Wall clock time and date at job start Tue Mar 31 2020 00:17:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53001 * 109.47315 * 2 1 4 4 C 1.53002 * 109.47201 * 120.00262 * 2 1 3 5 5 C 1.50696 * 115.55077 * 305.74571 * 4 2 1 6 6 O 1.21277 * 120.00043 * 84.83191 * 5 4 2 7 7 N 1.34774 * 120.00282 * 264.83852 * 5 4 2 8 8 C 1.47869 * 126.94185 * 356.98233 * 7 5 4 9 9 C 1.56014 * 105.10578 * 182.26942 * 8 7 5 10 10 H 1.08997 * 116.90004 * 159.21037 * 9 8 7 11 11 C 1.57084 * 99.60740 * 32.80380 * 9 8 7 12 12 C 1.49294 * 126.94940 * 177.30281 * 7 5 4 13 13 H 1.09000 * 116.14597 * 16.44039 * 12 7 5 14 14 C 1.56019 * 104.09034 * 246.43262 * 12 7 5 15 15 N 1.47862 * 105.10371 * 288.76403 * 14 12 7 16 16 C 1.36941 * 126.94730 * 181.98410 * 15 14 12 17 17 H 1.07991 * 120.00565 * 180.02562 * 16 15 14 18 18 C 1.38811 * 119.99651 * 0.02562 * 16 15 14 19 19 N 1.31622 * 120.00002 * 0.02562 * 18 16 15 20 20 Si 1.86799 * 120.00137 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.46883 * 60.00273 * 20 18 16 22 22 H 1.48501 * 109.47178 * 179.97438 * 20 18 16 23 23 H 1.48494 * 109.47038 * 300.00231 * 20 18 16 24 24 C 1.52998 * 117.51932 * 91.44788 * 4 2 1 25 25 C 1.52992 * 60.00226 * 107.48035 * 24 4 2 26 26 H 1.09001 * 109.47350 * 307.12291 * 1 2 3 27 27 H 1.08998 * 109.47015 * 67.12455 * 1 2 3 28 28 H 1.09006 * 109.46971 * 187.12157 * 1 2 3 29 29 H 1.09001 * 109.47299 * 240.00030 * 2 1 3 30 30 H 1.08998 * 109.46603 * 52.92712 * 3 2 1 31 31 H 1.08990 * 109.47113 * 172.92483 * 3 2 1 32 32 H 1.08995 * 109.47040 * 292.92808 * 3 2 1 33 33 H 1.09002 * 110.31683 * 301.17348 * 8 7 5 34 34 H 1.08999 * 110.31659 * 63.36015 * 8 7 5 35 35 H 1.09001 * 112.36757 * 191.71600 * 11 9 8 36 36 H 1.09003 * 112.44605 * 64.30217 * 11 9 8 37 37 H 1.08997 * 110.31429 * 47.67418 * 14 12 7 38 38 H 1.09002 * 110.31094 * 169.86027 * 14 12 7 39 39 H 0.97007 * 120.00088 * 179.97438 * 19 18 16 40 40 H 1.08998 * 117.49915 * 214.97261 * 24 4 2 41 41 H 1.09003 * 117.49860 * 359.97438 * 24 4 2 42 42 H 1.09001 * 117.50238 * 252.51098 * 25 24 4 43 43 H 1.09003 * 117.50271 * 107.48826 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.5078 -0.2045 2.5610 6 8 0.4424 -0.6023 2.9821 7 7 2.2158 0.6998 3.2661 8 6 3.5510 1.2400 2.9314 9 6 3.9111 2.1945 4.1117 10 1 4.9665 2.4272 4.2534 11 6 3.1957 1.4383 5.2881 12 6 1.8136 1.3538 4.5465 13 1 0.9970 0.8805 5.0918 14 6 1.6306 2.8555 4.1648 15 7 2.9991 3.3619 3.9262 16 6 3.3576 4.6428 3.6004 17 1 4.3979 4.8907 3.4500 18 6 2.3839 5.6225 3.4635 19 7 1.1160 5.3205 3.6473 20 14 2.8729 7.3699 3.0198 21 1 3.5697 7.3710 1.7085 22 1 1.6567 8.2177 2.9342 23 1 3.7809 7.9099 4.0634 24 6 2.3080 -2.2235 1.1382 25 6 3.4784 -1.2422 1.2264 26 1 -0.3634 0.6202 0.8194 27 1 -0.3633 0.3995 -0.9468 28 1 -0.3633 -1.0198 0.1274 29 1 1.8933 -0.5138 -0.8900 30 1 1.5770 1.9915 0.8199 31 1 3.1225 1.4451 0.1266 32 1 1.7837 1.9185 -0.9464 33 1 4.2796 0.4322 2.8623 34 1 3.5106 1.7953 1.9943 35 1 3.1432 2.0389 6.1961 36 1 3.6275 0.4549 5.4742 37 1 1.0305 2.9454 3.2594 38 1 1.1632 3.4002 4.9852 39 1 0.4355 6.0053 3.5520 40 1 2.0993 -2.8380 2.0140 41 1 2.1205 -2.6984 0.1751 42 1 4.0613 -1.0714 0.3213 43 1 4.0399 -1.2110 2.1602 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001032616004.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 00:17:14 Heat of formation + Delta-G solvation = 24.174076 kcal Electronic energy + Delta-G solvation = -23622.507419 eV Core-core repulsion = 20476.344528 eV Total energy + Delta-G solvation = -3146.162891 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 278.174 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.85330 -40.04271 -37.91513 -35.41554 -34.35800 -33.16605 -30.75915 -30.22360 -28.14309 -26.95816 -26.03504 -24.39402 -23.37124 -22.90637 -21.40770 -21.01184 -19.64719 -18.49503 -17.61873 -17.24051 -17.01776 -16.48954 -15.89169 -15.44504 -15.29749 -14.82700 -14.47123 -14.44345 -14.16896 -13.79518 -13.55471 -13.43895 -13.14436 -13.06725 -12.85928 -12.67425 -12.55126 -12.33715 -12.25614 -12.18499 -12.15062 -12.06930 -11.99795 -11.81144 -11.50491 -11.22075 -10.92460 -10.78711 -10.51623 -9.47621 -8.88682 -7.82854 -5.18404 1.46479 1.49219 1.55256 1.66371 2.01005 2.49165 2.78965 3.33153 3.36873 3.52773 3.64672 3.77152 3.89950 3.94075 3.95209 4.03969 4.20346 4.28978 4.35242 4.43667 4.60524 4.68891 4.71122 4.77757 4.82573 4.89741 4.92269 4.95693 5.00033 5.02569 5.06647 5.14078 5.17264 5.24005 5.26416 5.34645 5.41550 5.46192 5.57157 5.66074 6.10625 6.73795 7.03825 7.24070 7.72495 8.43405 9.28047 Molecular weight = 278.17amu Principal moments of inertia in cm(-1) A = 0.020707 B = 0.006326 C = 0.005734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.843758 B = 4425.393329 C = 4882.372542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.038 4.038 3 C -0.140 4.140 4 C -0.165 4.165 5 C 0.559 3.441 6 O -0.596 6.596 7 N -0.601 5.601 8 C 0.090 3.910 9 C 0.132 3.868 10 H 0.135 0.865 11 C -0.130 4.130 12 C 0.094 3.906 13 H 0.107 0.893 14 C 0.194 3.806 15 N -0.613 5.613 16 C -0.228 4.228 17 H 0.096 0.904 18 C -0.071 4.071 19 N -0.957 5.957 20 Si 0.975 3.025 21 H -0.276 1.276 22 H -0.305 1.305 23 H -0.274 1.274 24 C -0.138 4.138 25 C -0.146 4.146 26 H 0.014 0.986 27 H 0.069 0.931 28 H 0.060 0.940 29 H 0.113 0.887 30 H 0.014 0.986 31 H 0.069 0.931 32 H 0.063 0.937 33 H 0.098 0.902 34 H 0.062 0.938 35 H 0.078 0.922 36 H 0.101 0.899 37 H -0.005 1.005 38 H 0.014 0.986 39 H 0.242 0.758 40 H 0.086 0.914 41 H 0.126 0.874 42 H 0.128 0.872 43 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.626 -13.892 -5.854 17.368 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.057 4.057 3 C -0.198 4.198 4 C -0.168 4.168 5 C 0.349 3.651 6 O -0.478 6.478 7 N -0.333 5.333 8 C -0.034 4.034 9 C 0.026 3.974 10 H 0.153 0.847 11 C -0.169 4.169 12 C -0.009 4.009 13 H 0.125 0.875 14 C 0.068 3.932 15 N -0.338 5.338 16 C -0.356 4.356 17 H 0.114 0.886 18 C -0.263 4.263 19 N -0.607 5.607 20 Si 0.804 3.196 21 H -0.202 1.202 22 H -0.231 1.231 23 H -0.200 1.200 24 C -0.176 4.176 25 C -0.182 4.182 26 H 0.033 0.967 27 H 0.088 0.912 28 H 0.079 0.921 29 H 0.131 0.869 30 H 0.033 0.967 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.116 0.884 34 H 0.080 0.920 35 H 0.097 0.903 36 H 0.119 0.881 37 H 0.013 0.987 38 H 0.032 0.968 39 H 0.051 0.949 40 H 0.105 0.895 41 H 0.144 0.856 42 H 0.146 0.854 43 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 7.945 -13.902 -5.737 17.009 hybrid contribution -0.937 1.621 0.110 1.875 sum 7.007 -12.281 -5.626 15.218 Atomic orbital electron populations 1.21750 0.95815 1.01465 1.00693 1.20581 0.95057 0.95233 0.94797 1.21836 1.01467 0.95716 1.00732 1.21397 1.03076 0.99584 0.92735 1.19800 0.83083 0.77399 0.84769 1.90607 1.24339 1.61025 1.71796 1.49232 1.20223 1.40293 1.23538 1.23373 0.82854 0.97324 0.99815 1.23638 0.96051 0.85483 0.92249 0.84709 1.24059 0.93842 1.01260 0.97740 1.24160 0.99025 0.92193 0.85555 0.87508 1.21415 0.86808 0.88792 0.96190 1.45438 1.01825 1.05256 1.81253 1.19484 0.93311 0.84377 1.38463 0.88645 1.25634 0.95382 1.02100 1.03184 1.70168 1.00064 1.32995 1.57457 0.85196 0.76177 0.79782 0.78463 1.20189 1.23144 1.19958 1.23106 1.00999 0.88997 1.04475 1.23329 0.89065 1.00703 1.05149 0.96705 0.91156 0.92121 0.86914 0.96707 0.91244 0.91766 0.88373 0.92002 0.90305 0.88078 0.98714 0.96835 0.94855 0.89504 0.85595 0.85383 0.87895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.16 8.60 71.98 0.62 -3.54 16 2 C -0.04 -0.99 2.76 -10.79 -0.03 -1.02 16 3 C -0.14 -4.24 7.96 71.98 0.57 -3.67 16 4 C -0.16 -4.45 1.07 -52.93 -0.06 -4.50 16 5 C 0.56 20.75 5.85 87.66 0.51 21.27 16 6 O -0.60 -26.82 16.90 -3.02 -0.05 -26.87 16 7 N -0.60 -21.96 2.95 -768.34 -2.26 -24.22 16 8 C 0.09 2.83 5.31 87.16 0.46 3.29 16 9 C 0.13 4.55 5.53 46.93 0.26 4.81 16 10 H 0.14 3.86 8.14 -2.39 -0.02 3.85 16 11 C -0.13 -4.15 6.81 33.46 0.23 -3.92 16 12 C 0.09 3.77 5.25 46.93 0.25 4.02 16 13 H 0.11 4.34 8.05 -2.39 -0.02 4.32 16 14 C 0.19 9.86 4.76 87.16 0.42 10.28 16 15 N -0.61 -29.38 3.02 -648.56 -1.96 -31.33 16 16 C -0.23 -12.00 10.38 84.03 0.87 -11.13 16 17 H 0.10 4.62 7.83 -2.92 -0.02 4.60 16 18 C -0.07 -3.96 5.49 84.86 0.47 -3.50 16 19 N -0.96 -58.81 10.56 21.65 0.23 -58.58 16 20 Si 0.97 45.28 29.55 68.60 2.03 47.31 16 21 H -0.28 -12.24 7.11 99.48 0.71 -11.53 16 22 H -0.30 -14.70 7.11 99.48 0.71 -14.00 16 23 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 24 C -0.14 -2.82 9.92 30.59 0.30 -2.51 16 25 C -0.15 -2.72 8.64 30.59 0.26 -2.45 16 26 H 0.01 0.54 7.45 -2.39 -0.02 0.52 16 27 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 28 H 0.06 1.72 8.14 -2.38 -0.02 1.70 16 29 H 0.11 2.11 8.09 -2.39 -0.02 2.09 16 30 H 0.01 0.57 7.78 -2.39 -0.02 0.55 16 31 H 0.07 1.90 6.92 -2.39 -0.02 1.88 16 32 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.10 2.26 5.88 -2.39 -0.01 2.25 16 34 H 0.06 2.18 5.59 -2.39 -0.01 2.17 16 35 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 36 H 0.10 2.56 8.14 -2.39 -0.02 2.54 16 37 H -0.01 -0.32 7.68 -2.39 -0.02 -0.34 16 38 H 0.01 0.78 7.46 -2.39 -0.02 0.76 16 39 H 0.24 14.76 8.31 -92.70 -0.77 13.99 16 40 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 41 H 0.13 1.92 8.14 -2.39 -0.02 1.90 16 42 H 0.13 1.75 8.14 -2.39 -0.02 1.73 16 43 H 0.10 1.87 6.38 -2.39 -0.02 1.85 16 Total: -1.00 -72.91 333.30 4.10 -68.81 By element: Atomic # 1 Polarization: 16.49 SS G_CDS: 0.98 Total: 17.47 kcal Atomic # 6 Polarization: 2.28 SS G_CDS: 5.14 Total: 7.42 kcal Atomic # 7 Polarization: -110.14 SS G_CDS: -3.99 Total: -114.14 kcal Atomic # 8 Polarization: -26.82 SS G_CDS: -0.05 Total: -26.87 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.31 kcal Total: -72.91 4.10 -68.81 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001032616004.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.986 kcal (2) G-P(sol) polarization free energy of solvation -72.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.100 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.812 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds