5.53 -62.55 -0.35 2.18 16 10 H 0.10 1.72 8.14 -51.93 -0.42 1.30 16 11 C -0.15 -2.59 6.81 -22.30 -0.15 -2.74 16 12 C 0.10 1.87 5.25 -62.55 -0.33 1.54 16 13 H 0.11 2.15 8.05 -51.93 -0.42 1.73 16 14 C 0.18 4.22 4.76 -1.68 -0.01 4.21 16 15 N -0.60 -14.07 3.02 -156.35 -0.47 -14.54 16 16 C -0.23 -6.04 10.38 -15.06 -0.16 -6.20 16 17 H 0.08 1.97 7.83 -52.49 -0.41 1.56 16 18 C 0.00 -0.13 5.49 -17.43 -0.10 -0.23 16 19 N -0.92 -26.50 10.56 55.49 0.59 -25.91 16 20 Si 0.91 21.54 29.55 -169.99 -5.02 16.51 16 21 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 22 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 23 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 24 C -0.15 -1.83 9.92 -26.74 -0.27 -2.10 16 25 C -0.17 -1.98 8.64 -26.73 -0.23 -2.21 16 26 H 0.06 1.09 7.45 -51.93 -0.39 0.70 16 27 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.07 0.86 8.09 -51.93 -0.42 0.44 16 30 H 0.07 1.30 7.78 -51.93 -0.40 0.90 16 31 H 0.06 0.85 6.92 -51.93 -0.36 0.49 16 32 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.05 0.75 5.88 -51.93 -0.31 0.45 16 34 H 0.08 1.43 5.59 -51.93 -0.29 1.14 16 35 H 0.08 1.44 8.14 -51.93 -0.42 1.02 16 36 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.05 1.28 7.68 -51.93 -0.40 0.88 16 38 H 0.05 1.43 7.46 -51.93 -0.39 1.04 16 39 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 40 H 0.09 1.21 8.14 -51.93 -0.42 0.78 16 41 H 0.10 1.02 8.14 -51.93 -0.42 0.59 16 42 H 0.10 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.10 1.18 6.38 -51.93 -0.33 0.84 16 LS Contribution 333.30 15.07 5.02 5.02 Total: -1.00 -30.38 333.30 -8.76 -39.14 By element: Atomic # 1 Polarization: 10.80 SS G_CDS: -7.05 Total: 3.75 kcal Atomic # 6 Polarization: 0.88 SS G_CDS: -1.46 Total: -0.58 kcal Atomic # 7 Polarization: -51.59 SS G_CDS: -0.35 Total: -51.94 kcal Atomic # 8 Polarization: -12.00 SS G_CDS: 0.09 Total: -11.91 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.02 Total: 16.51 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -30.38 -8.76 -39.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032616004.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.210 kcal (2) G-P(sol) polarization free energy of solvation -30.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.834 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.763 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.139 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds